Rh1CG413700

Cyclic nucleotide-gated ion channel 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0025556
Physical Location & Seq
Forward (+)
67577952 .. 67578541
590 bp
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UTR
Exon/CDS
Intron
Rh1CG413700.1

Sequence Viewer

Length: 333 bp
ATGAGGAGGAGAACCAATGGGTGCGATGCTCTTCATAATATTTTACTCAAACCCTGGAGGACTTGGGCAGCTTGCTATATTCAAGCCGCTTGGCGCCGCCACTGTAAGAAAAAGCTAGAGAAGTCTTTGCGGAAAGAGGAGAATAGGTTGCAAGATGCACTAGTCAAGGCTGGTGGAAGCTCCCCAACTCTAGGTTCCACCATATTCGCGTTGCATTTTGCTGCTAATGAACTTCGTGCTATTAGGCACAACCATAGGTCATTGCTACTCCAGAAGCCAGCAGAGCCTGATATATCTGCTCAAAAGCAACAGGCAGTAGTCTTTCGGGTTTGA

Protein Analysis

110

Amino Acids

12.64

Weight (kDa)

10.73

Isoelectric Point (pI)

66.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0025556)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0003249.1_g000006
rosa_samantha Rh1AG444500 Rh1CG413700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 93
AccII CGCG 1 cut(s) 209
AciI CCGC 3 cut(s) 87, 97, 130
AcyI GRCGYC 1 cut(s) 94
AfiI CCNNNNNNNGG 1 cut(s) 191
AgsI TTSAA 1 cut(s) 83
AhlI ACTAGT 1 cut(s) 160
AjnI CCWGG 1 cut(s) 53
AjuI GAANNNNNNNTTGG 2 cut(s) 178, 210
AluBI AGCT 3 cut(s) 71, 115, 180
AluI AGCT 3 cut(s) 71, 115, 180
AlwNI CAGNNNCTG 1 cut(s) 287
ApeKI GCWGC 2 cut(s) 68, 221
AspLEI GCGC 1 cut(s) 96
BanI GGYRCC 1 cut(s) 93
BbvI GCAGC 2 cut(s) 80, 208
BciT130I CCWGG 1 cut(s) 55
BcuI ACTAGT 1 cut(s) 160
BfaI CTAG 3 cut(s) 116, 161, 191
BfoI RGCGCY 1 cut(s) 97
BisI GCNGC 4 cut(s) 69, 87, 97, 222
BlsI GCNGC 4 cut(s) 70, 88, 98, 223
Bme1390I CCNGG 1 cut(s) 55
BmiI GGNNCC 2 cut(s) 95, 196
BmrFI CCNGG 1 cut(s) 55
BmsI GCATC 2 cut(s) 16, 145
BpmI CTGGAG 2 cut(s) 76, 254
BsaHI GRCGYC 1 cut(s) 94
BsaJI CCNNGG 1 cut(s) 53
BsaXI ACNNNNNCTCC 2 cut(s) 131, 161
Bsc4I CCNNNNNNNGG 1 cut(s) 191
Bse3DI GCAATG 1 cut(s) 260
BseBI CCWGG 1 cut(s) 55
BseDI CCNNGG 1 cut(s) 53
BseLI CCNNNNNNNGG 1 cut(s) 191
BseMI GCAATG 1 cut(s) 260
BseRI GAGGAG 3 cut(s) 19, 22, 152
BseXI GCAGC 2 cut(s) 80, 208
Bsh1236I CGCG 1 cut(s) 209
BshNI GGYRCC 1 cut(s) 93
BslI CCNNNNNNNGG 1 cut(s) 191
BspACI CCGC 3 cut(s) 87, 97, 130
BspFNI CGCG 1 cut(s) 209
BspLI GGNNCC 2 cut(s) 95, 196
BspQI GCTCTTC 1 cut(s) 36
BspT107I GGYRCC 1 cut(s) 93
BsrDI GCAATG 1 cut(s) 260
BssECI CCNNGG 1 cut(s) 53
BssNI GRCGYC 1 cut(s) 94
Bst2UI CCWGG 1 cut(s) 55
Bst4CI ACNGT 1 cut(s) 104
Bst6I CTCTTC 1 cut(s) 36
BstACI GRCGYC 1 cut(s) 94
BstC8I GCNNGC 2 cut(s) 73, 279
