Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0002108

Physical Location & Seq

Genomic Coordinates Forward (+)

25967942 .. 25970580

Gene Structure 2639 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g25760.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

ATGGGAGAGAAGATGCAAAGCAGGGGATCCAGTGCTCGTCTCTCCGGCGCCGTTTTCCGGTCTCGGATCCCGACGCTCATGGTCTCCATGTTCGCCACCTTCGCCTCCATCTACGTCGCCGGCCGGCTGTGGCAGGATTCGGAGAGCAGGGTTTATTTGATCAAGGAACTTGATAGGATTACTGGGCAGGGGCGATCTGTCGTATCAGTGGATGATACGTTGAAAATCATAGCCTGCAGGGAACAACATAAGAAGTTATCAGCTCTTGAGATGGAGTTGACTGCAGCTAGACAAGAAGGTTTTACTTCGGGGCGATTAGCAGAGATTAACGGAACTGATTACAAGATAAGACCACTAGTGGTGATTGGTATTTTTACAACCTTTGGCTGCAAAAATAATAGGGATGCAATTCGTCAGGCGTGGATGGGAACAGGTGGTATCTTGAAAAAAATGGAGAATGAGAAGGGAATAATCACTCGATTTGTTATTGGAAGAAGTGCAAATCGTGGGGATAGTTTGGACCGAGCCATTGACAATGAAAACCGGCAAACTAAGGACTTCATTATTCTTGATACCCATGTAGAGTCATCTGAAGAGTTCCCAAAGAAAAGTAAATTGTTCTTTGCTCATGCTGCTGAAAAATGGAATGCTGAGTTTTACTCCAAAGTCAACGACGATGTTTATGTAAATATTGATGCTTTGGGAGCTACACTTGCAACTCATTTGGACAAACCTCGGGTTTATATGGGGTGCATGAAATCAGGCGAAGTTTTCTCTGAGCCGAGCCAAAAATGGTATGAACCAGAATGGTGGAAGTTTGGCGATAAAAAATCATATTTCCGCCATGCTTCGGCTGAGATGTTCGTCATATCTCAAGCTTTGGCGAAATTTGTTTCAATCAATAGAGATATACTCCGTACCTATGCCCACGATGATATCAGTGTCCGATCTTGGTTTATTGGTCTTGATGTTAAACATGTCCATGATACCAAGTTTTGTTGCTCCTCGCGGGCGGGAGGAGCTATTTGTGCTGGTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0006029 GO:0006464 GO:0006486 GO:0006493 GO:0006807 GO:0008150 GO:0008152 GO:0008378 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0010384 GO:0010404 GO:0010405 GO:0012505 GO:0016740 GO:0016757 GO:0016758 GO:0018193 GO:0018208 GO:0018258 GO:0019538 GO:0031410 GO:0031982 GO:0031984 GO:0034645 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044036 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0070085 GO:0071554 GO:0071704 GO:0097708 GO:0098791 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1990714

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4094 Galactosyl_T

Protein Analysis

347

Amino Acids

39.05

Weight (kDa)

9.09

Isoelectric Point (pI)

