Rh2DG227800

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0022371
Physical Location & Seq
Forward (+)
22521243 .. 22521899
657 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG227800.1

Sequence Viewer

Length: 657 bp
ATGAACTCTACATCTGCAACTAAGCATGAGAAGCTCCACATAGCTTTGTTCCCATGGCTTGCCTTCGGTCACATAATCCCATTTCTTGAGGTTGCCAAGCACATAGCTCGCAGAGGCCACAAGGTTTCCTTCATTTCCACACCTAGAAACATCCAACGCTTGCCGAAGATCCCACAAAACCTAACCCCTCTGATAACTCTAGTTCAAATCCCTCTCCCCCGCGTCAAAAATCTCCCCGAAAACGCAGAGGCCACCATGGACGTCCCATACGACGCTATCCCATACCTCAAAATAGCTCATGATGGACTCGAACAAGGTATCTCTGAATTCCTTCAAGCACATGCTCCGGATTGGATTATTCACGATTTTGCCCCTCACTGGTTGCCACCAATAGCGATCAAGCTCGGCATCTCACGAGCCCATTTCAGTATCTTCAATGCATCAAGTCTATGTTTCCTTGGACCAACATCACCAGTTCTAGTGTCTCGCTATGGTCCTAGAACACAGCCCGAGCATTTCACTGTCCCTCCCGAATGGATTCCCTTTCCGTCCAAACTATATTTTAGGCTTTTCGAGGCCAAGAGACTGGTGGATGGTAGTATGGAACCAAATGATTCTGGGGTGACTGACTGGTTTCGTTTGGAATCAACTGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

218

Amino Acids

24.71

Weight (kDa)

8.72

Isoelectric Point (pI)

43.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0022371)

