Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003314.1

Orthogroup ID

OG0013663

Physical Location & Seq

Genomic Coordinates Reverse (-)

40468 .. 42116

Gene Structure 1649 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003314.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1017 bp

atgtttgataatacgggccacaatgggtctccagtaccagttggattggatagtcgcaagggtgatgctaggcacctagtccttgaacttccaaagagttttcgtcaagcacagaaaaagcgatctaaaacattggccaataggggccaagatgtaactaacaaatcaaaagctttggattggaatgcagtatcatttggatgtgacagtcccaaggatgatgctaggcacgtagtccttgaggcatcaaagagctttcttcaagcacatgaaaagcattctaaaaaattggacaatatgggccaagatctaacagagaagttaaaggtcaagttaaagttaaaaaagggattgcatgggcgtccagtaccagttagagatgatgctctcaagggtgatgctgggaatctagtcctagaggcatcaaagagtttggaacaaagtattggtggtttgattgatggaggtggaaatactgaagtagaccagcacactcagatggagactaagtcgatcaagccaagacttgtacggatatctgtcacggatggtgatgcaacagagtcctccagcgatgaagaggctgagcccttggccactagtcaccgagtcaagaagttcatcaatgagattatgatcgagtcctcctccacaaaaactgatagtggtgtttggaggagcaggacaacaaggatgtggcggaagaagacaggtggaaaatctggacttccagctacttgccgaacgttgaaggcacagacaacctggaagaagttccgcggtgtgaaggcacaggcaaccaagaacaagttcctaggagtgaggcagagaccttggggaaaatgggcagcagagattagagagcctcatagtggaagacggctctggttgggtacatttgatacggctgaggatgcagctatggtgtatgacaaagcagctgttctgctgcgtggacctgacactttcaccaacttcagtacacctcaggtggcaaatgaagatggcaatttgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0022622 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0048316 GO:0048364 GO:0048366 GO:0048367 GO:0048608 GO:0048731 GO:0048825 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

338

Amino Acids

37.35

Weight (kDa)

9.79

Isoelectric Point (pI)

