Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0002108

Physical Location & Seq

Genomic Coordinates Reverse (-)

1817069 .. 1822556

Gene Structure 5488 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0025600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

ATGCCGAAAAGCCGCAAAAGAAAGCAGCAGGTGGAGGTTGACCACCACCCAAAACCTCCAACCAAAACACCCAAAACCACCAAAGAGACCCCAAAGGACCCATACCCGAATCACGCCCGACCCACCCGAGAAGAATGCGTGTCCGTCCGAGACGACCTCTTGGCCCTCCACGGCTTCCCCCAAGAGTTCGCCAAGTACCGAGAACAGCGACTGAGTTCTCAAACATCCAACGGCTGCGACGCTGCCGTCAGTTCAGAGCCGTCGGATGAAAAAGAGAGTGTCTTGGATGGGTTAGTGAGAACTTTATTGTCTCAGAATACCACGGAAGCTAATTCCCAGAAAGCCTTTGCTTCTCTCAAGTCAGCTTTTCCAACTTGGGAAGAGGTTTTGGCTGCTGATTCACAAAGCTTAGAGAGTGCCATAAGATGTGGAGGTTTAGCTAAGACCAAAGCTTCTTGTATTAAGAACATGCTGAGTTGTTTGTTGGAGAAGAAGGAAAAGCTTTGCTTGGAGTACCTGCGAGATTTGTCAGTTGATGAAATTAAGTCTGAGCTCTCTCATTTTAAAGGAATCGGTCCAAAAACGGTGGCTTGTGTTTTAATGTTCCAACTTCAGCAAGATGATTTTCCTGTGGACACCCATGTGTTTGAGATTGCAAAGGCTATGGCTTGGGTTCCAGTTGGAGCAGACAGGAATAAGACATATCTTCATCTTAACCAATGGATACCAGATGAACTTAAATTTGATCTGAACTGCCTTCTGTATACACATGGTAAGCTCTGCCGCAAATGCATCAAGAAAGGAGGTAGCACTGGTAAGCAGCAAGAAAAGGAATCCGAGGATATCAATTCCTGTCCTTTGTTACGTTACTGTAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0006029 GO:0006464 GO:0006486 GO:0006493 GO:0006807 GO:0008150 GO:0008152 GO:0008378 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0010384 GO:0010404 GO:0010405 GO:0012505 GO:0016740 GO:0016757 GO:0016758 GO:0018193 GO:0018208 GO:0018258 GO:0019538 GO:0031410 GO:0031982 GO:0031984 GO:0034645 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044036 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0070085 GO:0071554 GO:0071704 GO:0097708 GO:0098791 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1990714

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4094 Galactosyl_T

Protein Analysis

292

Amino Acids

32.89

Weight (kDa)

8.36

Isoelectric Point (pI)

