Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0002108

Physical Location & Seq

Genomic Coordinates Reverse (-)

2504641 .. 2508349

Gene Structure 3709 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00279830.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

ATGAGGTTGCTGCCCAGCTTAAAGTTGATGGGGGGTTCTGTCATATCAGTGGATGATACGTTGAAAATCATAGCTTGCAGGGAACAACATAAGAAGTTATCAGCAGTTGAGATGGAGTTGGCTGCAGCCAAACAAGAGGGTTTTAGTCTAAAGCGTTCAATGCTGGGAAATGGAACCAGGCCACTGGTGGTGATTGGAATTTTCACAAAGTTTGGTCGTAAGAACAATAGAGATGCAATTCGTAAGGCGTGGATGGGAACTGGTTCTGCTTTGAAAAATATGGAGAATCAGAAGGGAGTAATTGCAAGATTTGTTATTGGAAGAAGTGCAAATCGCGGGGATAGTTTGGACATAGCCATTGACAATGAAAACAGGCAGACCAAAGACTTCCTTATTCTGGATACCCATCTGGAGGCACCTGAAGAGTTCTCGAAGAAGGCTAAACTGTTCTTCGCTCATGTTGCTGATAAATGGGATGCTGAGTTTTATGCCAAAGTCAATGATGATGTTTATGTAAATATTGATGTTCTGGGAGCTACACTTGCAACTCATTTAGACAAGCCTCGCGTTTATATTGGGTGCATGAAGTCAGGCGAAGTTTTCTCTGAGCCGAGTCACAAGTGGTATGAACCTGAATGGTGGAAGTTTGGTGATAAAAAATCATATTTTCGCCATGCTTCAGCTGAGATGTATGTCATATCTCAAGCTCTGGCCAAATTTGTTTCAATAAATAGAGATATTCTCCGTACCTACGCCCATGATGATGTCAGTGTCGGATCTTGGTTTATTGGGCTTGATGTTAAACATCTTAATGACGCCAAGTTTTGCTGCTCCTCTTGGACGGGAGGAGCTATTTGTGCTGGTGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0006029 GO:0006464 GO:0006486 GO:0006493 GO:0006807 GO:0008150 GO:0008152 GO:0008378 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0010384 GO:0010404 GO:0010405 GO:0012505 GO:0016740 GO:0016757 GO:0016758 GO:0018193 GO:0018208 GO:0018258 GO:0019538 GO:0031410 GO:0031982 GO:0031984 GO:0034645 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044036 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0070085 GO:0071554 GO:0071704 GO:0097708 GO:0098791 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1990714

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4094 Galactosyl_T

Protein Analysis

289

Amino Acids

32.42

Weight (kDa)

8.94

Isoelectric Point (pI)

