Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003249.1

Orthogroup ID

OG0025556

Physical Location & Seq

Genomic Coordinates Forward (+)

17023 .. 18122

Gene Structure 1100 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003249.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

atgcatctcctcagtctggatgccaacagcagactcctgaattcatatcctgagatgagacagtaccataacaagctccagctcctactggagtctgtaggtgaagggtgcaaccgtgtagatatcaatctactcttgagtgtgactactaatggtggaaggactgatttcttcttcaactcagtaaatctcaaggctggtgacttttgtggactgtgcctctcatttccggcggcttcacacattcagattttactcaaatccctggaggacttttgggcagcttgctatattcaagcagcttggcgccgccactgtaagaaaaagctagagaagtctttgcggaaagaggagaataggttgcaagatgcactagtcaaggctggtggaagctccccaactctaggttccaccatattcgcgttgcattttgctgctaatgaacttcgtgctattaggcacaaccataggtcattgctactccagaagccagcagagcctgatatatctgctcaaaagcaacaggcagtagtctttcgggtttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0008150 GO:0016020 GO:0016021 GO:0031224 GO:0031226 GO:0042391 GO:0044425 GO:0044459 GO:0044464 GO:0065007 GO:0065008 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Ion_trans cNMP_binding

Protein Analysis

181

Amino Acids

20.38

Weight (kDa)

9.35

Isoelectric Point (pI)