38.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013663)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g03840 FvH4_5g03840 FvH4_5g03840 FvH4_5g03840 FvH4_5g03840 FvH4_5g03840 FvH4_5g03840
rosa_chinensis	RchiOBHm_Chr7g0195661
rosa_laevigata	RLG00000004099
rosa_multiflora	Rmu_sc0003314.1_g000014 Rmu_sc0042286.1_g000001
rosa_roxburghii	Rroxscaffold_3G00260240
rosa_rugosa	Rorug07G0025600
rosa_samantha	Rh7AG153100 Rh7BG154500 Rh7CG158400 Rh7DG154100
rosa_wichuraiana	Rw7G013090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	72
AccI	GTMKAC	1 cut(s)	483
AccII	CGCG	1 cut(s)	780
AciI	CCGC	3 cut(s)	700, 778, 780
AclI	AACGTT	1 cut(s)	746
AcoI	YGGCCR	2 cut(s)	135, 594
AcuI	CTGAAG	2 cut(s)	498, 961
AcyI	GRCGYC	1 cut(s)	361
AfaI	GTAC	5 cut(s)	36, 369, 531, 895, 982
AfiI	CCNNNNNNNGG	1 cut(s)	872
AgsI	TTSAA	3 cut(s)	86, 263, 751
AhlI	ACTAGT	1 cut(s)	599
AjnI	CCWGG	1 cut(s)	764
AjuI	GAANNNNNNNTTGG	4 cut(s)	429, 461, 794, 826
AluBI	AGCT	5 cut(s)	173, 255, 734, 920, 941
AluI	AGCT	5 cut(s)	173, 255, 734, 920, 941
Alw26I	GTCTC	3 cut(s)	33, 497, 823
AoxI	GGCC	5 cut(s)	16, 135, 145, 301, 594
ApeKI	GCWGC	4 cut(s)	848, 917, 938, 949
Asp700I	GAANNNNTTC	2 cut(s)	773, 809
AspA2I	CCTAGG	1 cut(s)	814
AspS9I	GGNCC	4 cut(s)	16, 145, 301, 956
AsuHPI	GGTGA	5 cut(s)	74, 407, 563, 596, 961
AvaII	GGWCC	1 cut(s)	956
AvrII	CCTAGG	1 cut(s)	814
AxyI	CCTNAGG	1 cut(s)	987
BalI	TGGCCA	2 cut(s)	137, 596
BanI	GGYRCC	1 cut(s)	72
BanII	GRGCYC	1 cut(s)	591
BbsI	GAAGAC	2 cut(s)	713, 883
BbvCI	CCTCAGC	1 cut(s)	909
BbvI	GCAGC	4 cut(s)	860, 929, 936, 950
BccI	CCATC	4 cut(s)	455, 493, 542, 998
BceAI	ACGGC	2 cut(s)	896, 921
BciT130I	CCWGG	1 cut(s)	766
BcoDI	GTCTC	3 cut(s)	33, 497, 823
BcuI	ACTAGT	1 cut(s)	599
BfaI	CTAG	7 cut(s)	69, 77, 225, 410, 416, 600, 815
BglII	AGATCT	1 cut(s)	307
BisI	GCNGC	4 cut(s)	849, 918, 939, 950
BlnI	CCTAGG	1 cut(s)	814
BlpI	GCTNAGC	1 cut(s)	585
BlsI	GCNGC	4 cut(s)	850, 919, 940, 951
Bme1390I	CCNGG	1 cut(s)	766
Bme18I	GGWCC	1 cut(s)	956
BmgT120I	GGNCC	4 cut(s)	16, 145, 301, 956
BmiI	GGNNCC	2 cut(s)	74, 146
BmrFI	CCNGG	1 cut(s)	766
BmsI	GCATC	8 cut(s)	55, 211, 254, 373, 388, 431, 544, 904
BpiI	GAAGAC	2 cut(s)	713, 883
BplI	GAGNNNNNCTC	2 cut(s)	632, 664
BpmI	CTGGAG	2 cut(s)	15, 553
Bpu10I	CCTNAGC	1 cut(s)	909
Bpu1102I	GCTNAGC	1 cut(s)	585
BpuEI	CTTGAG	2 cut(s)	260, 374
BsaAI	YACGTR	1 cut(s)	232
BsaBI	GATNNNNATC	1 cut(s)	635
BsaHI	GRCGYC	1 cut(s)	361
BsaI	GGTCTC	2 cut(s)	33, 823