36.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002108)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G53340 AT5G53340
fragaria_vesca	FvH4_5g03830 FvH4_5g03830 FvH4_5g03830 FvH4_5g03830 FvH4_5g03830 FvH4_5g03830 FvH4_5g03830 FvH4_7g30880 FvH4_7g30880 FvH4_7g30880 FvH4_7g30880 FvH4_7g30880
malus_domestica	MD01G1213800.v1.1 MD06G1099700.v1.1 MD07G1283500.v1.1 MD14G1119400.v1.1
prunus_persica	Prupe.2G305900_v2.0.a1 Prupe.5G113400_v2.0.a1 Prupe.5G113400_v2.0.a1
pyrus_communis	pycom01g22450 pycom06g09500 pycom07g25760
rosa_chinensis	RchiOBHm_Chr1g0379951 RchiOBHm_Chr7g0195671
rosa_laevigata	RLG00000026346
rosa_multiflora	Rmu_sc0003314.1_g000015 Rmu_sc0004184.1_g000018 Rmu_sc0016754.1_g000001 Rmu_sc0035510.1_g000001
rosa_roxburghii	Rroxscaffold_3G00260230 Rroxscaffold_4G00279830
rosa_rugosa	Rorug01G0415900 Rorug07G0025600
rosa_samantha	Rh1AG440400 Rh1BG396200 Rh1DG427000 Rh7AG153400 Rh7BG154600 Rh7CG158600 Rh7CG158700
rosa_wichuraiana	Rw1G038290 Rw7G013100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	47
AccII	CGCG	1 cut(s)	1009
AciI	CCGC	3 cut(s)	841, 1009, 1013
AclWI	GGATC	4 cut(s)	21, 34, 61, 74
AcoI	YGGCCR	1 cut(s)	121
AcsI	RAATTY	1 cut(s)	887
AcuI	CTGAAG	1 cut(s)	612
AcyI	GRCGYC	1 cut(s)	48
AfaI	GTAC	1 cut(s)	919
AfiI	CCNNNNNNNGG	2 cut(s)	57, 850
AflIII	ACRYGT	1 cut(s)	976
AgsI	TTSAA	3 cut(s)	223, 445, 897
AhlI	ACTAGT	1 cut(s)	355
AluBI	AGCT	5 cut(s)	263, 287, 707, 878, 1022
AluI	AGCT	5 cut(s)	263, 287, 707, 878, 1022
Alw21I	GWGCWC	1 cut(s)	37
Alw26I	GTCTC	3 cut(s)	44, 66, 88
AlwI	GGATC	4 cut(s)	21, 34, 61, 74
Ama87I	CYCGRG	1 cut(s)	735
AoxI	GGCC	1 cut(s)	121
ApeKI	GCWGC	3 cut(s)	284, 387, 632
ApoI	RAATTY	1 cut(s)	887
AspLEI	GCGC	1 cut(s)	50
AspS9I	GGNCC	1 cut(s)	520
AsuHPI	GGTGA	1 cut(s)	373
AvaI	CYCGRG	1 cut(s)	735
AvaII	GGWCC	1 cut(s)	520
BaeI	ACNNNNGTAYC	2 cut(s)	564, 597
BamHI	GGATCC	2 cut(s)	26, 66
BanI	GGYRCC	1 cut(s)	47
Bbv12I	GWGCWC	1 cut(s)	37
BbvI	GCAGC	3 cut(s)	296, 374, 619
BccI	CCATC	3 cut(s)	116, 265, 418
BceAI	ACGGC	1 cut(s)	35
BclI	TGATCA	1 cut(s)	159
BcoDI	GTCTC	3 cut(s)	44, 66, 88
BcuI	ACTAGT	1 cut(s)	355
BfaI	CTAG	2 cut(s)	288, 356
BfmI	CTRYAG	2 cut(s)	235, 282
BfoI	RGCGCY	1 cut(s)	51
BisI	GCNGC	3 cut(s)	285, 388, 633
BlsI	GCNGC	3 cut(s)	286, 389, 634
Bme18I	GGWCC	1 cut(s)	520
BmeT110I	CYCGRG	1 cut(s)	735
BmgT120I	GGNCC	1 cut(s)	520
BmiI	GGNNCC	3 cut(s)	28, 49, 68
BmrI	ACTGGG	1 cut(s)	192
BmsI	GCATC	3 cut(s)	3, 394, 685