Species Orthologous Gene IDs
malus_domestica MD02G1083700.v1.1
rosa_multiflora Rmu_sc0003291.1_g000007 Rmu_sc0003291.1_g000033
rosa_samantha Rh2DG227800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 264
AccII CGCG 1 cut(s) 222
AccIII TCCGGA 1 cut(s) 346
AciI CCGC 1 cut(s) 220
AclWI GGATC 1 cut(s) 163
AcsI RAATTY 1 cut(s) 326
AcyI GRCGYC 1 cut(s) 261
AfiI CCNNNNNNNGG 1 cut(s) 378
AgsI TTSAA 3 cut(s) 206, 335, 436
AluBI AGCT 5 cut(s) 34, 44, 107, 296, 403
AluI AGCT 5 cut(s) 34, 44, 107, 296, 403
Alw26I GTCTC 2 cut(s) 489, 577
AlwI GGATC 1 cut(s) 163
Ama87I CYCGRG 1 cut(s) 509
Aor13HI TCCGGA 1 cut(s) 346
AoxI GGCC 3 cut(s) 115, 249, 576
ApoI RAATTY 1 cut(s) 326
Asp700I GAANNNNTTC 2 cut(s) 330, 537
AspS9I GGNCC 2 cut(s) 461, 494
AsuHPI GGTGA 2 cut(s) 462, 634
AvaI CYCGRG 1 cut(s) 509
AvaII GGWCC 2 cut(s) 461, 494
BanII GRGCYC 1 cut(s) 421
BauI CACGAG 1 cut(s) 414
BccI CCATC 2 cut(s) 296, 587
BcgI CGANNNNNNTGC 2 cut(s) 89, 123
BcoDI GTCTC 2 cut(s) 489, 577
BfaI CTAG 4 cut(s) 144, 200, 479, 498
Bme18I GGWCC 2 cut(s) 461, 494
BmeT110I CYCGRG 1 cut(s) 509
BmgT120I GGNCC 2 cut(s) 461, 494
BmiI GGNNCC 1 cut(s) 606
BmsI GCATC 2 cut(s) 417, 449
BpuEI CTTGAG 1 cut(s) 107
BsaHI GRCGYC 1 cut(s) 261
BsaJI CCNNGG 3 cut(s) 53, 255, 457
BsaWI WCCGGW 1 cut(s) 346
BsaXI ACNNNNNCTCC 2 cut(s) 511, 541
Bsc4I CCNNNNNNNGG 1 cut(s) 378
Bse1I ACTGG 4 cut(s) 383, 473, 591, 635
BseAI TCCGGA 1 cut(s) 346
BseDI CCNNGG 3 cut(s) 53, 255, 457
BseGI GGATG 2 cut(s) 150, 598
BseLI CCNNNNNNNGG 1 cut(s) 378
BseNI ACTGG 4 cut(s) 383, 473, 591, 635
Bsh1236I CGCG 1 cut(s) 222
BshFI GGCC 3 cut(s) 117, 251, 578
BsiHKCI CYCGRG 1 cut(s) 509
BsiSI CCGG 1 cut(s) 347
BslFI GGGAC 2 cut(s) 248, 509
BslI CCNNNNNNNGG 1 cut(s) 378
BsmAI GTCTC 2 cut(s) 489, 577
BsmFI GGGAC 2 cut(s) 248, 509
BsnI GGCC 3 cut(s) 117, 251, 578
BsoBI CYCGRG 1 cut(s) 509
Bsp1286I GDGCHC 1 cut(s) 421
Bsp13I TCCGGA 1 cut(s) 346
Bsp143I GATC 2 cut(s) 168, 396
Bsp19I CCATGG 2 cut(s) 53, 255
BspACI CCGC 1 cut(s) 220
BspANI GGCC 3 cut(s) 117, 251, 578
BspEI TCCGGA 1 cut(s) 346
BspFNI CGCG 1 cut(s) 222
BspHI TCATGA 1 cut(s) 298
BspLI GGNNCC 1 cut(s) 606
BspPI GGATC 1 cut(s) 163
BsrI ACTGG 4 cut(s) 383, 473, 591, 635
BssECI CCNNGG 3 cut(s) 53, 255, 457
BssMI GATC 2 cut(s) 168, 396
BssNI GRCGYC 1 cut(s) 261
BssSI CACGAG 1 cut(s) 414
BssT1I CCWWGG 3 cut(s) 53, 255, 457
Bst2BI CACGAG 1 cut(s) 414
Bst4CI ACNGT 2 cut(s) 523, 652
BstACI GRCGYC 1 cut(s) 261
BstC8I GCNNGC 3 cut(s) 60, 109, 161
BstDEI CTNAG 1 cut(s) 21
BstDSI CCRYGG 2 cut(s) 53, 255
BstF5I GGATG 2 cut(s) 150, 598
BstFNI CGCG 1 cut(s) 222
BstKTI GATC 2 cut(s) 171, 399
BstMAI GTCTC 2 cut(s) 489, 577
BstMBI GATC 2 cut(s) 168, 396
BstMWI GCNNNNNNNGC 1 cut(s) 31
BstNSI RCATGY 1 cut(s) 344
BstUI CGCG 1 cut(s) 222
BstX2I RGATCY 1 cut(s) 168
BstXI CCANNNNNNTGG 1 cut(s) 586
BstYI RGATCY 1 cut(s) 168
BsuRI GGCC 3 cut(s) 117, 251, 578
BtgI CCRYGG 2 cut(s) 53, 255
BtsCI GGATG 2 cut(s) 150, 598
BtsIMutI CAGTG 2 cut(s) 376, 519
Cac8I GCNNGC 3 cut(s) 60, 109, 161
CciI TCATGA 1 cut(s) 298
Cfr13I GGNCC 2 cut(s) 461, 494
CseI GACGC 2 cut(s) 211, 281
CviAII CATG 5 cut(s) 26, 54, 256, 299, 341
DdeI CTNAG 1 cut(s) 21
DpnI GATC 2 cut(s) 170, 398
DpnII GATC 2 cut(s) 168, 396
Eco130I CCWWGG 3 cut(s) 53, 255, 457
Eco24I GRGCYC 1 cut(s) 421
