Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0002108

Physical Location & Seq

Genomic Coordinates Forward (+)

66283566 .. 66285181

Gene Structure 1616 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG440400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGCCGAGCAAGGCTCCTCCACGTGTCTCCGGCAAGGTTTTCCGATCCCGGATTCCGACTCTGCTGGTCTCAATGTTCGCCAGCTTCGCCTCAATCTACGTCGCCGGACGGTTGTGGCAGGACTCGGAGAACAGGGTTTATTTGATTAAAGAGCTTGATAGGATTACTGGGAAGGGGGGTTCTGTCATATCAGTGGATGATACGTTGAAAATCATAGCTTGCAGGGAACAACATAAGAAGTTATCAGCAGTTGAGATGGAGTTGGCTGCAGCCAAACAAGAGGGTTTTAGTCTAAAGCGTTCAACACTGGGAAATGGAACCAGGCCACTGGTGGTGATTGGAATTTTCACAAAGTTTGGTCGTAAGAACAATAGAGACGCAATTCGTAAGGCGTGGATGGGAACTGGTTCTGCTTTGAAAAATATGGAGAATCAGAAGGGAGTAATTGCAAGATTTGTTATTGGAAGAAGTGCAAATCGCGGGGATAGTTTGGACATAGCCATTGACAATGAAAACAGGCAGACCAAAGACTTCCTTATTCTGGATACCCATCTGGAGGCCCCTGAAGAGTTCTCAAAGAAGGCTAAACTGTTCTTCGCTCATGTTGCTGATAAATGGGATGCTGAGTTTTATGCCAAAGTCAATGATGATGTTTATGTAAATATTGGTAAGTATTACATGGACTCATTTTTCAAAAGGCATTTTCATGATACTTTATATCCAACTGGAAAATCCAATTTGTTTCTGTACCAGCTCTGCTTCCTCACAATTGCTACCCCCTCCCTTTGTTTTAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0006029 GO:0006464 GO:0006486 GO:0006493 GO:0006807 GO:0008150 GO:0008152 GO:0008378 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0010384 GO:0010404 GO:0010405 GO:0012505 GO:0016740 GO:0016757 GO:0016758 GO:0018193 GO:0018208 GO:0018258 GO:0019538 GO:0031410 GO:0031982 GO:0031984 GO:0034645 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044036 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0070085 GO:0071554 GO:0071704 GO:0097708 GO:0098791 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1990714

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4094 Galactosyl_T

Protein Analysis

265

Amino Acids

29.92

Weight (kDa)

9.58

Isoelectric Point (pI)