BstFNI CGCG 1 cut(s) 209
BstH2I RGCGCY 1 cut(s) 97
BstHHI GCGC 1 cut(s) 96
BstMWI GCNNNNNNNGC 1 cut(s) 283
BstNI CCWGG 1 cut(s) 55
BstSCI CCNGG 1 cut(s) 53
BstUI CGCG 1 cut(s) 209
BstV1I GCAGC 2 cut(s) 80, 208
BtgZI GCGATG 1 cut(s) 39
BtsIMutI CAGTG 1 cut(s) 100
Cac8I GCNNGC 2 cut(s) 73, 279
CaiI CAGNNNCTG 1 cut(s) 287
CfoI GCGC 1 cut(s) 96
CspCI CAANNNNNGTGG 2 cut(s) 154, 189
CviJI RGCY 7 cut(s) 71, 86, 115, 170, 180, 277, 286
CviKI_1 RGCY 7 cut(s) 71, 86, 115, 170, 180, 277, 286
DinI GGCGCC 1 cut(s) 95
Eam1104I CTCTTC 1 cut(s) 36
EarI CTCTTC 1 cut(s) 36
EcoRII CCWGG 1 cut(s) 53
EgeI GGCGCC 1 cut(s) 95
EheI GGCGCC 1 cut(s) 95
FaiI YATR 5 cut(s) 36, 78, 203, 255, 293
Fnu4HI GCNGC 4 cut(s) 69, 87, 97, 222
Fsp4HI GCNGC 4 cut(s) 69, 87, 97, 222
FspBI CTAG 3 cut(s) 116, 161, 191
GlaI GCGC 1 cut(s) 95
GluI GCNGC 4 cut(s) 69, 87, 97, 222
GsuI CTGGAG 2 cut(s) 76, 254
HaeII RGCGCY 1 cut(s) 97
HhaI GCGC 1 cut(s) 96
Hin1I GRCGYC 1 cut(s) 94
Hin6I GCGC 1 cut(s) 94
HinP1I GCGC 1 cut(s) 94
Hpy188III TCNNGA 1 cut(s) 271
HpyCH4III ACNGT 1 cut(s) 104
HpyCH4V TGCA 3 cut(s) 151, 158, 214
HpyF10VI GCNNNNNNNGC 1 cut(s) 283
Hsp92I GRCGYC 1 cut(s) 94
HspAI GCGC 1 cut(s) 94
KasI GGCGCC 1 cut(s) 93
LguI GCTCTTC 1 cut(s) 36
LmnI GCTCC 1 cut(s) 185
LpnPI CCDG 7 cut(s) 40, 67, 156, 284, 291, 296, 300
Lsp1109I GCAGC 2 cut(s) 80, 208
LweI GCATC 2 cut(s) 16, 145
MaeI CTAG 3 cut(s) 116, 161, 191
MboII GAAGA 1 cut(s) 23
Mly113I GGCGCC 1 cut(s) 94
MnlI CCTC 2 cut(s) 51, 130
MspR9I CCNGG 1 cut(s) 55
MvaI CCWGG 1 cut(s) 55
MvnI CGCG 1 cut(s) 209
MwoI GCNNNNNNNGC 1 cut(s) 283
NarI GGCGCC 1 cut(s) 94
NlaIV GGNNCC 2 cut(s) 95, 196
PciSI GCTCTTC 1 cut(s) 36
PkrI GCNGC 4 cut(s) 70, 88, 98, 223
PluTI GGCGCC 1 cut(s) 97
Psp6I CCWGG 1 cut(s) 53
PspGI CCWGG 1 cut(s) 53
PspN4I GGNNCC 2 cut(s) 95, 196
PstNI CAGNNNCTG 1 cut(s) 287
SapI GCTCTTC 1 cut(s) 36
SatI GCNGC 4 cut(s) 69, 87, 97, 222
ScrFI CCNGG 1 cut(s) 55
SetI ASST 6 cut(s) 73, 117, 149, 182, 196, 260
SfaNI GCATC 2 cut(s) 16, 145
SfoI GGCGCC 1 cut(s) 95
SpeI ACTAGT 1 cut(s) 160
SsiI CCGC 3 cut(s) 87, 97, 130
SspDI GGCGCC 1 cut(s) 93
SspI AATATT 1 cut(s) 40
SspMI CTAG 3 cut(s) 116, 161, 191
StyD4I CCNGG 1 cut(s) 53
TaaI ACNGT 1 cut(s) 104
TauI GCSGC 2 cut(s) 89, 99
TscAI CASTG 1 cut(s) 107
TseI GCWGC 2 cut(s) 68, 221
TspDTI ATGAA 2 cut(s) 23, 243
TspRI CASTG 1 cut(s) 107
XspI CTAG 3 cut(s) 116, 161, 191
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.