50.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0025556)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0003249.1_g000006
rosa_samantha	Rh1AG444500 Rh1CG413700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	306
AccII	CGCG	1 cut(s)	422
AciI	CCGC	3 cut(s)	233, 310, 343
AcsI	RAATTY	1 cut(s)	40
AcyI	GRCGYC	1 cut(s)	307
AfaI	GTAC	1 cut(s)	65
AfiI	CCNNNNNNNGG	2 cut(s)	16, 404
AgsI	TTSAA	2 cut(s)	178, 296
AhlI	ACTAGT	1 cut(s)	373
AjnI	CCWGG	1 cut(s)	264
AjuI	GAANNNNNNNTTGG	2 cut(s)	391, 423
AluBI	AGCT	6 cut(s)	76, 82, 284, 302, 328, 393
AluI	AGCT	6 cut(s)	76, 82, 284, 302, 328, 393
Alw26I	GTCTC	1 cut(s)	52
AlwNI	CAGNNNCTG	1 cut(s)	500
ApeKI	GCWGC	3 cut(s)	281, 299, 434
ApoI	RAATTY	1 cut(s)	40
AspLEI	GCGC	1 cut(s)	309
AsuHPI	GGTGA	2 cut(s)	113, 212
BanI	GGYRCC	1 cut(s)	306
BbvI	GCAGC	3 cut(s)	293, 311, 421
BciT130I	CCWGG	1 cut(s)	266
BcoDI	GTCTC	1 cut(s)	52
BcuI	ACTAGT	1 cut(s)	373
BfaI	CTAG	3 cut(s)	329, 374, 404
BfmI	CTRYAG	1 cut(s)	96
BfoI	RGCGCY	1 cut(s)	310
BisI	GCNGC	5 cut(s)	234, 282, 300, 310, 435
BlsI	GCNGC	5 cut(s)	235, 283, 301, 311, 436
Bme1390I	CCNGG	1 cut(s)	266
BmiI	GGNNCC	2 cut(s)	308, 409
BmrFI	CCNGG	1 cut(s)	266
BmsI	GCATC	3 cut(s)	10, 13, 358
BpmI	CTGGAG	4 cut(s)	62, 110, 287, 467
BpuEI	CTTGAG	2 cut(s)	157, 176
BsaBI	GATNNNNATC	1 cut(s)	126
BsaHI	GRCGYC	1 cut(s)	307
BsaJI	CCNNGG	1 cut(s)	264
BsaXI	ACNNNNNCTCC	2 cut(s)	344, 374
Bsc4I	CCNNNNNNNGG	2 cut(s)	16, 404
Bse1I	ACTGG	1 cut(s)	93
Bse3DI	GCAATG	1 cut(s)	473
Bse8I	GATNNNNATC	1 cut(s)	126
BseBI	CCWGG	1 cut(s)	266
BseDI	CCNNGG	1 cut(s)	264
BseGI	GGATG	1 cut(s)	25
BseJI	GATNNNNATC	1 cut(s)	126
BseLI	CCNNNNNNNGG	2 cut(s)	16, 404
BseMI	GCAATG	1 cut(s)	473
BseMII	CTCAG	3 cut(s)	25, 42, 195
BseNI	ACTGG	1 cut(s)	93
BseRI	GAGGAG	1 cut(s)	365
BseXI	GCAGC	3 cut(s)	293, 311, 421
Bsh1236I	CGCG	1 cut(s)	422
BshNI	GGYRCC	1 cut(s)	306
BsiSI	CCGG	1 cut(s)	230
BslI	CCNNNNNNNGG	2 cut(s)	16, 404
BsmAI	GTCTC	1 cut(s)	52
BspACI	CCGC	3 cut(s)	233, 310, 343
BspCNI	CTCAG	3 cut(s)	24, 43, 194
BspFNI	CGCG	1 cut(s)	422
BspLI	GGNNCC	2 cut(s)	308, 409
BspT107I	GGYRCC	1 cut(s)	306
BsrDI	GCAATG	1 cut(s)	473
BsrI	ACTGG	1 cut(s)	93
BssECI	CCNNGG	1 cut(s)	264
BssNI	GRCGYC	1 cut(s)	307
Bst2UI	CCWGG	1 cut(s)	266
Bst4CI	ACNGT	4 cut(s)	63, 116, 216, 317
BstACI	GRCGYC	1 cut(s)	307
BstC8I	GCNNGC	2 cut(s)	286, 492
BstDEI	CTNAG	3 cut(s)	11, 51, 181
BstF5I	GGATG	1 cut(s)	25
BstFNI	CGCG	1 cut(s)	422
BstH2I	RGCGCY	1 cut(s)	310
BstHHI	GCGC	1 cut(s)	309
BstMAI	GTCTC	1 cut(s)	52
BstMWI	GCNNNNNNNGC	1 cut(s)	496
BstNI	CCWGG	1 cut(s)	266
BstSCI	CCNGG	1 cut(s)	264
BstSFI	CTRYAG	1 cut(s)	96
BstUI	CGCG	1 cut(s)	422
BstV1I	GCAGC	3 cut(s)	293, 311, 421
BtsCI	GGATG	1 cut(s)	25
BtsIMutI	CAGTG	1 cut(s)	313
Cac8I	GCNNGC	2 cut(s)	286, 492
CaiI	CAGNNNCTG	1 cut(s)	500
CfoI	GCGC	1 cut(s)	309
Csp6I	GTAC	1 cut(s)	64
CspCI	CAANNNNNGTGG	2 cut(s)	367, 402