31.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Galactosyl_T	PF01762	124 - 224	4e-15	Galactosyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002108)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G53340 AT5G53340
fragaria_vesca	FvH4_5g03830 FvH4_5g03830 FvH4_5g03830 FvH4_5g03830 FvH4_5g03830 FvH4_5g03830 FvH4_5g03830 FvH4_7g30880 FvH4_7g30880 FvH4_7g30880 FvH4_7g30880 FvH4_7g30880
malus_domestica	MD01G1213800.v1.1 MD06G1099700.v1.1 MD07G1283500.v1.1 MD14G1119400.v1.1
prunus_persica	Prupe.2G305900_v2.0.a1 Prupe.5G113400_v2.0.a1 Prupe.5G113400_v2.0.a1
pyrus_communis	pycom01g22450 pycom06g09500 pycom07g25760
rosa_chinensis	RchiOBHm_Chr1g0379951 RchiOBHm_Chr7g0195671
rosa_laevigata	RLG00000026346
rosa_multiflora	Rmu_sc0003314.1_g000015 Rmu_sc0004184.1_g000018 Rmu_sc0016754.1_g000001 Rmu_sc0035510.1_g000001
rosa_roxburghii	Rroxscaffold_3G00260230 Rroxscaffold_4G00279830
rosa_rugosa	Rorug01G0415900 Rorug07G0025600
rosa_samantha	Rh1AG440400 Rh1BG396200 Rh1DG427000 Rh7AG153400 Rh7BG154600 Rh7CG158600 Rh7CG158700
rosa_wichuraiana	Rw1G038290 Rw7G013100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	480
AciI	CCGC	1 cut(s)	480
AclWI	GGATC	1 cut(s)	39
AcsI	RAATTY	1 cut(s)	342
AcuI	CTGAAG	1 cut(s)	585
AcvI	CACGTG	1 cut(s)	23
AfaI	GTAC	1 cut(s)	749
AfiI	CCNNNNNNNGG	2 cut(s)	541, 556
AflIII	ACRYGT	1 cut(s)	22
AgsI	TTSAA	4 cut(s)	208, 303, 418, 694
AjnI	CCWGG	1 cut(s)	320
AloI	GAACNNNNNNTCC	2 cut(s)	163, 195
AluBI	AGCT	5 cut(s)	84, 154, 218, 754, 795
AluI	AGCT	5 cut(s)	84, 154, 218, 754, 795
Alw26I	GTCTC	3 cut(s)	31, 73, 369
AlwI	GGATC	1 cut(s)	39
AoxI	GGCC	2 cut(s)	323, 558
ApeKI	GCWGC	2 cut(s)	266, 269
ApoI	RAATTY	1 cut(s)	342
Asp700I	GAANNNNTTC	1 cut(s)	406
AspS9I	GGNCC	1 cut(s)	559
AsuC2I	CCSGG	1 cut(s)	49
AsuHPI	GGTGA	1 cut(s)	346
BbrPI	CACGTG	1 cut(s)	23
BbvI	GCAGC	2 cut(s)	253, 281
BccI	CCATC	3 cut(s)	250, 391, 558
BciT130I	CCWGG	1 cut(s)	322
BciVI	GTATCC	1 cut(s)	538
BcnI	CCSGG	1 cut(s)	49
BcoDI	GTCTC	3 cut(s)	31, 73, 369
BfmI	CTRYAG	1 cut(s)	267
BfuI	GTATCC	1 cut(s)	538
BisI	GCNGC	2 cut(s)	267, 270
BlsI	GCNGC	2 cut(s)	268, 271
Bme1390I	CCNGG	2 cut(s)	49, 322
BmgT120I	GGNCC	1 cut(s)	559
BmiI	GGNNCC	3 cut(s)	15, 319, 561
BmrFI	CCNGG	2 cut(s)	49, 322
BmrI	ACTGGG	2 cut(s)	177, 317
BmsI	GCATC	1 cut(s)	610
BmuI	ACTGGG	2 cut(s)	177, 317
BplI	GAGNNNNNCTC	1 cut(s)	30
BpmI	CTGGAG	1 cut(s)	575
BpuMI	CCSGG	1 cut(s)	49
BsaAI	YACGTR	1 cut(s)	23
BsaBI	GATNNNNATC	1 cut(s)	549
BsaI	GGTCTC	1 cut(s)	73
Bsc4I	CCNNNNNNNGG	2 cut(s)	541, 556
Bse1I	ACTGG	5 cut(s)	172, 312, 333, 409, 730