43.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HhH-GPD	PF00730	99 - 243	2e-12	HhH-GPD superfamily base excision DNA repair protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002108)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G53340 AT5G53340
fragaria_vesca	FvH4_5g03830 FvH4_5g03830 FvH4_5g03830 FvH4_5g03830 FvH4_5g03830 FvH4_5g03830 FvH4_5g03830 FvH4_7g30880 FvH4_7g30880 FvH4_7g30880 FvH4_7g30880 FvH4_7g30880
malus_domestica	MD01G1213800.v1.1 MD06G1099700.v1.1 MD07G1283500.v1.1 MD14G1119400.v1.1
prunus_persica	Prupe.2G305900_v2.0.a1 Prupe.5G113400_v2.0.a1 Prupe.5G113400_v2.0.a1
pyrus_communis	pycom01g22450 pycom06g09500 pycom07g25760
rosa_chinensis	RchiOBHm_Chr1g0379951 RchiOBHm_Chr7g0195671
rosa_laevigata	RLG00000026346
rosa_multiflora	Rmu_sc0003314.1_g000015 Rmu_sc0004184.1_g000018 Rmu_sc0016754.1_g000001 Rmu_sc0035510.1_g000001
rosa_roxburghii	Rroxscaffold_3G00260230 Rroxscaffold_4G00279830
rosa_rugosa	Rorug01G0415900 Rorug07G0025600
rosa_samantha	Rh1AG440400 Rh1BG396200 Rh1DG427000 Rh7AG153400 Rh7BG154600 Rh7CG158600 Rh7CG158700
rosa_wichuraiana	Rw1G038290 Rw7G013100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	19
AasI	GACNNNNNNGTC	1 cut(s)	245
Acc36I	ACCTGC	2 cut(s)	19, 525
AccI	GTMKAC	1 cut(s)	764
AciI	CCGC	2 cut(s)	13, 784
AcsI	RAATTY	1 cut(s)	740
AcuI	CTGAAG	1 cut(s)	596
AfaI	GTAC	2 cut(s)	197, 515
AleI	CACNNNNGTG	1 cut(s)	641
AluBI	AGCT	8 cut(s)	329, 365, 408, 440, 452, 502, 553, 778
AluI	AGCT	8 cut(s)	329, 365, 408, 440, 452, 502, 553, 778
Alw21I	GWGCWC	1 cut(s)	555
Alw26I	GTCTC	3 cut(s)	80, 144, 315
AlwNI	CAGNNNCTG	1 cut(s)	211
Ama87I	CYCGRG	1 cut(s)	126
AoxI	GGCC	1 cut(s)	162
ApeKI	GCWGC	5 cut(s)	25, 234, 242, 392, 820
ApoI	RAATTY	1 cut(s)	740
AspS9I	GGNCC	3 cut(s)	97, 163, 575
AvaI	CYCGRG	1 cut(s)	126
AvaII	GGWCC	2 cut(s)	97, 575
BanII	GRGCYC	1 cut(s)	555
Bbv12I	GWGCWC	1 cut(s)	555
BbvI	GCAGC	5 cut(s)	37, 221, 229, 379, 832
BccI	CCATC	1 cut(s)	281
BceAI	ACGGC	4 cut(s)	187, 230, 244, 247
BcgI	CGANNNNNNTGC	2 cut(s)	117, 151
BciVI	GTATCC	1 cut(s)	717
BcoDI	GTCTC	3 cut(s)	80, 144, 315
BfuAI	ACCTGC	2 cut(s)	19, 525
BfuI	GTATCC	1 cut(s)	717
BisI	GCNGC	7 cut(s)	13, 26, 235, 243, 393, 784, 821
BlsI	GCNGC	7 cut(s)	14, 27, 236, 244, 394, 785, 822
Bme18I	GGWCC	2 cut(s)	97, 575
BmeT110I	CYCGRG	1 cut(s)	126
BmgT120I	GGNCC	3 cut(s)	97, 163, 575
BmiI	GGNNCC	2 cut(s)	99, 675
BmsI	GCATC	1 cut(s)	801
BplI	GAGNNNNNCTC	2 cut(s)	141, 173
BpuEI	CTTGAG	1 cut(s)	341
BsaI	GGTCTC	1 cut(s)	80
BsaJI	CCNNGG	3 cut(s)	169, 321, 837
Bse1I	ACTGG	2 cut(s)	677, 817
BseDI	CCNNGG	3 cut(s)	169, 321, 837
BseGI	GGATG	3 cut(s)	224, 271, 292
BseMII	CTCAG	4 cut(s)	203, 326, 464, 540
BseNI	ACTGG	2 cut(s)	677, 817
BseXI	GCAGC	5 cut(s)	37, 221, 229, 379, 832