CviQI	GTAC	1 cut(s)	64
DdeI	CTNAG	3 cut(s)	11, 51, 181
DinI	GGCGCC	1 cut(s)	308
Eco32I	GATATC	1 cut(s)	124
EcoRI	GAATTC	1 cut(s)	40
EcoRII	CCWGG	1 cut(s)	264
EcoRV	GATATC	1 cut(s)	124
EcoT22I	ATGCAT	1 cut(s)	6
EgeI	GGCGCC	1 cut(s)	308
EheI	GGCGCC	1 cut(s)	308
FaiI	YATR	6 cut(s)	46, 69, 291, 416, 468, 506
Fnu4HI	GCNGC	5 cut(s)	234, 282, 300, 310, 435
FokI	GGATG	1 cut(s)	32
Fsp4HI	GCNGC	5 cut(s)	234, 282, 300, 310, 435
FspBI	CTAG	3 cut(s)	329, 374, 404
GlaI	GCGC	1 cut(s)	308
GluI	GCNGC	5 cut(s)	234, 282, 300, 310, 435
GsuI	CTGGAG	4 cut(s)	62, 110, 287, 467
HaeII	RGCGCY	1 cut(s)	310
HapII	CCGG	1 cut(s)	230
HhaI	GCGC	1 cut(s)	309
Hin1I	GRCGYC	1 cut(s)	307
Hin6I	GCGC	1 cut(s)	307
HinP1I	GCGC	1 cut(s)	307
HinfI	GANTC	2 cut(s)	33, 92
HpaII	CCGG	1 cut(s)	230
HphI	GGTGA	2 cut(s)	113, 212
Hpy166II	GTNNAC	1 cut(s)	212
Hpy188I	TCNGA	1 cut(s)	249
Hpy188III	TCNNGA	5 cut(s)	17, 37, 50, 136, 484
Hpy8I	GTNNAC	1 cut(s)	212
HpyAV	CCTTC	2 cut(s)	98, 153
HpyCH4III	ACNGT	4 cut(s)	63, 116, 216, 317
HpyCH4V	TGCA	5 cut(s)	4, 111, 364, 371, 427
HpyF10VI	GCNNNNNNNGC	1 cut(s)	496
HpyF3I	CTNAG	3 cut(s)	11, 51, 181
Hsp92I	GRCGYC	1 cut(s)	307
HspAI	GCGC	1 cut(s)	307
KasI	GGCGCC	1 cut(s)	306
LmnI	GCTCC	3 cut(s)	81, 87, 398
Lsp1109I	GCAGC	3 cut(s)	293, 311, 421
LweI	GCATC	3 cut(s)	10, 13, 358
MaeI	CTAG	3 cut(s)	329, 374, 404
MaeIII	GTNAC	2 cut(s)	142, 200
MboII	GAAGA	2 cut(s)	163, 166
MluCI	AATT	1 cut(s)	40
Mly113I	GGCGCC	1 cut(s)	307
MlyI	GAGTC	2 cut(s)	27, 101
MnlI	CCTC	4 cut(s)	20, 230, 262, 343
Mph1103I	ATGCAT	1 cut(s)	6
MspI	CCGG	1 cut(s)	230
MspR9I	CCNGG	1 cut(s)	266
MvaI	CCWGG	1 cut(s)	266
MvnI	CGCG	1 cut(s)	422
MwoI	GCNNNNNNNGC	1 cut(s)	496
NarI	GGCGCC	1 cut(s)	307
NlaIV	GGNNCC	2 cut(s)	308, 409
NmuCI	GTSAC	2 cut(s)	142, 200
NsiI	ATGCAT	1 cut(s)	6
PkrI	GCNGC	5 cut(s)	235, 283, 301, 311, 436
PleI	GAGTC	2 cut(s)	27, 100
PluTI	GGCGCC	1 cut(s)	310
PpsI	GAGTC	2 cut(s)	27, 100
Psp6I	CCWGG	1 cut(s)	264
PspGI	CCWGG	1 cut(s)	264
PspN4I	GGNNCC	2 cut(s)	308, 409
PstNI	CAGNNNCTG	1 cut(s)	500
RsaI	GTAC	1 cut(s)	65
RsaNI	GTAC	1 cut(s)	64
SatI	GCNGC	5 cut(s)	234, 282, 300, 310, 435
SchI	GAGTC	2 cut(s)	27, 101
ScrFI	CCNGG	1 cut(s)	266
SfaNI	GCATC	3 cut(s)	10, 13, 358
SfcI	CTRYAG	1 cut(s)	96
SfoI	GGCGCC	1 cut(s)	308
SmlI	CTYRAG	2 cut(s)	136, 191
SmoI	CTYRAG	2 cut(s)	136, 191
SpeI	ACTAGT	1 cut(s)	373
Sse9I	AATT	1 cut(s)	40
SsiI	CCGC	3 cut(s)	233, 310, 343
SspDI	GGCGCC	1 cut(s)	306
SspMI	CTAG	3 cut(s)	329, 374, 404
StyD4I	CCNGG	1 cut(s)	264
TaaI	ACNGT	4 cut(s)	63, 116, 216, 317
TasI	AATT	1 cut(s)	40
TauI	GCSGC	2 cut(s)	236, 312
TscAI	CASTG	1 cut(s)	320
TseFI	GTSAC	2 cut(s)	142, 200
TseI	GCWGC	3 cut(s)	281, 299, 434
Tsp45I	GTSAC	2 cut(s)	142, 200
TspDTI	ATGAA	2 cut(s)	33, 456
TspRI	CASTG	1 cut(s)	320
XapI	RAATTY	1 cut(s)	40
XspI	CTAG	3 cut(s)	329, 374, 404
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.