BmuI	ACTGGG	1 cut(s)	192
BplI	GAGNNNNNCTC	4 cut(s)	644, 676, 897, 929
BpuEI	CTTGAG	2 cut(s)	287, 858
BsaHI	GRCGYC	1 cut(s)	48
BsaI	GGTCTC	2 cut(s)	66, 88
BsaJI	CCNNGG	1 cut(s)	734
BsaWI	WCCGGW	1 cut(s)	57
Bsc4I	CCNNNNNNNGG	2 cut(s)	57, 850
Bse118I	RCCGGY	3 cut(s)	119, 123, 543
Bse1I	ACTGG	2 cut(s)	30, 187
BseDI	CCNNGG	1 cut(s)	734
BseGI	GGATG	3 cut(s)	217, 409, 429
BseLI	CCNNNNNNNGG	2 cut(s)	57, 850
BseMII	CTCAG	3 cut(s)	642, 768, 846
BseNI	ACTGG	2 cut(s)	30, 187
BseRI	GAGGAG	2 cut(s)	994, 1032
BseX3I	CGGCCG	1 cut(s)	121
BseXI	GCAGC	3 cut(s)	296, 374, 619
Bsh1236I	CGCG	1 cut(s)	1009
Bsh1285I	CGRYCG	1 cut(s)	124
BshFI	GGCC	1 cut(s)	123
BshNI	GGYRCC	1 cut(s)	47
BsiEI	CGRYCG	1 cut(s)	124
BsiHKAI	GWGCWC	1 cut(s)	37
BsiHKCI	CYCGRG	1 cut(s)	735
BsiSI	CCGG	5 cut(s)	45, 58, 120, 124, 544
BslI	CCNNNNNNNGG	2 cut(s)	57, 850
BsmAI	GTCTC	3 cut(s)	44, 66, 88
BsmBI	CGTCTC	1 cut(s)	44
BsmI	GAATGC	1 cut(s)	652
BsnI	GGCC	1 cut(s)	123
Bso31I	GGTCTC	2 cut(s)	66, 88
BsoBI	CYCGRG	1 cut(s)	735
Bsp1286I	GDGCHC	1 cut(s)	37
Bsp143I	GATC	5 cut(s)	26, 66, 159, 194, 947
BspACI	CCGC	3 cut(s)	841, 1009, 1013
BspANI	GGCC	1 cut(s)	123
BspCNI	CTCAG	3 cut(s)	643, 769, 847
BspFNI	CGCG	1 cut(s)	1009
BspLI	GGNNCC	3 cut(s)	28, 49, 68
BspMAI	CTGCAG	2 cut(s)	239, 286
BspPI	GGATC	4 cut(s)	21, 34, 61, 74
BspT107I	GGYRCC	1 cut(s)	47
BspTNI	GGTCTC	2 cut(s)	66, 88
BsrFI	RCCGGY	3 cut(s)	119, 123, 543
BsrI	ACTGG	2 cut(s)	30, 187
BssAI	RCCGGY	3 cut(s)	119, 123, 543
BssECI	CCNNGG	1 cut(s)	734
BssMI	GATC	5 cut(s)	26, 66, 159, 194, 947
BssNI	GRCGYC	1 cut(s)	48
Bst6I	CTCTTC	1 cut(s)	588
BstACI	GRCGYC	1 cut(s)	48
BstC8I	GCNNGC	4 cut(s)	121, 125, 235, 1011
BstDEI	CTNAG	4 cut(s)	552, 651, 777, 855
BstF5I	GGATG	3 cut(s)	217, 409, 429
BstFNI	CGCG	1 cut(s)	1009
BstH2I	RGCGCY	1 cut(s)	51
BstHHI	GCGC	1 cut(s)	50
BstKTI	GATC	5 cut(s)	29, 69, 162, 197, 950
BstMAI	GTCTC	3 cut(s)	44, 66, 88
BstMBI	GATC	5 cut(s)	26, 66, 159, 194, 947
BstMCI	CGRYCG	1 cut(s)	124
BstMWI	GCNNNNNNNGC	6 cut(s)	101, 632, 704, 713, 1019, 1028
BstNSI	RCATGY	1 cut(s)	980
BstSFI	CTRYAG	2 cut(s)	235, 282
BstUI	CGCG	1 cut(s)	1009
BstV1I	GCAGC	3 cut(s)	296, 374, 619
BstX2I	RGATCY	2 cut(s)	26, 66
BstXI	CCANNNNNNTGG	1 cut(s)	810
BstYI	RGATCY	2 cut(s)	26, 66
BstZI	CGGCCG	1 cut(s)	121
BsuRI	GGCC	1 cut(s)	123
BtsCI	GGATG	3 cut(s)	217, 409, 429
BtsIMutI	CAGTG	3 cut(s)	37, 213, 946
Cac8I	GCNNGC	4 cut(s)	121, 125, 235, 1011
CfoI	GCGC	1 cut(s)	50
Cfr10I	RCCGGY	3 cut(s)	119, 123, 543
