Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003291.1

Orthogroup ID

OG0022371

Physical Location & Seq

Genomic Coordinates Forward (+)

36930 .. 37322

Gene Structure 393 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003291.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

atgagctctacctttgcagccaagcctgagaagctccacatagctttgttcccatggcttgccttcggtcacataatcccatttcttgaggttgccaagtacatagctcgcagaggccacaaggtttccttcatttccacacctagaaacatccaacgcctcccgaaaatcccacaaaatctaacccctctgatcactctagtccaaatcccactcccccgagtcaaaaacctccccgaaaacgcagaggccaccatggacgtcccaaacgacgtcatcccatacctcaaaatagctcatgatggactcgaacaaggtatctctgaattcctcaaaacacacgctcccgattggatcatttatgactttgcccatactggttgcctccaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

130

Amino Acids

14.7

Weight (kDa)

8.79

Isoelectric Point (pI)

45.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0022371)

Species	Orthologous Gene IDs
malus_domestica	MD02G1083700.v1.1
rosa_multiflora	Rmu_sc0003291.1_g000007 Rmu_sc0003291.1_g000033
rosa_samantha	Rh2DG227800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	264, 276
AclWI	GGATC	1 cut(s)	362
AcsI	RAATTY	1 cut(s)	326
AcyI	GRCGYC	2 cut(s)	261, 273
AfaI	GTAC	1 cut(s)	101
AluBI	AGCT	5 cut(s)	6, 34, 44, 107, 296
AluI	AGCT	5 cut(s)	6, 34, 44, 107, 296
Alw21I	GWGCWC	1 cut(s)	8
AlwI	GGATC	1 cut(s)	362
Ama87I	CYCGRG	1 cut(s)	219
AoxI	GGCC	2 cut(s)	115, 249
ApeKI	GCWGC	1 cut(s)	17
ApoI	RAATTY	1 cut(s)	326
AvaI	CYCGRG	1 cut(s)	219
BanII	GRGCYC	1 cut(s)	8
Bbv12I	GWGCWC	1 cut(s)	8
BbvI	GCAGC	1 cut(s)	29
BccI	CCATC	1 cut(s)	296
BclI	TGATCA	1 cut(s)	192
BfaI	CTAG	2 cut(s)	144, 200
BisI	GCNGC	1 cut(s)	18
BlsI	GCNGC	1 cut(s)	19
BmeT110I	CYCGRG	1 cut(s)	219
BpuEI	CTTGAG	1 cut(s)	107
BsaHI	GRCGYC	2 cut(s)	261, 273
BsaJI	CCNNGG	2 cut(s)	53, 255
BsaXI	ACNNNNNCTCC	2 cut(s)	328, 358
Bse1I	ACTGG	1 cut(s)	382
BseDI	CCNNGG	2 cut(s)	53, 255
BseGI	GGATG	2 cut(s)	150, 276
BseMII	CTCAG	1 cut(s)	18
BseNI	ACTGG	1 cut(s)	382
BseXI	GCAGC	1 cut(s)	29
BshFI	GGCC	2 cut(s)	117, 251
BsiHKAI	GWGCWC	1 cut(s)	8
BsiHKCI	CYCGRG	1 cut(s)	219
BslFI	GGGAC	1 cut(s)	248
BsmFI	GGGAC	1 cut(s)	248
BsnI	GGCC	2 cut(s)	117, 251
BsoBI	CYCGRG	1 cut(s)	219
Bsp1286I	GDGCHC	1 cut(s)	8
Bsp143I	GATC	2 cut(s)	192, 354
Bsp19I	CCATGG	2 cut(s)	53, 255
BspANI	GGCC	2 cut(s)	117, 251
BspCNI	CTCAG	1 cut(s)	19
BspHI	TCATGA	1 cut(s)	298
BspPI	GGATC	1 cut(s)	362
BsrI	ACTGG	1 cut(s)	382
BssECI	CCNNGG	2 cut(s)	53, 255
BssMI	GATC	2 cut(s)	192, 354
BssNI	GRCGYC	2 cut(s)	261, 273
BssT1I	CCWWGG	2 cut(s)	53, 255
BstACI	GRCGYC	2 cut(s)	261, 273
BstC8I	GCNNGC	2 cut(s)	60, 109
BstDEI	CTNAG	1 cut(s)	27
BstDSI	CCRYGG	2 cut(s)	53, 255
BstF5I	GGATG	2 cut(s)	150, 276
BstKTI	GATC	2 cut(s)	195, 357
BstMBI	GATC	2 cut(s)	192, 354
BstMWI	GCNNNNNNNGC	1 cut(s)	31
BstV1I	GCAGC	1 cut(s)	29
BsuRI	GGCC	2 cut(s)	117, 251
BtgI	CCRYGG	2 cut(s)	53, 255
