Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0002108

Physical Location & Seq

Genomic Coordinates Reverse (-)

12983358 .. 12985679

Gene Structure 2322 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG158600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGGAGACAGTTTGGACAAGCAAATCGACAGTGAAAGATGGTCAAGTAGAGGCATATGAGGAGGGTCCAAAAAAGATGAAATCATTCTTTATTCATGCTGTAGAGAGCTGGGATGCTGAGTTTTATGTCAAGGTCAATGATGATGTTTTTATTAATATTGATGTCCTTGGAGCAACACTAACTACTTATATGAATAAGCCTCGTGTCTACATTGGGTGCATGAAATCAGGCGAAGTTTTCTCTGAACCGACACACAAGTGGTACGAACCAGACTGGTGGAAATTTGGTGACGCAAAATCATACCCTAGACATGCATCTGGTGAAATGTATGCCATTTCTAGAGCATTAGCTCAGTTTATATCAATAAATAGGTCTATTCTTCGTACATATGCTCATGATGATGTTAGTGCTGGATCATGGTTTATTGGGCTTGATGTGAAGCACATTGATGACCGAAAGTTTTGCTGCAACTCCTGGTCTCCAGGAGCAATCTGTACAGCTGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0006029 GO:0006464 GO:0006486 GO:0006493 GO:0006807 GO:0008150 GO:0008152 GO:0008378 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0010384 GO:0010404 GO:0010405 GO:0012505 GO:0016740 GO:0016757 GO:0016758 GO:0018193 GO:0018208 GO:0018258 GO:0019538 GO:0031410 GO:0031982 GO:0031984 GO:0034645 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044036 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0070085 GO:0071554 GO:0071704 GO:0097708 GO:0098791 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1990714

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4094 Galactosyl_T

Protein Analysis

168

Amino Acids

19.2

Weight (kDa)

5.94

Isoelectric Point (pI)