27.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Galactosyl_T	PF01762	76 - 271	1.2e-35	Galactosyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002108)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G53340 AT5G53340
fragaria_vesca	FvH4_5g03830 FvH4_5g03830 FvH4_5g03830 FvH4_5g03830 FvH4_5g03830 FvH4_5g03830 FvH4_5g03830 FvH4_7g30880 FvH4_7g30880 FvH4_7g30880 FvH4_7g30880 FvH4_7g30880
malus_domestica	MD01G1213800.v1.1 MD06G1099700.v1.1 MD07G1283500.v1.1 MD14G1119400.v1.1
prunus_persica	Prupe.2G305900_v2.0.a1 Prupe.5G113400_v2.0.a1 Prupe.5G113400_v2.0.a1
pyrus_communis	pycom01g22450 pycom06g09500 pycom07g25760
rosa_chinensis	RchiOBHm_Chr1g0379951 RchiOBHm_Chr7g0195671
rosa_laevigata	RLG00000026346
rosa_multiflora	Rmu_sc0003314.1_g000015 Rmu_sc0004184.1_g000018 Rmu_sc0016754.1_g000001 Rmu_sc0035510.1_g000001
rosa_roxburghii	Rroxscaffold_3G00260230 Rroxscaffold_4G00279830
rosa_rugosa	Rorug01G0415900 Rorug07G0025600
rosa_samantha	Rh1AG440400 Rh1BG396200 Rh1DG427000 Rh7AG153400 Rh7BG154600 Rh7CG158600 Rh7CG158700
rosa_wichuraiana	Rw1G038290 Rw7G013100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	415
AccII	CGCG	2 cut(s)	336, 567
AciI	CCGC	1 cut(s)	336
AclWI	GGATC	1 cut(s)	784
AcoI	YGGCCR	1 cut(s)	711
AcsI	RAATTY	2 cut(s)	198, 716
AcuI	CTGAAG	2 cut(s)	441, 663
AcyI	GRCGYC	1 cut(s)	816
AfaI	GTAC	1 cut(s)	748
AfiI	CCNNNNNNNGG	2 cut(s)	397, 412
AgsI	TTSAA	4 cut(s)	64, 159, 274, 726
AjnI	CCWGG	1 cut(s)	176
AluBI	AGCT	6 cut(s)	18, 74, 536, 683, 707, 851
AluI	AGCT	6 cut(s)	18, 74, 536, 683, 707, 851
AlwI	GGATC	1 cut(s)	784
AoxI	GGCC	2 cut(s)	179, 711
ApeKI	GCWGC	4 cut(s)	10, 122, 125, 828
ApoI	RAATTY	2 cut(s)	198, 716
Asp700I	GAANNNNTTC	1 cut(s)	262
AsuHPI	GGTGA	2 cut(s)	202, 662
BalI	TGGCCA	1 cut(s)	713
BanI	GGYRCC	1 cut(s)	415
BbvI	GCAGC	3 cut(s)	109, 137, 815
BccI	CCATC	4 cut(s)	22, 106, 247, 414
BciT130I	CCWGG	1 cut(s)	178
BciVI	GTATCC	1 cut(s)	394
BfmI	CTRYAG	1 cut(s)	123
BfuI	GTATCC	1 cut(s)	394
BisI	GCNGC	4 cut(s)	11, 123, 126, 829
BlsI	GCNGC	4 cut(s)	12, 124, 127, 830
Bme1390I	CCNGG	1 cut(s)	178
BmiI	GGNNCC	2 cut(s)	175, 417
BmrFI	CCNGG	1 cut(s)	178
BmsI	GCATC	2 cut(s)	223, 466
BplI	GAGNNNNNCTC	2 cut(s)	726, 758
BpmI	CTGGAG	1 cut(s)	431
BpuEI	CTTGAG	1 cut(s)	687
BsaBI	GATNNNNATC	1 cut(s)	405
BsaHI	GRCGYC	1 cut(s)	816
Bsc4I	CCNNNNNNNGG	2 cut(s)	397, 412
Bse1I	ACTGG	2 cut(s)	189, 265
Bse8I	GATNNNNATC	1 cut(s)	405
BseBI	CCWGG	1 cut(s)	178
BseGI	GGATG	3 cut(s)	58, 258, 481
BseJI	GATNNNNATC	1 cut(s)	405