BshFI	GGCC	1 cut(s)	164
BsiHKAI	GWGCWC	1 cut(s)	555
BsiHKCI	CYCGRG	1 cut(s)	126
BsmAI	GTCTC	3 cut(s)	80, 144, 315
BsmBI	CGTCTC	1 cut(s)	144
BsmI	GAATGC	1 cut(s)	140
BsnI	GGCC	1 cut(s)	164
Bso31I	GGTCTC	1 cut(s)	80
BsoBI	CYCGRG	1 cut(s)	126
Bsp1286I	GDGCHC	1 cut(s)	555
Bsp143I	GATC	1 cut(s)	745
BspACI	CCGC	2 cut(s)	13, 784
BspANI	GGCC	1 cut(s)	164
BspCNI	CTCAG	4 cut(s)	204, 325, 465, 541
BspLI	GGNNCC	2 cut(s)	99, 675
BspMI	ACCTGC	2 cut(s)	19, 525
BspTNI	GGTCTC	1 cut(s)	80
BsrI	ACTGG	2 cut(s)	677, 817
BssECI	CCNNGG	3 cut(s)	169, 321, 837
BssMI	GATC	1 cut(s)	745
BssNAI	GTATAC	1 cut(s)	765
Bst1107I	GTATAC	1 cut(s)	765
Bst4CI	ACNGT	2 cut(s)	586, 872
Bst6I	CTCTTC	1 cut(s)	375
BstDEI	CTNAG	6 cut(s)	212, 312, 409, 441, 473, 549
BstDSI	CCRYGG	2 cut(s)	169, 321
BstF5I	GGATG	3 cut(s)	224, 271, 292
BstKTI	GATC	1 cut(s)	748
BstMAI	GTCTC	3 cut(s)	80, 144, 315
BstMBI	GATC	1 cut(s)	745
BstMWI	GCNNNNNNNGC	1 cut(s)	789
BstNSI	RCATGY	1 cut(s)	472
BstV1I	GCAGC	5 cut(s)	37, 221, 229, 379, 832
BstZ17I	GTATAC	1 cut(s)	765
BsuI	GTATCC	1 cut(s)	717
BsuRI	GGCC	1 cut(s)	164
BtgI	CCRYGG	2 cut(s)	169, 321
BtsCI	GGATG	3 cut(s)	224, 271, 292
BtsIMutI	CAGTG	1 cut(s)	810
BveI	ACCTGC	2 cut(s)	19, 525
CaiI	CAGNNNCTG	1 cut(s)	211
Cfr13I	GGNCC	3 cut(s)	97, 163, 575
CseI	GACGC	1 cut(s)	248
Csp6I	GTAC	2 cut(s)	196, 514
CspCI	CAANNNNNGTGG	2 cut(s)	567, 602
CviAII	CATG	3 cut(s)	469, 641, 770
CviQI	GTAC	2 cut(s)	196, 514
DdeI	CTNAG	6 cut(s)	212, 312, 409, 441, 473, 549
DpnI	GATC	1 cut(s)	747
DpnII	GATC	1 cut(s)	745
DraI	TTTAAA	1 cut(s)	565
DrdI	GACNNNNNNGTC	1 cut(s)	245
DseDI	GACNNNNNNGTC	1 cut(s)	245
Eam1104I	CTCTTC	1 cut(s)	375
EarI	CTCTTC	1 cut(s)	375
Ecl136II	GAGCTC	1 cut(s)	553
Eco24I	GRGCYC	1 cut(s)	555
Eco31I	GGTCTC	1 cut(s)	80
Eco32I	GATATC	1 cut(s)	844
Eco47I	GGWCC	2 cut(s)	97, 575
Eco53kI	GAGCTC	1 cut(s)	553
Eco57I	CTGAAG	1 cut(s)	596
Eco88I	CYCGRG	1 cut(s)	126
EcoICRI	GAGCTC	1 cut(s)	553
EcoO109I	RGGNCCY	1 cut(s)	97
EcoRV	GATATC	1 cut(s)	844
EcoT22I	ATGCAT	1 cut(s)	794
EcoT38I	GRGCYC	1 cut(s)	555
Esp3I	CGTCTC	1 cut(s)	144
FaeI	CATG	3 cut(s)	472, 644, 773
FaiI	YATR	8 cut(s)	103, 422, 470, 642, 665, 703, 765, 771
FalI	AAGNNNNNCTT	2 cut(s)	491, 523
FatI	CATG	3 cut(s)	468, 640, 769
FblI	GTMKAC	1 cut(s)	764
Fnu4HI	GCNGC	7 cut(s)	13, 26, 235, 243, 393, 784, 821
FokI	GGATG	3 cut(s)	211, 278, 299
FriOI	GRGCYC	1 cut(s)	555
Fsp4HI	GCNGC	7 cut(s)	13, 26, 235, 243, 393, 784, 821
GluI	GCNGC	7 cut(s)	13, 26, 235, 243, 393, 784, 821
HaeIII	GGCC	1 cut(s)	164
HgaI	GACGC	1 cut(s)	248
Hin1II	CATG	3 cut(s)	472, 644, 773
HincII	GTYRAC	1 cut(s)	40
HindII	GTYRAC	1 cut(s)	40
HindIII	AAGCTT	3 cut(s)	406, 450, 500
HinfI	GANTC	4 cut(s)	109, 398, 570, 833
Hpy166II	GTNNAC	3 cut(s)	40, 634, 765
Hpy188I	TCNGA	7 cut(s)	149, 256, 265, 315, 550, 750, 838