41.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Galactosyl_T	PF01762	16 - 151	1.3e-25	Galactosyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002108)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G53340 AT5G53340
fragaria_vesca	FvH4_5g03830 FvH4_5g03830 FvH4_5g03830 FvH4_5g03830 FvH4_5g03830 FvH4_5g03830 FvH4_5g03830 FvH4_7g30880 FvH4_7g30880 FvH4_7g30880 FvH4_7g30880 FvH4_7g30880
malus_domestica	MD01G1213800.v1.1 MD06G1099700.v1.1 MD07G1283500.v1.1 MD14G1119400.v1.1
prunus_persica	Prupe.2G305900_v2.0.a1 Prupe.5G113400_v2.0.a1 Prupe.5G113400_v2.0.a1
pyrus_communis	pycom01g22450 pycom06g09500 pycom07g25760
rosa_chinensis	RchiOBHm_Chr1g0379951 RchiOBHm_Chr7g0195671
rosa_laevigata	RLG00000026346
rosa_multiflora	Rmu_sc0003314.1_g000015 Rmu_sc0004184.1_g000018 Rmu_sc0016754.1_g000001 Rmu_sc0035510.1_g000001
rosa_roxburghii	Rroxscaffold_3G00260230 Rroxscaffold_4G00279830
rosa_rugosa	Rorug01G0415900 Rorug07G0025600
rosa_samantha	Rh1AG440400 Rh1BG396200 Rh1DG427000 Rh7AG153400 Rh7BG154600 Rh7CG158600 Rh7CG158700
rosa_wichuraiana	Rw1G038290 Rw7G013100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	207
AclWI	GGATC	1 cut(s)	421
AcsI	RAATTY	1 cut(s)	281
AfaI	GTAC	3 cut(s)	263, 385, 496
AjnI	CCWGG	2 cut(s)	473, 481
AleI	CACNNNNGTG	1 cut(s)	256
AluBI	AGCT	3 cut(s)	108, 350, 500
AluI	AGCT	3 cut(s)	108, 350, 500
Alw26I	GTCTC	1 cut(s)	483
AlwI	GGATC	1 cut(s)	421
ApeKI	GCWGC	1 cut(s)	465
ApoI	RAATTY	1 cut(s)	281
AseI	ATTAAT	1 cut(s)	153
Asp700I	GAANNNNTTC	1 cut(s)	83
AspS9I	GGNCC	1 cut(s)	65
AsuHPI	GGTGA	2 cut(s)	299, 332
AvaII	GGWCC	1 cut(s)	65
BauI	CACGAG	1 cut(s)	201
BbvI	GCAGC	1 cut(s)	452
BccI	CCATC	1 cut(s)	32
BcgI	CGANNNNNNTGC	2 cut(s)	444, 478
BciT130I	CCWGG	2 cut(s)	475, 483
BcoDI	GTCTC	1 cut(s)	483
BfaI	CTAG	2 cut(s)	306, 339
BfmI	CTRYAG	1 cut(s)	99
BisI	GCNGC	1 cut(s)	466
BlsI	GCNGC	1 cut(s)	467
Bme1390I	CCNGG	2 cut(s)	475, 483
Bme18I	GGWCC	1 cut(s)	65
BmgT120I	GGNCC	1 cut(s)	65
BmiI	GGNNCC	1 cut(s)	66
BmrFI	CCNGG	2 cut(s)	475, 483
BmsI	GCATC	2 cut(s)	103, 323
BpmI	CTGGAG	1 cut(s)	465
BsaI	GGTCTC	1 cut(s)	483
BsaJI	CCNNGG	1 cut(s)	166
Bse1I	ACTGG	1 cut(s)	278
BseBI	CCWGG	2 cut(s)	475, 483
BseDI	CCNNGG	1 cut(s)	166
BseGI	GGATG	1 cut(s)	118
BseMII	CTCAG	2 cut(s)	108, 365
BseNI	ACTGG	1 cut(s)	278
BseRI	GAGGAG	1 cut(s)	74
BseXI	GCAGC	1 cut(s)	452
BseYI	CCCAGC	1 cut(s)	108
BsmAI	GTCTC	1 cut(s)	483
Bso31I	GGTCTC	1 cut(s)	483
Bsp1407I	TGTACA	1 cut(s)	494
Bsp143I	GATC	1 cut(s)	413
BspCNI	CTCAG	2 cut(s)	109, 364
BspHI	TCATGA	1 cut(s)	394
BspLI	GGNNCC	1 cut(s)	66
BspPI	GGATC	1 cut(s)	421
BspTNI	GGTCTC	1 cut(s)	483
BsrGI	TGTACA	1 cut(s)	494
BsrI	ACTGG	1 cut(s)	278
BssECI	CCNNGG	1 cut(s)	166
BssMI	GATC	1 cut(s)	413
BssSI	CACGAG	1 cut(s)	201
BssT1I	CCWWGG	1 cut(s)	166
Bst2BI	CACGAG	1 cut(s)	201
Bst2UI	CCWGG	2 cut(s)	475, 483
Bst4CI	ACNGT	2 cut(s)	10, 31
BstAUI	TGTACA	1 cut(s)	494
BstDEI	CTNAG	2 cut(s)	117, 351
BstF5I	GGATG	1 cut(s)	118
BstKTI	GATC	1 cut(s)	416
BstMAI	GTCTC	1 cut(s)	483
BstMBI	GATC	1 cut(s)	413
BstNI	CCWGG	2 cut(s)	475, 483
BstNSI	RCATGY	1 cut(s)	314
BstSCI	CCNGG	2 cut(s)	473, 481
BstSFI	CTRYAG	1 cut(s)	99
BstV1I	GCAGC	1 cut(s)	452
BstXI	CCANNNNNNTGG	1 cut(s)	276
BtsCI	GGATG	1 cut(s)	118
BtsIMutI	CAGTG	1 cut(s)	36
CciI	TCATGA	1 cut(s)	394
Cfr13I	GGNCC	1 cut(s)	65
CseI	GACGC	1 cut(s)	299
Csp6I	GTAC	3 cut(s)	262, 384, 495