BsaJI	CCNNGG	5 cut(s)	213, 591, 778, 814, 833
BsaXI	ACNNNNNCTCC	2 cut(s)	494, 524
Bsc4I	CCNNNNNNNGG	1 cut(s)	872
Bse1I	ACTGG	4 cut(s)	32, 38, 365, 371
Bse21I	CCTNAGG	1 cut(s)	987
Bse8I	GATNNNNATC	1 cut(s)	635
BseBI	CCWGG	1 cut(s)	766
BseDI	CCNNGG	5 cut(s)	213, 591, 778, 814, 833
BseGI	GGATG	5 cut(s)	206, 223, 553, 699, 919
BseJI	GATNNNNATC	1 cut(s)	635
BseLI	CCNNNNNNNGG	1 cut(s)	872
BseMII	CTCAG	4 cut(s)	509, 576, 900, 1001
BseNI	ACTGG	4 cut(s)	32, 38, 365, 371
BseRI	GAGGAG	2 cut(s)	637, 691
BseXI	GCAGC	4 cut(s)	860, 929, 936, 950
BseYI	CCCAGC	1 cut(s)	401
Bsh1236I	CGCG	1 cut(s)	780
BshFI	GGCC	5 cut(s)	18, 137, 147, 303, 596
BshNI	GGYRCC	1 cut(s)	72
BslFI	GGGAC	1 cut(s)	195
BslI	CCNNNNNNNGG	1 cut(s)	872
BsmAI	GTCTC	3 cut(s)	33, 497, 823
BsmFI	GGGAC	1 cut(s)	195
BsmI	GAATGC	2 cut(s)	190, 277
BsnI	GGCC	5 cut(s)	18, 137, 147, 303, 596
Bso31I	GGTCTC	2 cut(s)	33, 823
Bsp1286I	GDGCHC	1 cut(s)	591
Bsp143I	GATC	4 cut(s)	122, 307, 513, 636
Bsp1720I	GCTNAGC	1 cut(s)	585
BspACI	CCGC	3 cut(s)	700, 778, 780
BspANI	GGCC	5 cut(s)	18, 137, 147, 303, 596
BspCNI	CTCAG	4 cut(s)	508, 577, 901, 1000
BspFNI	CGCG	1 cut(s)	780
BspLI	GGNNCC	2 cut(s)	74, 146
BspT107I	GGYRCC	1 cut(s)	72
BspTNI	GGTCTC	2 cut(s)	33, 823
BsrI	ACTGG	4 cut(s)	32, 38, 365, 371
BssECI	CCNNGG	5 cut(s)	213, 591, 778, 814, 833
BssMI	GATC	4 cut(s)	122, 307, 513, 636
BssNI	GRCGYC	1 cut(s)	361
BssT1I	CCWWGG	4 cut(s)	213, 591, 814, 833
Bst2UI	CCWGG	1 cut(s)	766
Bst4CI	ACNGT	1 cut(s)	209
Bst6I	CTCTTC	1 cut(s)	573
BstACI	GRCGYC	1 cut(s)	361
BstBAI	YACGTR	1 cut(s)	232
BstDEI	CTNAG	5 cut(s)	495, 507, 585, 909, 987
BstDSI	CCRYGG	1 cut(s)	778
BstF5I	GGATG	5 cut(s)	206, 223, 553, 699, 919
BstFNI	CGCG	1 cut(s)	780
BstKTI	GATC	4 cut(s)	125, 310, 516, 639
BstMAI	GTCTC	3 cut(s)	33, 497, 823
BstMBI	GATC	4 cut(s)	122, 307, 513, 636
BstMWI	GCNNNNNNNGC	1 cut(s)	914
BstNI	CCWGG	1 cut(s)	766
BstSCI	CCNGG	1 cut(s)	764
BstUI	CGCG	1 cut(s)	780
BstV1I	GCAGC	4 cut(s)	860, 929, 936, 950
BstV2I	GAAGAC	2 cut(s)	713, 883
BstX2I	RGATCY	1 cut(s)	307
BstYI	RGATCY	1 cut(s)	307
Bsu36I	CCTNAGG	1 cut(s)	987
BsuRI	GGCC	5 cut(s)	18, 137, 147, 303, 596
BtgI	CCRYGG	1 cut(s)	778
BtgZI	GCGATG	1 cut(s)	588
BtsCI	GGATG	5 cut(s)	206, 223, 553, 699, 919
Cfr13I	GGNCC	4 cut(s)	16, 145, 301, 956
Cfr42I	CCGCGG	1 cut(s)	781
CseI	GACGC	1 cut(s)	350
Csp6I	GTAC	5 cut(s)	35, 368, 530, 894, 981
CviAII	CATG	2 cut(s)	269, 356
CviQI	GTAC	5 cut(s)	35, 368, 530, 894, 981
DdeI	CTNAG	5 cut(s)	495, 507, 585, 909, 987