Cfr13I	GGNCC	1 cut(s)	520
CseI	GACGC	1 cut(s)	82
Csp6I	GTAC	1 cut(s)	918
CviAII	CATG	8 cut(s)	79, 88, 578, 629, 754, 845, 977, 983
CviQI	GTAC	1 cut(s)	918
DdeI	CTNAG	4 cut(s)	552, 651, 777, 855
DinI	GGCGCC	1 cut(s)	49
DpnI	GATC	5 cut(s)	28, 68, 161, 196, 949
DpnII	GATC	5 cut(s)	26, 66, 159, 194, 947
EaeI	YGGCCR	1 cut(s)	121
EagI	CGGCCG	1 cut(s)	121
Eam1104I	CTCTTC	1 cut(s)	588
EarI	CTCTTC	1 cut(s)	588
EciI	GGCGGA	1 cut(s)	830
EclXI	CGGCCG	1 cut(s)	121
Eco31I	GGTCTC	2 cut(s)	66, 88
Eco32I	GATATC	1 cut(s)	937
Eco47I	GGWCC	1 cut(s)	520
Eco52I	CGGCCG	1 cut(s)	121
Eco57I	CTGAAG	1 cut(s)	612
Eco88I	CYCGRG	1 cut(s)	735
EcoRV	GATATC	1 cut(s)	937
EgeI	GGCGCC	1 cut(s)	49
EheI	GGCGCC	1 cut(s)	49
Esp3I	CGTCTC	1 cut(s)	44
FaeI	CATG	8 cut(s)	82, 91, 581, 632, 757, 848, 980, 986
FatI	CATG	8 cut(s)	78, 87, 577, 628, 753, 844, 976, 982
FauI	CCCGC	2 cut(s)	1002, 1006
FbaI	TGATCA	1 cut(s)	159
Fnu4HI	GCNGC	3 cut(s)	285, 388, 633
FokI	GGATG	3 cut(s)	224, 416, 436
Fsp4HI	GCNGC	3 cut(s)	285, 388, 633
FspBI	CTAG	2 cut(s)	288, 356
GlaI	GCGC	1 cut(s)	49
GluI	GCNGC	3 cut(s)	285, 388, 633
HaeII	RGCGCY	1 cut(s)	51
HaeIII	GGCC	1 cut(s)	123
HapII	CCGG	5 cut(s)	45, 58, 120, 124, 544
HgaI	GACGC	1 cut(s)	82
HhaI	GCGC	1 cut(s)	50
Hin1I	GRCGYC	1 cut(s)	48
Hin1II	CATG	8 cut(s)	82, 91, 581, 632, 757, 848, 980, 986
Hin6I	GCGC	1 cut(s)	48
HinP1I	GCGC	1 cut(s)	48
HincII	GTYRAC	2 cut(s)	279, 670
HindII	GTYRAC	2 cut(s)	279, 670
HindIII	AAGCTT	1 cut(s)	876
HinfI	GANTC	2 cut(s)	137, 584
HpaII	CCGG	5 cut(s)	45, 58, 120, 124, 544
HphI	GGTGA	1 cut(s)	373
Hpy166II	GTNNAC	2 cut(s)	279, 670
Hpy188I	TCNGA	5 cut(s)	66, 142, 592, 778, 947
Hpy188III	TCNNGA	5 cut(s)	70, 266, 442, 569, 965
Hpy8I	GTNNAC	2 cut(s)	279, 670
Hpy99I	CGWCG	3 cut(s)	76, 119, 677
HpyAV	CCTTC	3 cut(s)	109, 290, 457
HpyCH4IV	ACGT	2 cut(s)	114, 218
HpyCH4V	TGCA	8 cut(s)	16, 237, 284, 390, 407, 500, 716, 753
HpyF10VI	GCNNNNNNNGC	6 cut(s)	101, 632, 704, 713, 1019, 1028
HpyF3I	CTNAG	4 cut(s)	552, 651, 777, 855
HpySE526I	ACGT	2 cut(s)	114, 218
Hsp92I	GRCGYC	1 cut(s)	48
Hsp92II	CATG	8 cut(s)	82, 91, 581, 632, 757, 848, 980, 986
HspAI	GCGC	1 cut(s)	48
KasI	GGCGCC	1 cut(s)	47
KroI	GCCGGC	2 cut(s)	119, 123
KroNI	GCCGGC	2 cut(s)	121, 125
Ksp22I	TGATCA	1 cut(s)	159
Kzo9I	GATC	5 cut(s)	26, 66, 159, 194, 947
LmnI	GCTCC	3 cut(s)	704, 1007, 1019
Lsp1109I	GCAGC	3 cut(s)	296, 374, 619
LweI	GCATC	3 cut(s)	3, 394, 685
MaeI	CTAG	2 cut(s)	288, 356
MaeII	ACGT	2 cut(s)	114, 218