CviAII	CATG	5 cut(s)	95, 220, 311, 395, 417
CviJI	RGCY	5 cut(s)	108, 199, 350, 430, 500
CviKI_1	RGCY	5 cut(s)	108, 199, 350, 430, 500
CviQI	GTAC	3 cut(s)	262, 384, 495
DdeI	CTNAG	2 cut(s)	117, 351
DpnI	GATC	1 cut(s)	415
DpnII	GATC	1 cut(s)	413
Eco130I	CCWWGG	1 cut(s)	166
Eco31I	GGTCTC	1 cut(s)	483
Eco47I	GGWCC	1 cut(s)	65
EcoRII	CCWGG	2 cut(s)	473, 481
EcoT14I	CCWWGG	1 cut(s)	166
EcoT22I	ATGCAT	1 cut(s)	316
ErhI	CCWWGG	1 cut(s)	166
FaeI	CATG	5 cut(s)	98, 223, 314, 398, 420
FatI	CATG	5 cut(s)	94, 219, 310, 394, 416
FauNDI	CATATG	2 cut(s)	55, 388
FblI	GTMKAC	1 cut(s)	207
Fnu4HI	GCNGC	1 cut(s)	466
FokI	GGATG	1 cut(s)	125
Fsp4HI	GCNGC	1 cut(s)	466
FspBI	CTAG	2 cut(s)	306, 339
GluI	GCNGC	1 cut(s)	466
GsaI	CCCAGC	1 cut(s)	112
GsuI	CTGGAG	1 cut(s)	465
HgaI	GACGC	1 cut(s)	299
Hin1II	CATG	5 cut(s)	98, 223, 314, 398, 420
HphI	GGTGA	2 cut(s)	299, 332
Hpy166II	GTNNAC	1 cut(s)	208
Hpy188I	TCNGA	1 cut(s)	244
Hpy188III	TCNNGA	2 cut(s)	339, 395
Hpy8I	GTNNAC	1 cut(s)	208
HpyCH4III	ACNGT	2 cut(s)	10, 31
HpyCH4V	TGCA	3 cut(s)	219, 314, 468
HpyF3I	CTNAG	2 cut(s)	117, 351
Hsp92II	CATG	5 cut(s)	98, 223, 314, 398, 420
Kzo9I	GATC	1 cut(s)	413
LmnI	GCTCC	2 cut(s)	170, 485
Lsp1109I	GCAGC	1 cut(s)	452
LweI	GCATC	2 cut(s)	103, 323
MaeI	CTAG	2 cut(s)	306, 339
MaeIII	GTNAC	1 cut(s)	287
MalI	GATC	1 cut(s)	415
MboI	GATC	1 cut(s)	413
MboII	GAAGA	1 cut(s)	371
MluCI	AATT	1 cut(s)	281
MnlI	CCTC	4 cut(s)	43, 52, 55, 210
Mph1103I	ATGCAT	1 cut(s)	316
MroXI	GAANNNNTTC	1 cut(s)	83
MseI	TTAA	1 cut(s)	153
MslI	CAYNNNNRTG	3 cut(s)	256, 399, 447
MspA1I	CMGCKG	1 cut(s)	500
MspR9I	CCNGG	2 cut(s)	475, 483
MvaI	CCWGG	2 cut(s)	475, 483
NdeI	CATATG	2 cut(s)	55, 388
NdeII	GATC	1 cut(s)	413
NlaIII	CATG	5 cut(s)	98, 223, 314, 398, 420
NlaIV	GGNNCC	1 cut(s)	66
NmuCI	GTSAC	1 cut(s)	287
NsiI	ATGCAT	1 cut(s)	316
NspI	RCATGY	1 cut(s)	314
OliI	CACNNNNGTG	1 cut(s)	256
PagI	TCATGA	1 cut(s)	394
PdmI	GAANNNNTTC	1 cut(s)	83
PfoI	TCCNGGA	1 cut(s)	481
PkrI	GCNGC	1 cut(s)	467
PshBI	ATTAAT	1 cut(s)	153
Psp6I	CCWGG	2 cut(s)	473, 481
PspFI	CCCAGC	1 cut(s)	108
PspGI	CCWGG	2 cut(s)	473, 481
PspN4I	GGNNCC	1 cut(s)	66
PspPI	GGNCC	1 cut(s)	65
PvuII	CAGCTG	1 cut(s)	500
RsaI	GTAC	3 cut(s)	263, 385, 496
RsaNI	GTAC	3 cut(s)	262, 384, 495
RseI	CAYNNNNRTG	3 cut(s)	256, 399, 447
SaqAI	TTAA	1 cut(s)	153
SatI	GCNGC	1 cut(s)	466
Sau3AI	GATC	1 cut(s)	413
Sau96I	GGNCC	1 cut(s)	65
ScrFI	CCNGG	2 cut(s)	475, 483
SetI	ASST	5 cut(s)	110, 135, 352, 374, 502
SfaNI	GCATC	2 cut(s)	103, 323
SfcI	CTRYAG	1 cut(s)	99
SinI	GGWCC	1 cut(s)	65
SmiMI	CAYNNNNRTG	3 cut(s)	256, 399, 447
Sse9I	AATT	1 cut(s)	281
SspI	AATATT	1 cut(s)	157
SspMI	CTAG	2 cut(s)	306, 339
StyD4I	CCNGG	2 cut(s)	473, 481
StyI	CCWWGG	1 cut(s)	166
TaaI	ACNGT	2 cut(s)	10, 31
TaqI	TCGA	1 cut(s)	26
TaqII	GACCGA	1 cut(s)	468
TasI	AATT	1 cut(s)	281
TatI	WGTACW	1 cut(s)	494
Tru1I	TTAA	1 cut(s)	153
Tru9I	TTAA	1 cut(s)	153
TscAI	CASTG	1 cut(s)	36
TseFI	GTSAC	1 cut(s)	287
TseI	GCWGC	1 cut(s)	465
Tsp45I	GTSAC	1 cut(s)	287
TspDTI	ATGAA	4 cut(s)	83, 92, 206, 236
TspRI	CASTG	1 cut(s)	36
VpaK11BI	GGWCC	1 cut(s)	65
VspI	ATTAAT	1 cut(s)	153
XapI	RAATTY	1 cut(s)	281
XbaI	TCTAGA	1 cut(s)	338
XceI	RCATGY	1 cut(s)	314
XmiI	GTMKAC	1 cut(s)	207
XmnI	GAANNNNTTC	1 cut(s)	83
XspI	CTAG	2 cut(s)	306, 339
Zsp2I	ATGCAT	1 cut(s)	316

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.