BtsCI	GGATG	2 cut(s)	150, 276
Cac8I	GCNNGC	2 cut(s)	60, 109
CciI	TCATGA	1 cut(s)	298
Csp6I	GTAC	1 cut(s)	100
CviAII	CATG	3 cut(s)	54, 256, 299
CviQI	GTAC	1 cut(s)	100
DdeI	CTNAG	1 cut(s)	27
DpnI	GATC	2 cut(s)	194, 356
DpnII	GATC	2 cut(s)	192, 354
Ecl136II	GAGCTC	1 cut(s)	6
Eco130I	CCWWGG	2 cut(s)	53, 255
Eco24I	GRGCYC	1 cut(s)	8
Eco53kI	GAGCTC	1 cut(s)	6
Eco88I	CYCGRG	1 cut(s)	219
EcoICRI	GAGCTC	1 cut(s)	6
EcoRI	GAATTC	1 cut(s)	326
EcoT14I	CCWWGG	2 cut(s)	53, 255
EcoT38I	GRGCYC	1 cut(s)	8
ErhI	CCWWGG	2 cut(s)	53, 255
FaeI	CATG	3 cut(s)	57, 259, 302
FaiI	YATR	9 cut(s)	41, 55, 74, 104, 257, 283, 300, 363, 375
FalI	AAGNNNNNCTT	2 cut(s)	113, 145
FaqI	GGGAC	1 cut(s)	248
FatI	CATG	3 cut(s)	53, 255, 298
FbaI	TGATCA	1 cut(s)	192
Fnu4HI	GCNGC	1 cut(s)	18
FokI	GGATG	2 cut(s)	137, 263
FriOI	GRGCYC	1 cut(s)	8
Fsp4HI	GCNGC	1 cut(s)	18
FspBI	CTAG	2 cut(s)	144, 200
GluI	GCNGC	1 cut(s)	18
HaeIII	GGCC	2 cut(s)	117, 251
Hin1I	GRCGYC	2 cut(s)	261, 273
Hin1II	CATG	3 cut(s)	57, 259, 302
HinfI	GANTC	2 cut(s)	222, 306
Hpy188I	TCNGA	2 cut(s)	192, 325
Hpy188III	TCNNGA	4 cut(s)	86, 163, 299, 347
Hpy99I	CGWCG	1 cut(s)	275
HpyAV	CCTTC	2 cut(s)	73, 139
HpyCH4IV	ACGT	2 cut(s)	261, 273
HpyCH4V	TGCA	1 cut(s)	17
HpyF10VI	GCNNNNNNNGC	1 cut(s)	31
HpyF3I	CTNAG	1 cut(s)	27
HpySE526I	ACGT	2 cut(s)	261, 273
Hsp92I	GRCGYC	2 cut(s)	261, 273
Hsp92II	CATG	3 cut(s)	57, 259, 302
Ksp22I	TGATCA	1 cut(s)	192
Kzo9I	GATC	2 cut(s)	192, 354
LmnI	GCTCC	2 cut(s)	39, 349
LpnPI	CCDG	2 cut(s)	39, 363
Lsp1109I	GCAGC	1 cut(s)	29
MaeI	CTAG	2 cut(s)	144, 200
MaeII	ACGT	2 cut(s)	261, 273
MaeIII	GTNAC	1 cut(s)	68
MalI	GATC	2 cut(s)	194, 356
MboI	GATC	2 cut(s)	192, 354
MhlI	GDGCHC	1 cut(s)	8
MluCI	AATT	1 cut(s)	326
MlyI	GAGTC	2 cut(s)	231, 300
MmeI	TCCRAC	1 cut(s)	178
MnlI	CCTC	8 cut(s)	82, 107, 170, 198, 241, 242, 296, 341
MwoI	GCNNNNNNNGC	1 cut(s)	31
NcoI	CCATGG	2 cut(s)	53, 255
NdeII	GATC	2 cut(s)	192, 354
NlaIII	CATG	3 cut(s)	57, 259, 302
NmuCI	GTSAC	1 cut(s)	68
PagI	TCATGA	1 cut(s)	298
PcsI	WCGNNNNNNNCGW	1 cut(s)	267
PkrI	GCNGC	1 cut(s)	19
PleI	GAGTC	2 cut(s)	230, 300
PpsI	GAGTC	2 cut(s)	230, 300
Psp124BI	GAGCTC	1 cut(s)	8
RsaI	GTAC	1 cut(s)	101
RsaNI	GTAC	1 cut(s)	100
SacI	GAGCTC	1 cut(s)	8
SatI	GCNGC	1 cut(s)	18
Sau3AI	GATC	2 cut(s)	192, 354
SchI	GAGTC	2 cut(s)	231, 300
SduI	GDGCHC	1 cut(s)	8
SmlI	CTYRAG	1 cut(s)	86
SmoI	CTYRAG	1 cut(s)	86
Sse9I	AATT	1 cut(s)	326
SspMI	CTAG	2 cut(s)	144, 200
SstI	GAGCTC	1 cut(s)	8
StyI	CCWWGG	2 cut(s)	53, 255
TaiI	ACGT	2 cut(s)	264, 276
TaqI	TCGA	1 cut(s)	309
TaqII	GACCGA	1 cut(s)	56
TasI	AATT	1 cut(s)	326
TatI	WGTACW	1 cut(s)	99
TseFI	GTSAC	1 cut(s)	68
TseI	GCWGC	1 cut(s)	17
Tsp45I	GTSAC	1 cut(s)	68
TspDTI	ATGAA	1 cut(s)	121
XapI	RAATTY	1 cut(s)	326
XspI	CTAG	2 cut(s)	144, 200
ZraI	GACGTC	2 cut(s)	262, 274

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.