BseLI	CCNNNNNNNGG	2 cut(s)	397, 412
BseMII	CTCAG	3 cut(s)	471, 597, 675
BseNI	ACTGG	2 cut(s)	189, 265
BseRI	GAGGAG	2 cut(s)	823, 861
BseXI	GCAGC	3 cut(s)	109, 137, 815
BseYI	CCCAGC	2 cut(s)	14, 163
Bsh1236I	CGCG	2 cut(s)	336, 567
BshFI	GGCC	2 cut(s)	181, 713
BshNI	GGYRCC	1 cut(s)	415
BslI	CCNNNNNNNGG	2 cut(s)	397, 412
BsnI	GGCC	2 cut(s)	181, 713
Bsp143I	GATC	1 cut(s)	776
BspACI	CCGC	1 cut(s)	336
BspANI	GGCC	2 cut(s)	181, 713
BspCNI	CTCAG	3 cut(s)	472, 598, 676
BspFNI	CGCG	2 cut(s)	336, 567
BspLI	GGNNCC	2 cut(s)	175, 417
BspMAI	CTGCAG	1 cut(s)	127
BspPI	GGATC	1 cut(s)	784
BspT107I	GGYRCC	1 cut(s)	415
BsrI	ACTGG	2 cut(s)	189, 265
BssMI	GATC	1 cut(s)	776
BssNI	GRCGYC	1 cut(s)	816
Bst2UI	CCWGG	1 cut(s)	178
Bst4CI	ACNGT	1 cut(s)	447
Bst6I	CTCTTC	1 cut(s)	417
BstACI	GRCGYC	1 cut(s)	816
BstC8I	GCNNGC	1 cut(s)	76
BstDEI	CTNAG	3 cut(s)	480, 606, 684
BstF5I	GGATG	3 cut(s)	58, 258, 481
BstFNI	CGCG	2 cut(s)	336, 567
BstKTI	GATC	1 cut(s)	779
BstMBI	GATC	1 cut(s)	776
BstMWI	GCNNNNNNNGC	4 cut(s)	160, 461, 542, 857
BstNI	CCWGG	1 cut(s)	178
BstSCI	CCNGG	1 cut(s)	176
BstSFI	CTRYAG	1 cut(s)	123
BstUI	CGCG	2 cut(s)	336, 567
BstV1I	GCAGC	3 cut(s)	109, 137, 815
BstX2I	RGATCY	1 cut(s)	776
BstXI	CCANNNNNNTGG	1 cut(s)	184
BstYI	RGATCY	1 cut(s)	776
BsuI	GTATCC	1 cut(s)	394
BsuRI	GGCC	2 cut(s)	181, 713
BtsCI	GGATG	3 cut(s)	58, 258, 481
BtsIMutI	CAGTG	3 cut(s)	54, 182, 775
Cac8I	GCNNGC	1 cut(s)	76
CseI	GACGC	1 cut(s)	824
Csp6I	GTAC	1 cut(s)	747
CviAII	CATG	4 cut(s)	458, 583, 674, 758
CviQI	GTAC	1 cut(s)	747
DdeI	CTNAG	3 cut(s)	480, 606, 684
DpnI	GATC	1 cut(s)	778
DpnII	GATC	1 cut(s)	776
EaeI	YGGCCR	1 cut(s)	711
Eam1104I	CTCTTC	1 cut(s)	417
EarI	CTCTTC	1 cut(s)	417
Eco57I	CTGAAG	2 cut(s)	441, 663
EcoRII	CCWGG	1 cut(s)	176
FaeI	CATG	4 cut(s)	461, 586, 677, 761
FalI	AAGNNNNNCTT	2 cut(s)	375, 407
FatI	CATG	4 cut(s)	457, 582, 673, 757
FauI	CCCGC	1 cut(s)	329
Fnu4HI	GCNGC	4 cut(s)	11, 123, 126, 829
FokI	GGATG	3 cut(s)	65, 265, 488
Fsp4HI	GCNGC	4 cut(s)	11, 123, 126, 829
GluI	GCNGC	4 cut(s)	11, 123, 126, 829
GsaI	CCCAGC	2 cut(s)	18, 167
GsuI	CTGGAG	1 cut(s)	431
HaeIII	GGCC	2 cut(s)	181, 713
HgaI	GACGC	1 cut(s)	824
Hin1I	GRCGYC	1 cut(s)	816
Hin1II	CATG	4 cut(s)	461, 586, 677, 761
HinfI	GANTC	2 cut(s)	286, 613
HphI	GGTGA	2 cut(s)	202, 662
Hpy188I	TCNGA	3 cut(s)	291, 607, 776
Hpy188III	TCNNGA	3 cut(s)	398, 410, 430
HpyAV	CCTTC	2 cut(s)	286, 430
HpyCH4III	ACNGT	1 cut(s)	447
HpyCH4IV	ACGT	1 cut(s)	59
HpyCH4V	TGCA	7 cut(s)	78, 125, 236, 305, 329, 545, 582
HpyF10VI	GCNNNNNNNGC	4 cut(s)	160, 461, 542, 857