Hpy188III	TCNNGA	1 cut(s)	796
Hpy8I	GTNNAC	3 cut(s)	40, 634, 765
Hpy99I	CGWCG	2 cut(s)	242, 265
HpyAV	CCTTC	2 cut(s)	487, 767
HpyCH4III	ACNGT	2 cut(s)	586, 872
HpyCH4IV	ACGT	1 cut(s)	865
HpyCH4V	TGCA	2 cut(s)	656, 792
HpyF10VI	GCNNNNNNNGC	1 cut(s)	789
HpyF3I	CTNAG	6 cut(s)	212, 312, 409, 441, 473, 549
HpySE526I	ACGT	1 cut(s)	865
Hsp92II	CATG	3 cut(s)	472, 644, 773
Kzo9I	GATC	1 cut(s)	745
LmnI	GCTCC	1 cut(s)	683
LpnPI	CCDG	9 cut(s)	14, 350, 530, 642, 676, 690, 741, 798, 865
Lsp1109I	GCAGC	5 cut(s)	37, 221, 229, 379, 832
LweI	GCATC	1 cut(s)	801
MaeII	ACGT	1 cut(s)	865
MaeIII	GTNAC	2 cut(s)	861, 866
MalI	GATC	1 cut(s)	747
MboI	GATC	1 cut(s)	745
MboII	GAAGA	4 cut(s)	143, 392, 502, 698
MhlI	GDGCHC	1 cut(s)	555
MluCI	AATT	4 cut(s)	331, 540, 740, 847
MmeI	TCCRAC	7 cut(s)	83, 243, 252, 395, 465, 631, 661
MnlI	CCTC	8 cut(s)	28, 66, 167, 176, 376, 425, 797, 832
Mph1103I	ATGCAT	1 cut(s)	794
MseI	TTAA	6 cut(s)	462, 543, 564, 599, 714, 738
MslI	CAYNNNNRTG	1 cut(s)	641
Mva1269I	GAATGC	1 cut(s)	140
MwoI	GCNNNNNNNGC	1 cut(s)	789
NdeII	GATC	1 cut(s)	745
NlaIII	CATG	3 cut(s)	472, 644, 773
NlaIV	GGNNCC	2 cut(s)	99, 675
NsiI	ATGCAT	1 cut(s)	794
NspI	RCATGY	1 cut(s)	472
OliI	CACNNNNGTG	1 cut(s)	641
PaqCI	CACCTGC	1 cut(s)	19
PctI	GAATGC	1 cut(s)	140
PfeI	GAWTC	4 cut(s)	109, 398, 570, 833
PkrI	GCNGC	7 cut(s)	14, 27, 236, 244, 394, 785, 822
PpuMI	RGGWCCY	1 cut(s)	97
Psp124BI	GAGCTC	1 cut(s)	555
Psp5II	RGGWCCY	1 cut(s)	97
PspN4I	GGNNCC	2 cut(s)	99, 675
PspPI	GGNCC	3 cut(s)	97, 163, 575
PspPPI	RGGWCCY	1 cut(s)	97
PstNI	CAGNNNCTG	1 cut(s)	211
RsaI	GTAC	2 cut(s)	197, 515
RsaNI	GTAC	2 cut(s)	196, 514
RseI	CAYNNNNRTG	1 cut(s)	641
SacI	GAGCTC	1 cut(s)	555
SaqAI	TTAA	6 cut(s)	462, 543, 564, 599, 714, 738
SatI	GCNGC	7 cut(s)	13, 26, 235, 243, 393, 784, 821
Sau3AI	GATC	1 cut(s)	745
Sau96I	GGNCC	3 cut(s)	97, 163, 575
SduI	GDGCHC	1 cut(s)	555
SfaNI	GCATC	1 cut(s)	801
SinI	GGWCC	2 cut(s)	97, 575
SmiMI	CAYNNNNRTG	1 cut(s)	641
SmlI	CTYRAG	1 cut(s)	356
SmoI	CTYRAG	1 cut(s)	356
Sse9I	AATT	4 cut(s)	331, 540, 740, 847
SsiI	CCGC	2 cut(s)	13, 784
SstI	GAGCTC	1 cut(s)	555
TaaI	ACNGT	2 cut(s)	586, 872
TaiI	ACGT	1 cut(s)	868
TaqII	GACCGA	1 cut(s)	563
TasI	AATT	4 cut(s)	331, 540, 740, 847
TauI	GCSGC	2 cut(s)	15, 786
TfiI	GAWTC	4 cut(s)	109, 398, 570, 833
Tru1I	TTAA	6 cut(s)	462, 543, 564, 599, 714, 738
Tru9I	TTAA	6 cut(s)	462, 543, 564, 599, 714, 738
TscAI	CASTG	1 cut(s)	817
TseI	GCWGC	5 cut(s)	25, 234, 242, 392, 820
TspDTI	ATGAA	4 cut(s)	282, 552, 698, 747
TspGWI	ACGGA	2 cut(s)	133, 338
TspRI	CASTG	1 cut(s)	817
VpaK11BI	GGWCC	2 cut(s)	97, 575
XapI	RAATTY	1 cut(s)	740
XceI	RCATGY	1 cut(s)	472
XmiI	GTMKAC	1 cut(s)	764
Zsp2I	ATGCAT	1 cut(s)	794

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.