Eco47I GGWCC 2 cut(s) 461, 494
Eco88I CYCGRG 1 cut(s) 509
EcoRI GAATTC 1 cut(s) 326
EcoT14I CCWWGG 3 cut(s) 53, 255, 457
EcoT22I ATGCAT 1 cut(s) 442
EcoT38I GRGCYC 1 cut(s) 421
ErhI CCWWGG 3 cut(s) 53, 255, 457
FaeI CATG 5 cut(s) 29, 57, 259, 302, 344
FalI AAGNNNNNCTT 2 cut(s) 113, 145
FaqI GGGAC 2 cut(s) 248, 509
FatI CATG 5 cut(s) 25, 53, 255, 298, 340
FauI CCCGC 1 cut(s) 227
FokI GGATG 2 cut(s) 137, 605
FriOI GRGCYC 1 cut(s) 421
FspBI CTAG 4 cut(s) 144, 200, 479, 498
HaeIII GGCC 3 cut(s) 117, 251, 578
HapII CCGG 1 cut(s) 347
HgaI GACGC 2 cut(s) 211, 281
Hin1I GRCGYC 1 cut(s) 261
Hin1II CATG 5 cut(s) 29, 57, 259, 302, 344
HinfI GANTC 4 cut(s) 306, 538, 614, 644
HpaII CCGG 1 cut(s) 347
HphI GGTGA 2 cut(s) 462, 634
Hpy188I TCNGA 2 cut(s) 192, 325
Hpy188III TCNNGA 6 cut(s) 86, 299, 347, 362, 414, 530
Hpy99I CGWCG 1 cut(s) 275
HpyAV CCTTC 3 cut(s) 73, 139, 341
HpyCH4III ACNGT 2 cut(s) 523, 652
HpyCH4IV ACGT 1 cut(s) 261
HpyCH4V TGCA 2 cut(s) 17, 440
HpyF10VI GCNNNNNNNGC 1 cut(s) 31
HpyF3I CTNAG 1 cut(s) 21
HpySE526I ACGT 1 cut(s) 261
Hsp92I GRCGYC 1 cut(s) 261
Hsp92II CATG 5 cut(s) 29, 57, 259, 302, 344
Kpn2I TCCGGA 1 cut(s) 346
Kzo9I GATC 2 cut(s) 168, 396
LmnI GCTCC 2 cut(s) 39, 349
LpnPI CCDG 6 cut(s) 360, 364, 486, 572, 603, 616
LweI GCATC 2 cut(s) 417, 449
MaeI CTAG 4 cut(s) 144, 200, 479, 498
MaeII ACGT 1 cut(s) 261
MaeIII GTNAC 2 cut(s) 68, 622
MalI GATC 2 cut(s) 170, 398
MboI GATC 2 cut(s) 168, 396
MboII GAAGA 2 cut(s) 178, 424
MflI RGATCY 1 cut(s) 168
MhlI GDGCHC 1 cut(s) 421
MluCI AATT 1 cut(s) 326
MlyI GAGTC 1 cut(s) 300
MmeI TCCRAC 1 cut(s) 178
MnlI CCTC 9 cut(s) 82, 107, 198, 222, 241, 296, 384, 537, 568
Mph1103I ATGCAT 1 cut(s) 442
MroI TCCGGA 1 cut(s) 346
MroXI GAANNNNTTC 2 cut(s) 330, 537
MspI CCGG 1 cut(s) 347
MvnI CGCG 1 cut(s) 222
MwoI GCNNNNNNNGC 1 cut(s) 31
NcoI CCATGG 2 cut(s) 53, 255
NdeII GATC 2 cut(s) 168, 396
NlaIII CATG 5 cut(s) 29, 57, 259, 302, 344
NlaIV GGNNCC 1 cut(s) 606
NmeAIII GCCGAG 1 cut(s) 384
NmuCI GTSAC 2 cut(s) 68, 622
NsiI ATGCAT 1 cut(s) 442
NspI RCATGY 1 cut(s) 344
PagI TCATGA 1 cut(s) 298
PcsI WCGNNNNNNNCGW 1 cut(s) 267
PdmI GAANNNNTTC 2 cut(s) 330, 537
PfeI GAWTC 3 cut(s) 538, 614, 644
PleI GAGTC 1 cut(s) 300
PpsI GAGTC 1 cut(s) 300
PspN4I GGNNCC 1 cut(s) 606
PspPI GGNCC 2 cut(s) 461, 494
PsuI RGATCY 1 cut(s) 168
Sau3AI GATC 2 cut(s) 168, 396
Sau96I GGNCC 2 cut(s) 461, 494
SchI GAGTC 1 cut(s) 300
SduI GDGCHC 1 cut(s) 421
SfaNI GCATC 2 cut(s) 417, 449
SinI GGWCC 2 cut(s) 461, 494
SmlI CTYRAG 1 cut(s) 86
SmoI CTYRAG 1 cut(s) 86
Sse9I AATT 1 cut(s) 326
SsiI CCGC 1 cut(s) 220
SspMI CTAG 4 cut(s) 144, 200, 479, 498
StyI CCWWGG 3 cut(s) 53, 255, 457
TaaI ACNGT 2 cut(s) 523, 652
TaiI ACGT 1 cut(s) 264
TaqI TCGA 2 cut(s) 309, 573
TaqII GACCGA 1 cut(s) 56
TasI AATT 1 cut(s) 326
TfiI GAWTC 3 cut(s) 538, 614, 644
TscAI CASTG 2 cut(s) 383, 526
TseFI GTSAC 2 cut(s) 68, 622
Tsp45I GTSAC 2 cut(s) 68, 622
TspDTI ATGAA 2 cut(s) 17, 121
TspGWI ACGGA 1 cut(s) 537
TspRI CASTG 2 cut(s) 383, 526
VpaK11BI GGWCC 2 cut(s) 461, 494
XapI RAATTY 1 cut(s) 326
XceI RCATGY 1 cut(s) 344
XcmI CCANNNNNNNNNTGG 1 cut(s) 586
XmnI GAANNNNTTC 2 cut(s) 330, 537
XspI CTAG 4 cut(s) 144, 200, 479, 498
ZraI GACGTC 1 cut(s) 262
Zsp2I ATGCAT 1 cut(s) 442
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.