HpyF3I	CTNAG	3 cut(s)	480, 606, 684
HpySE526I	ACGT	1 cut(s)	59
Hsp92I	GRCGYC	1 cut(s)	816
Hsp92II	CATG	4 cut(s)	461, 586, 677, 761
Kzo9I	GATC	1 cut(s)	776
LmnI	GCTCC	3 cut(s)	533, 836, 848
Lsp1109I	GCAGC	3 cut(s)	109, 137, 815
LweI	GCATC	2 cut(s)	223, 466
MaeII	ACGT	1 cut(s)	59
MaeIII	GTNAC	1 cut(s)	614
MalI	GATC	1 cut(s)	778
MboI	GATC	1 cut(s)	776
MboII	GAAGA	4 cut(s)	333, 434, 442, 445
MflI	RGATCY	1 cut(s)	776
MlsI	TGGCCA	1 cut(s)	713
MluCI	AATT	4 cut(s)	198, 237, 300, 716
MluNI	TGGCCA	1 cut(s)	713
MlyI	GAGTC	1 cut(s)	622
MmeI	TCCRAC	1 cut(s)	754
MnlI	CCTC	5 cut(s)	130, 406, 573, 839, 844
Mox20I	TGGCCA	1 cut(s)	713
MroXI	GAANNNNTTC	1 cut(s)	262
MscI	TGGCCA	1 cut(s)	713
MseI	TTAA	3 cut(s)	20, 801, 810
MslI	CAYNNNNRTG	3 cut(s)	47, 762, 810
Msp20I	TGGCCA	1 cut(s)	713
MspA1I	CMGCKG	1 cut(s)	683
MspR9I	CCNGG	1 cut(s)	178
MvaI	CCWGG	1 cut(s)	178
MvnI	CGCG	2 cut(s)	336, 567
MwoI	GCNNNNNNNGC	4 cut(s)	160, 461, 542, 857
NdeII	GATC	1 cut(s)	776
NlaIII	CATG	4 cut(s)	461, 586, 677, 761
NlaIV	GGNNCC	2 cut(s)	175, 417
NmeAIII	GCCGAG	1 cut(s)	636
NmuCI	GTSAC	1 cut(s)	614
PdmI	GAANNNNTTC	1 cut(s)	262
PfeI	GAWTC	1 cut(s)	286
PkrI	GCNGC	4 cut(s)	12, 124, 127, 830
PleI	GAGTC	1 cut(s)	621
PpsI	GAGTC	1 cut(s)	621
Psp6I	CCWGG	1 cut(s)	176
PspFI	CCCAGC	2 cut(s)	14, 163
PspGI	CCWGG	1 cut(s)	176
PspN4I	GGNNCC	2 cut(s)	175, 417
PstI	CTGCAG	1 cut(s)	127
PsuI	RGATCY	1 cut(s)	776
PvuII	CAGCTG	1 cut(s)	683
RsaI	GTAC	1 cut(s)	748
RsaNI	GTAC	1 cut(s)	747
RseI	CAYNNNNRTG	3 cut(s)	47, 762, 810
SaqAI	TTAA	3 cut(s)	20, 801, 810
SatI	GCNGC	4 cut(s)	11, 123, 126, 829
Sau3AI	GATC	1 cut(s)	776
SchI	GAGTC	1 cut(s)	622
ScrFI	CCNGG	1 cut(s)	178
SfaNI	GCATC	2 cut(s)	223, 466
SfcI	CTRYAG	1 cut(s)	123
SmiMI	CAYNNNNRTG	3 cut(s)	47, 762, 810
SmlI	CTYRAG	1 cut(s)	702
SmoI	CTYRAG	1 cut(s)	702
Sse9I	AATT	4 cut(s)	198, 237, 300, 716
SsiI	CCGC	1 cut(s)	336
SspI	AATATT	1 cut(s)	520
StyD4I	CCNGG	1 cut(s)	176
TaaI	ACNGT	1 cut(s)	447
TaiI	ACGT	1 cut(s)	62
TaqI	TCGA	1 cut(s)	431
TasI	AATT	4 cut(s)	198, 237, 300, 716
TfiI	GAWTC	1 cut(s)	286
Tru1I	TTAA	3 cut(s)	20, 801, 810
Tru9I	TTAA	3 cut(s)	20, 801, 810
TscAI	CASTG	3 cut(s)	54, 189, 775
TseFI	GTSAC	1 cut(s)	614
TseI	GCWGC	4 cut(s)	10, 122, 125, 828
Tsp45I	GTSAC	1 cut(s)	614
TspDTI	ATGAA	3 cut(s)	381, 599, 642
TspGWI	ACGGA	1 cut(s)	734
TspRI	CASTG	3 cut(s)	54, 189, 775
XapI	RAATTY	2 cut(s)	198, 716
XcmI	CCANNNNNNNNNTGG	1 cut(s)	184
XmnI	GAANNNNTTC	1 cut(s)	262

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.