Rh1AG444500

Cyclic nucleotide-gated ion channel 1-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
Physical Location & Seq
Forward (+)
66488987 .. 66489316
330 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG444500.1

Sequence Viewer

Length: 330 bp
ATGACAGATGACTTGAAGTCTGTAGCCTCTCGGTTCCGGCGGCTTCAGACATTCAGATTTTACTCAAATCCCTGGAGGACTTGGGCAGCTTGCTATATTCAAGCAGCTTATTGGCGCCGCCATTGCAAGAAGAAGCTAGAGAAGTCTTTGCGGAAAGAGGAGAATAGGTTGCAAGATGCACTAGTCAAGGCTGGTGGAAGCTCCCCAACTCTAGGTTCCACCATATACGCCTTGCGTTTTGCTGCTAATGCACTTCGTGCTATTAGGCACAACGATTGCTACTCCAGAAGCCAGCAGAGCCTGATATATCTGCTCAAAAGCAACATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

109

Amino Acids

12.8

Weight (kDa)

10.37

Isoelectric Point (pI)

67.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0025556)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0003249.1_g000006
rosa_samantha Rh1AG444500 Rh1CG413700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 114
AciI CCGC 3 cut(s) 40, 118, 151
AcuI CTGAAG 1 cut(s) 29
AcyI GRCGYC 1 cut(s) 115
AdeI CACNNNGTG 1 cut(s) 257
AfiI CCNNNNNNNGG 1 cut(s) 212
AflIII ACRYGT 1 cut(s) 324
AgsI TTSAA 2 cut(s) 16, 101
AhdI GACNNNNNGTC 1 cut(s) 16
AhlI ACTAGT 1 cut(s) 181
AjnI CCWGG 1 cut(s) 71
AjuI GAANNNNNNNTTGG 2 cut(s) 199, 231
AluBI AGCT 4 cut(s) 89, 107, 136, 201
AluI AGCT 4 cut(s) 89, 107, 136, 201
AlwNI CAGNNNCTG 1 cut(s) 301
ApeKI GCWGC 3 cut(s) 86, 104, 242
AspLEI GCGC 1 cut(s) 117
BanI GGYRCC 1 cut(s) 114
BbvI GCAGC 3 cut(s) 98, 116, 229
BciT130I CCWGG 1 cut(s) 73
BcuI ACTAGT 1 cut(s) 181
BfaI CTAG 3 cut(s) 137, 182, 212
BfmI CTRYAG 1 cut(s) 21
BfoI RGCGCY 1 cut(s) 118
BisI GCNGC 5 cut(s) 41, 87, 105, 118, 243
BlsI GCNGC 5 cut(s) 42, 88, 106, 119, 244
Bme1390I CCNGG 1 cut(s) 73
BmeRI GACNNNNNGTC 1 cut(s) 16
BmiI GGNNCC 3 cut(s) 35, 116, 217
BmrFI CCNGG 1 cut(s) 73
BmsI GCATC 1 cut(s) 166
BpmI CTGGAG 2 cut(s) 94, 268
BsaHI GRCGYC 1 cut(s) 115
BsaJI CCNNGG 1 cut(s) 71
BsaXI ACNNNNNCTCC 2 cut(s) 152, 182
Bsc4I CCNNNNNNNGG 1 cut(s) 212
Bse3DI GCAATG 1 cut(s) 121
BseBI CCWGG 1 cut(s) 73
BseDI CCNNGG 1 cut(s) 71
BseLI CCNNNNNNNGG 1 cut(s) 212
BseMI GCAATG 1 cut(s) 121
BseRI GAGGAG 1 cut(s) 173
BseXI GCAGC 3 cut(s) 98, 116, 229
BshNI GGYRCC 1 cut(s) 114
BsiSI CCGG 1 cut(s) 37
BslI CCNNNNNNNGG 1 cut(s) 212
BspACI CCGC 3 cut(s) 40, 118, 151
BspLI GGNNCC 3 cut(s) 35, 116, 217
BspT107I GGYRCC 1 cut(s) 114
BsrDI GCAATG 1 cut(s) 121
BssECI CCNNGG 1 cut(s) 71
BssNI GRCGYC 1 cut(s) 115
Bst2UI CCWGG 1 cut(s) 73
BstACI GRCGYC 1 cut(s) 115
BstAPI GCANNNNNTGC 1 cut(s) 257
BstC8I GCNNGC 2 cut(s) 91, 293
BstH2I RGCGCY 1 cut(s) 118
BstHHI GCGC 1 cut(s) 117