Bse8I	GATNNNNATC	1 cut(s)	549
BseBI	CCWGG	1 cut(s)	322
BseGI	GGATG	3 cut(s)	202, 402, 625
BseJI	GATNNNNATC	1 cut(s)	549
BseLI	CCNNNNNNNGG	2 cut(s)	541, 556
BseMII	CTCAG	1 cut(s)	615
BseNI	ACTGG	5 cut(s)	172, 312, 333, 409, 730
BseRI	GAGGAG	1 cut(s)	6
BseXI	GCAGC	2 cut(s)	253, 281
Bsh1236I	CGCG	1 cut(s)	480
BshFI	GGCC	2 cut(s)	325, 560
BsiSI	CCGG	3 cut(s)	30, 49, 105
BslI	CCNNNNNNNGG	2 cut(s)	541, 556
BsmAI	GTCTC	3 cut(s)	31, 73, 369
BsmBI	CGTCTC	1 cut(s)	369
BsnI	GGCC	2 cut(s)	325, 560
Bso31I	GGTCTC	1 cut(s)	73
Bsp143I	GATC	1 cut(s)	44
BspACI	CCGC	1 cut(s)	480
BspANI	GGCC	2 cut(s)	325, 560
BspCNI	CTCAG	1 cut(s)	616
BspFNI	CGCG	1 cut(s)	480
BspHI	TCATGA	1 cut(s)	706
BspLI	GGNNCC	3 cut(s)	15, 319, 561
BspMAI	CTGCAG	1 cut(s)	271
BspPI	GGATC	1 cut(s)	39
BspTNI	GGTCTC	1 cut(s)	73
BsrI	ACTGG	5 cut(s)	172, 312, 333, 409, 730
BssMI	GATC	1 cut(s)	44
Bst2UI	CCWGG	1 cut(s)	322
Bst4CI	ACNGT	2 cut(s)	111, 591
Bst6I	CTCTTC	1 cut(s)	561
BstBAI	YACGTR	1 cut(s)	23
BstC8I	GCNNGC	2 cut(s)	82, 220
BstDEI	CTNAG	1 cut(s)	624
BstF5I	GGATG	3 cut(s)	202, 402, 625
BstFNI	CGCG	1 cut(s)	480
BstKTI	GATC	1 cut(s)	47
BstMAI	GTCTC	3 cut(s)	31, 73, 369
BstMBI	GATC	1 cut(s)	44
BstMWI	GCNNNNNNNGC	2 cut(s)	86, 605
BstNI	CCWGG	1 cut(s)	322
BstSCI	CCNGG	2 cut(s)	47, 320
BstSFI	CTRYAG	1 cut(s)	267
BstUI	CGCG	1 cut(s)	480
BstV1I	GCAGC	2 cut(s)	253, 281
BstXI	CCANNNNNNTGG	1 cut(s)	328
BsuI	GTATCC	1 cut(s)	538
BsuRI	GGCC	2 cut(s)	325, 560
BtsCI	GGATG	3 cut(s)	202, 402, 625
BtsIMutI	CAGTG	3 cut(s)	198, 305, 326
Cac8I	GCNNGC	2 cut(s)	82, 220
CciI	TCATGA	1 cut(s)	706
Cfr13I	GGNCC	1 cut(s)	559
CseI	GACGC	1 cut(s)	386
Csp6I	GTAC	1 cut(s)	748
CviAII	CATG	3 cut(s)	602, 679, 707
CviQI	GTAC	1 cut(s)	748
DdeI	CTNAG	1 cut(s)	624
DpnI	GATC	1 cut(s)	46
DpnII	GATC	1 cut(s)	44
Eam1104I	CTCTTC	1 cut(s)	561
EarI	CTCTTC	1 cut(s)	561
Eco31I	GGTCTC	1 cut(s)	73
Eco57I	CTGAAG	1 cut(s)	585
Eco72I	CACGTG	1 cut(s)	23
EcoO109I	RGGNCCY	1 cut(s)	559
EcoRII	CCWGG	1 cut(s)	320
Esp3I	CGTCTC	1 cut(s)	369
FaeI	CATG	3 cut(s)	605, 682, 710
FalI	AAGNNNNNCTT	2 cut(s)	519, 551
FatI	CATG	3 cut(s)	601, 678, 706
FauI	CCCGC	1 cut(s)	473
Fnu4HI	GCNGC	2 cut(s)	267, 270
FokI	GGATG	3 cut(s)	209, 409, 632
Fsp4HI	GCNGC	2 cut(s)	267, 270
GluI	GCNGC	2 cut(s)	267, 270
GsuI	CTGGAG	1 cut(s)	575
HaeIII	GGCC	2 cut(s)	325, 560
HapII	CCGG	3 cut(s)	30, 49, 105
HgaI	GACGC	1 cut(s)	386
Hin1II	CATG	3 cut(s)	605, 682, 710
HinfI	GANTC	5 cut(s)	52, 58, 122, 430, 683
HpaII	CCGG	3 cut(s)	30, 49, 105
HphI	GGTGA	1 cut(s)	346
Hpy188I	TCNGA	4 cut(s)	44, 57, 127, 435