MalI	GATC	5 cut(s)	28, 68, 161, 196, 949
MboI	GATC	5 cut(s)	26, 66, 159, 194, 947
MboII	GAAGA	3 cut(s)	22, 504, 605
MflI	RGATCY	2 cut(s)	26, 66
MhlI	GDGCHC	1 cut(s)	37
MluCI	AATT	3 cut(s)	408, 614, 887
Mly113I	GGCGCC	1 cut(s)	48
MlyI	GAGTC	1 cut(s)	593
MnlI	CCTC	4 cut(s)	115, 744, 1010, 1015
MroNI	GCCGGC	2 cut(s)	119, 123
MseI	TTAA	2 cut(s)	327, 972
MslI	CAYNNNNRTG	1 cut(s)	981
MspI	CCGG	5 cut(s)	45, 58, 120, 124, 544
Mva1269I	GAATGC	1 cut(s)	652
MvnI	CGCG	1 cut(s)	1009
MwoI	GCNNNNNNNGC	6 cut(s)	101, 632, 704, 713, 1019, 1028
NaeI	GCCGGC	2 cut(s)	121, 125
NarI	GGCGCC	1 cut(s)	48
NdeII	GATC	5 cut(s)	26, 66, 159, 194, 947
NgoMIV	GCCGGC	2 cut(s)	119, 123
NlaIII	CATG	8 cut(s)	82, 91, 581, 632, 757, 848, 980, 986
NlaIV	GGNNCC	3 cut(s)	28, 49, 68
NmeAIII	GCCGAG	1 cut(s)	807
NspI	RCATGY	1 cut(s)	980
PciI	ACATGT	1 cut(s)	976
PctI	GAATGC	1 cut(s)	652
PdiI	GCCGGC	2 cut(s)	121, 125
PfeI	GAWTC	1 cut(s)	137
PkrI	GCNGC	3 cut(s)	286, 389, 634
PleI	GAGTC	1 cut(s)	592
PluTI	GGCGCC	1 cut(s)	51
PpsI	GAGTC	1 cut(s)	592
PscI	ACATGT	1 cut(s)	976
PspN4I	GGNNCC	3 cut(s)	28, 49, 68
PspPI	GGNCC	1 cut(s)	520
PstI	CTGCAG	2 cut(s)	239, 286
PsuI	RGATCY	2 cut(s)	26, 66
RsaI	GTAC	1 cut(s)	919
RsaNI	GTAC	1 cut(s)	918
RseI	CAYNNNNRTG	1 cut(s)	981
SaqAI	TTAA	2 cut(s)	327, 972
SatI	GCNGC	3 cut(s)	285, 388, 633
Sau3AI	GATC	5 cut(s)	26, 66, 159, 194, 947
Sau96I	GGNCC	1 cut(s)	520
SbfI	CCTGCAGG	1 cut(s)	239
SchI	GAGTC	1 cut(s)	593
SdaI	CCTGCAGG	1 cut(s)	239
SduI	GDGCHC	1 cut(s)	37
SfaNI	GCATC	3 cut(s)	3, 394, 685
SfcI	CTRYAG	2 cut(s)	235, 282
SfoI	GGCGCC	1 cut(s)	49
SinI	GGWCC	1 cut(s)	520
SmiMI	CAYNNNNRTG	1 cut(s)	981
SmlI	CTYRAG	2 cut(s)	266, 873
SmoI	CTYRAG	2 cut(s)	266, 873
SpeI	ACTAGT	1 cut(s)	355
Sse8387I	CCTGCAGG	1 cut(s)	239
Sse9I	AATT	3 cut(s)	408, 614, 887
SsiI	CCGC	3 cut(s)	841, 1009, 1013
SspDI	GGCGCC	1 cut(s)	47
SspI	AATATT	1 cut(s)	691
SspMI	CTAG	2 cut(s)	288, 356
TaiI	ACGT	2 cut(s)	117, 221
TaqI	TCGA	1 cut(s)	478
TaqII	GACCGA	1 cut(s)	537
TasI	AATT	3 cut(s)	408, 614, 887
TfiI	GAWTC	1 cut(s)	137
Tru1I	TTAA	2 cut(s)	327, 972
Tru9I	TTAA	2 cut(s)	327, 972
TscAI	CASTG	3 cut(s)	37, 213, 946
TseI	GCWGC	3 cut(s)	284, 387, 632
TspDTI	ATGAA	4 cut(s)	550, 552, 770, 813
TspGWI	ACGGA	2 cut(s)	345, 905
TspRI	CASTG	3 cut(s)	37, 213, 946
VpaK11BI	GGWCC	1 cut(s)	520
XapI	RAATTY	1 cut(s)	887
XceI	RCATGY	1 cut(s)	980
XspI	CTAG	2 cut(s)	288, 356

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.