BstMWI GCNNNNNNNGC 4 cut(s) 123, 248, 257, 297
BstNI CCWGG 1 cut(s) 73
BstNSI RCATGY 1 cut(s) 328
BstSCI CCNGG 1 cut(s) 71
BstSFI CTRYAG 1 cut(s) 21
BstV1I GCAGC 3 cut(s) 98, 116, 229
Cac8I GCNNGC 2 cut(s) 91, 293
CaiI CAGNNNCTG 1 cut(s) 301
CfoI GCGC 1 cut(s) 117
CspCI CAANNNNNGTGG 2 cut(s) 175, 210
CviAII CATG 1 cut(s) 325
CviJI RGCY 9 cut(s) 26, 43, 89, 107, 136, 191, 201, 291, 300
CviKI_1 RGCY 9 cut(s) 26, 43, 89, 107, 136, 191, 201, 291, 300
DinI GGCGCC 1 cut(s) 116
DraIII CACNNNGTG 1 cut(s) 257
DriI GACNNNNNGTC 1 cut(s) 16
Eam1105I GACNNNNNGTC 1 cut(s) 16
Eco57I CTGAAG 1 cut(s) 29
EcoRII CCWGG 1 cut(s) 71
EgeI GGCGCC 1 cut(s) 116
EheI GGCGCC 1 cut(s) 116
FaeI CATG 1 cut(s) 328
FaiI YATR 5 cut(s) 96, 224, 226, 307, 326
FatI CATG 1 cut(s) 324
Fnu4HI GCNGC 5 cut(s) 41, 87, 105, 118, 243
Fsp4HI GCNGC 5 cut(s) 41, 87, 105, 118, 243
FspBI CTAG 3 cut(s) 137, 182, 212
GlaI GCGC 1 cut(s) 116
GluI GCNGC 5 cut(s) 41, 87, 105, 118, 243
GsuI CTGGAG 2 cut(s) 94, 268
HaeII RGCGCY 1 cut(s) 118
HapII CCGG 1 cut(s) 37
HhaI GCGC 1 cut(s) 117
Hin1I GRCGYC 1 cut(s) 115
Hin1II CATG 1 cut(s) 328
Hin6I GCGC 1 cut(s) 115
HinP1I GCGC 1 cut(s) 115
HpaII CCGG 1 cut(s) 37
Hpy188I TCNGA 2 cut(s) 48, 56
Hpy188III TCNNGA 1 cut(s) 285
HpyCH4V TGCA 4 cut(s) 126, 172, 179, 251
HpyF10VI GCNNNNNNNGC 4 cut(s) 123, 248, 257, 297
Hsp92I GRCGYC 1 cut(s) 115
Hsp92II CATG 1 cut(s) 328
HspAI GCGC 1 cut(s) 115
KasI GGCGCC 1 cut(s) 114
LmnI GCTCC 1 cut(s) 206
LpnPI CCDG 7 cut(s) 50, 58, 85, 177, 298, 305, 314
Lsp1109I GCAGC 3 cut(s) 98, 116, 229
LweI GCATC 1 cut(s) 166
MaeI CTAG 3 cut(s) 137, 182, 212
MboII GAAGA 1 cut(s) 142
Mly113I GGCGCC 1 cut(s) 115
MnlI CCTC 3 cut(s) 37, 69, 151
MspI CCGG 1 cut(s) 37
MspR9I CCNGG 1 cut(s) 73
MvaI CCWGG 1 cut(s) 73
MwoI GCNNNNNNNGC 4 cut(s) 123, 248, 257, 297
NarI GGCGCC 1 cut(s) 115
NlaIII CATG 1 cut(s) 328
NlaIV GGNNCC 3 cut(s) 35, 116, 217
NspI RCATGY 1 cut(s) 328
PciI ACATGT 1 cut(s) 324
PkrI GCNGC 5 cut(s) 42, 88, 106, 119, 244
PluTI GGCGCC 1 cut(s) 118
PscI ACATGT 1 cut(s) 324
Psp6I CCWGG 1 cut(s) 71
PspGI CCWGG 1 cut(s) 71
PspN4I GGNNCC 3 cut(s) 35, 116, 217
PstNI CAGNNNCTG 1 cut(s) 301
SatI GCNGC 5 cut(s) 41, 87, 105, 118, 243
ScrFI CCNGG 1 cut(s) 73
SetI ASST 6 cut(s) 91, 109, 138, 170, 203, 217
SfaNI GCATC 1 cut(s) 166
SfcI CTRYAG 1 cut(s) 21
SfoI GGCGCC 1 cut(s) 116
SpeI ACTAGT 1 cut(s) 181
SsiI CCGC 3 cut(s) 40, 118, 151
SspDI GGCGCC 1 cut(s) 114
SspMI CTAG 3 cut(s) 137, 182, 212
StyD4I CCNGG 1 cut(s) 71
TauI GCSGC 2 cut(s) 43, 120
TseI GCWGC 3 cut(s) 86, 104, 242
XceI RCATGY 1 cut(s) 328
XspI CTAG 3 cut(s) 137, 182, 212
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.