Hpy188III	TCNNGA	3 cut(s)	542, 554, 707
Hpy99I	CGWCG	1 cut(s)	104
HpyAV	CCTTC	3 cut(s)	166, 430, 574
HpyCH4III	ACNGT	2 cut(s)	111, 591
HpyCH4IV	ACGT	3 cut(s)	22, 99, 203
HpyCH4V	TGCA	4 cut(s)	222, 269, 449, 473
HpyF10VI	GCNNNNNNNGC	2 cut(s)	86, 605
HpyF3I	CTNAG	1 cut(s)	624
HpySE526I	ACGT	3 cut(s)	22, 99, 203
Hsp92II	CATG	3 cut(s)	605, 682, 710
Kzo9I	GATC	1 cut(s)	44
LmnI	GCTCC	1 cut(s)	19
Lsp1109I	GCAGC	2 cut(s)	253, 281
LweI	GCATC	1 cut(s)	610
MaeII	ACGT	3 cut(s)	22, 99, 203
MalI	GATC	1 cut(s)	46
MboI	GATC	1 cut(s)	44
MboII	GAAGA	3 cut(s)	477, 578, 586
MfeI	CAATTG	1 cut(s)	768
MluCI	AATT	5 cut(s)	342, 381, 444, 736, 768
MlyI	GAGTC	3 cut(s)	52, 116, 677
MmeI	TCCRAC	2 cut(s)	80, 746
MnlI	CCTC	6 cut(s)	27, 100, 274, 550, 773, 790
MroXI	GAANNNNTTC	1 cut(s)	406
MseI	TTAA	1 cut(s)	147
MslI	CAYNNNNRTG	2 cut(s)	191, 705
MspI	CCGG	3 cut(s)	30, 49, 105
MspR9I	CCNGG	2 cut(s)	49, 322
MunI	CAATTG	1 cut(s)	768
MvaI	CCWGG	1 cut(s)	322
MvnI	CGCG	1 cut(s)	480
MwoI	GCNNNNNNNGC	2 cut(s)	86, 605
NciI	CCSGG	1 cut(s)	49
NdeII	GATC	1 cut(s)	44
NlaIII	CATG	3 cut(s)	605, 682, 710
NlaIV	GGNNCC	3 cut(s)	15, 319, 561
NmeAIII	GCCGAG	1 cut(s)	30
PagI	TCATGA	1 cut(s)	706
PdmI	GAANNNNTTC	1 cut(s)	406
PfeI	GAWTC	2 cut(s)	52, 430
PfoI	TCCNGGA	1 cut(s)	47
PkrI	GCNGC	2 cut(s)	268, 271
PleI	GAGTC	3 cut(s)	52, 116, 677
PmaCI	CACGTG	1 cut(s)	23
PmlI	CACGTG	1 cut(s)	23
PpsI	GAGTC	3 cut(s)	52, 116, 677
Ppu21I	YACGTR	1 cut(s)	23
Psp6I	CCWGG	1 cut(s)	320
PspCI	CACGTG	1 cut(s)	23
PspGI	CCWGG	1 cut(s)	320
PspN4I	GGNNCC	3 cut(s)	15, 319, 561
PspPI	GGNCC	1 cut(s)	559
PstI	CTGCAG	1 cut(s)	271
RsaI	GTAC	1 cut(s)	749
RsaNI	GTAC	1 cut(s)	748
RseI	CAYNNNNRTG	2 cut(s)	191, 705
SaqAI	TTAA	1 cut(s)	147
SatI	GCNGC	2 cut(s)	267, 270
Sau3AI	GATC	1 cut(s)	44
Sau96I	GGNCC	1 cut(s)	559
SchI	GAGTC	3 cut(s)	52, 116, 677
ScrFI	CCNGG	2 cut(s)	49, 322
SetI	ASST	9 cut(s)	25, 39, 86, 102, 156, 206, 220, 756, 797
SfaNI	GCATC	1 cut(s)	610
SfcI	CTRYAG	1 cut(s)	267
SmiMI	CAYNNNNRTG	2 cut(s)	191, 705
Sse9I	AATT	5 cut(s)	342, 381, 444, 736, 768
SsiI	CCGC	1 cut(s)	480
SspI	AATATT	1 cut(s)	664
StyD4I	CCNGG	2 cut(s)	47, 320
TaaI	ACNGT	2 cut(s)	111, 591
TaiI	ACGT	3 cut(s)	25, 102, 206
TasI	AATT	5 cut(s)	342, 381, 444, 736, 768
TfiI	GAWTC	2 cut(s)	52, 430
Tru1I	TTAA	1 cut(s)	147
Tru9I	TTAA	1 cut(s)	147
TscAI	CASTG	3 cut(s)	198, 312, 333
TseI	GCWGC	2 cut(s)	266, 269
TspDTI	ATGAA	2 cut(s)	525, 695
TspRI	CASTG	3 cut(s)	198, 312, 333
XapI	RAATTY	1 cut(s)	342
XcmI	CCANNNNNNNNNTGG	1 cut(s)	328
XmnI	GAANNNNTTC	1 cut(s)	406

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.