DpnI	GATC	4 cut(s)	124, 309, 515, 638
DpnII	GATC	4 cut(s)	122, 307, 513, 636
EaeI	YGGCCR	2 cut(s)	135, 594
Eam1104I	CTCTTC	1 cut(s)	573
EarI	CTCTTC	1 cut(s)	573
EciI	GGCGGA	1 cut(s)	715
Eco130I	CCWWGG	4 cut(s)	213, 591, 814, 833
Eco24I	GRGCYC	1 cut(s)	591
Eco31I	GGTCTC	2 cut(s)	33, 823
Eco32I	GATATC	1 cut(s)	537
Eco47I	GGWCC	1 cut(s)	956
Eco57I	CTGAAG	2 cut(s)	498, 961
Eco81I	CCTNAGG	1 cut(s)	987
EcoRII	CCWGG	1 cut(s)	764
EcoRV	GATATC	1 cut(s)	537
EcoT14I	CCWWGG	4 cut(s)	213, 591, 814, 833
EcoT38I	GRGCYC	1 cut(s)	591
ErhI	CCWWGG	4 cut(s)	213, 591, 814, 833
FaeI	CATG	2 cut(s)	272, 359
FaiI	YATR	7 cut(s)	270, 299, 357, 635, 870, 923, 930
FaqI	GGGAC	1 cut(s)	195
FatI	CATG	2 cut(s)	268, 355
FblI	GTMKAC	1 cut(s)	483
Fnu4HI	GCNGC	4 cut(s)	849, 918, 939, 950
FokI	GGATG	5 cut(s)	213, 230, 560, 706, 926
FriOI	GRGCYC	1 cut(s)	591
Fsp4HI	GCNGC	4 cut(s)	849, 918, 939, 950
FspBI	CTAG	7 cut(s)	69, 77, 225, 410, 416, 600, 815
GluI	GCNGC	4 cut(s)	849, 918, 939, 950
GsaI	CCCAGC	1 cut(s)	405
GsuI	CTGGAG	2 cut(s)	15, 553
HaeIII	GGCC	5 cut(s)	18, 137, 147, 303, 596
HgaI	GACGC	1 cut(s)	350
Hin1I	GRCGYC	1 cut(s)	361
Hin1II	CATG	2 cut(s)	272, 359
HindIII	AAGCTT	1 cut(s)	171
HinfI	GANTC	4 cut(s)	406, 563, 609, 641
HphI	GGTGA	5 cut(s)	74, 407, 563, 596, 961
Hpy166II	GTNNAC	3 cut(s)	484, 956, 983
Hpy188I	TCNGA	1 cut(s)	498
Hpy188III	TCNNGA	2 cut(s)	613, 723
Hpy8I	GTNNAC	3 cut(s)	484, 956, 983
HpyAV	CCTTC	2 cut(s)	745, 781
HpyCH4III	ACNGT	1 cut(s)	209
HpyCH4IV	ACGT	2 cut(s)	231, 746
HpyCH4V	TGCA	4 cut(s)	188, 355, 557, 917
HpyF10VI	GCNNNNNNNGC	1 cut(s)	914
HpyF3I	CTNAG	5 cut(s)	495, 507, 585, 909, 987
HpySE526I	ACGT	2 cut(s)	231, 746
Hsp92I	GRCGYC	1 cut(s)	361
Hsp92II	CATG	2 cut(s)	272, 359
KspI	CCGCGG	1 cut(s)	781
Kzo9I	GATC	4 cut(s)	122, 307, 513, 636
LmnI	GCTCC	1 cut(s)	678
Lsp1109I	GCAGC	4 cut(s)	860, 929, 936, 950
LweI	GCATC	8 cut(s)	55, 211, 254, 373, 388, 431, 544, 904
MaeI	CTAG	7 cut(s)	69, 77, 225, 410, 416, 600, 815
MaeII	ACGT	2 cut(s)	231, 746
MaeIII	GTNAC	4 cut(s)	154, 203, 541, 602
MalI	GATC	4 cut(s)	124, 309, 515, 638
MboI	GATC	4 cut(s)	122, 307, 513, 636
MboII	GAAGA	7 cut(s)	251, 590, 715, 718, 781, 888, 1013
MflI	RGATCY	1 cut(s)	307
MhlI	GDGCHC	1 cut(s)	591
MlsI	TGGCCA	2 cut(s)	137, 596
MluCI	AATT	2 cut(s)	287, 1009
MluNI	TGGCCA	2 cut(s)	137, 596
MlyI	GAGTC	3 cut(s)	572, 618, 650
MmeI	TCCRAC	1 cut(s)	22
Mox20I	TGGCCA	2 cut(s)	137, 596
MroXI	GAANNNNTTC	2 cut(s)	773, 809
MscI	TGGCCA	2 cut(s)	137, 596
MseI	TTAA	3 cut(s)	323, 335, 341
MslI	CAYNNNNRTG	2 cut(s)	199, 497
Msp20I	TGGCCA	2 cut(s)	137, 596
MspA1I	CMGCKG	2 cut(s)	780, 941
MspR9I	CCNGG	1 cut(s)	766
Mva1269I	GAATGC	2 cut(s)	190, 277
MvaI	CCWGG	1 cut(s)	766
MvnI	CGCG	1 cut(s)	780
MwoI	GCNNNNNNNGC	1 cut(s)	914
NdeII	GATC	4 cut(s)	122, 307, 513, 636
NlaIII	CATG	2 cut(s)	272, 359
NlaIV	GGNNCC	2 cut(s)	74, 146
NmuCI	GTSAC	3 cut(s)	203, 541, 602
PctI	GAATGC	2 cut(s)	190, 277
PdmI	GAANNNNTTC	2 cut(s)	773, 809
PfeI	GAWTC	1 cut(s)	406
PflFI	GACNNNGTC	1 cut(s)	508
PkrI	GCNGC	4 cut(s)	850, 919, 940, 951
PleI	GAGTC	3 cut(s)	571, 617, 649
PpsI	GAGTC	3 cut(s)	571, 617, 649
Ppu21I	YACGTR	1 cut(s)	232
Psp1406I	AACGTT	1 cut(s)	746
Psp6I	CCWGG	1 cut(s)	764
PspFI	CCCAGC	1 cut(s)	401
PspGI	CCWGG	1 cut(s)	764
PspN4I	GGNNCC	2 cut(s)	74, 146
PspPI	GGNCC	4 cut(s)	16, 145, 301, 956
PsuI	RGATCY	1 cut(s)	307
PsyI	GACNNNGTC	1 cut(s)	508
PvuII	CAGCTG	1 cut(s)	941
RsaI	GTAC	5 cut(s)	36, 369, 531, 895, 982
RsaNI	GTAC	5 cut(s)	35, 368, 530, 894, 981
RseI	CAYNNNNRTG	2 cut(s)	199, 497
SacII	CCGCGG	1 cut(s)	781
SaqAI	TTAA	3 cut(s)	323, 335, 341
SatI	GCNGC	4 cut(s)	849, 918, 939, 950
Sau3AI	GATC	4 cut(s)	122, 307, 513, 636
Sau96I	GGNCC	4 cut(s)	16, 145, 301, 956
SchI	GAGTC	3 cut(s)	572, 618, 650
ScrFI	CCNGG	1 cut(s)	766
SduI	GDGCHC	1 cut(s)	591
SfaNI	GCATC	8 cut(s)	55, 211, 254, 373, 388, 431, 544, 904
Sfr303I	CCGCGG	1 cut(s)	781
SgrBI	CCGCGG	1 cut(s)	781
SinI	GGWCC	1 cut(s)	956
SmiMI	CAYNNNNRTG	2 cut(s)	199, 497
SmlI	CTYRAG	2 cut(s)	239, 389
SmoI	CTYRAG	2 cut(s)	239, 389
SpeI	ACTAGT	1 cut(s)	599
Sse9I	AATT	2 cut(s)	287, 1009
SsiI	CCGC	3 cut(s)	700, 778, 780
SspMI	CTAG	7 cut(s)	69, 77, 225, 410, 416, 600, 815
StyD4I	CCNGG	1 cut(s)	764
StyI	CCWWGG	4 cut(s)	213, 591, 814, 833
TaaI	ACNGT	1 cut(s)	209
TaiI	ACGT	2 cut(s)	234, 749
TaqI	TCGA	2 cut(s)	512, 639
TasI	AATT	2 cut(s)	287, 1009
TatI	WGTACW	1 cut(s)	980
TfiI	GAWTC	1 cut(s)	406
Tru1I	TTAA	3 cut(s)	323, 335, 341
Tru9I	TTAA	3 cut(s)	323, 335, 341
TseFI	GTSAC	3 cut(s)	203, 541, 602
TseI	GCWGC	4 cut(s)	848, 917, 938, 949
Tsp45I	GTSAC	3 cut(s)	203, 541, 602
TspDTI	ATGAA	4 cut(s)	285, 591, 610, 1014
TspGWI	ACGGA	2 cut(s)	547, 560
Tth111I	GACNNNGTC	1 cut(s)	508
VpaK11BI	GGWCC	1 cut(s)	956
XmaJI	CCTAGG	1 cut(s)	814
XmiI	GTMKAC	1 cut(s)	483
XmnI	GAANNNNTTC	2 cut(s)	773, 809
XspI	CTAG	7 cut(s)	69, 77, 225, 410, 416, 600, 815

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.