Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0002108

Physical Location & Seq

Genomic Coordinates Reverse (-)

11481729 .. 11486367

Gene Structure 4639 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG154600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGCATGGCCGGCCATCGCAGAACCGGCTATCGTCTTTTCAGTCGAGAATTTCAGCTCTCCTCCTCGCCATGCTCTCCACCATGGCCGTAATTTACGTCGCCGGCCGTCTGTGGCAGGATGCTGAAGATAGGGTTTATTTGATTAAGGAAATTGATAAAAGAAATAGTCAGGGTCACTCTGCTATATCTGTGGACGATACGCTTAAGATTATAGCTTGCAGGGAGCAACAGAAGAAGTTGTCCGCCGTAGAGATGGAACTGGCTGCAGCAAGGAAAGAAGGCTTTGTTCCAAAGAGCTCGTCAAAAAATGAGAAGGATGATTCTAAGAAGAAGCTTCTAGCAGTTGTAGGAATTTTCACGACGTTTGGTCGCAATAAAAATAGGGAGGCAATTCGTAAGGCGTGGATGCCTACTGGTGCAGCATTGAAAAAATTGGCAGATGAAAAGGGCATCGTTGTGCGATTTGTAATTGGAAGAAGCCCAAATCGTGGAGACAGTTTGGACAAGCAAATCGACAGTGAAAGTAGGCAGACCAAAGACTTCATTGTTCTTGATGGTCAAGTAGAGGCATATGAGGAGGGTCCAAAAAAGATGAAATCATTCTTTATTCATGCTGTAGAGAGCTGGGATGCTGAGTTTTGTGTCAAGGTCAATGATGATGTTTTTATTAATATTGATGTCCTTGGAGCAACACTAACTACTTATTTGAATAAGCCTCGTGTCTACATTGGGTGCATGAAATCAGGCGAAGTTTTCTCTGAACCGACACACAAGTGGTATGAACCAGACTGGTGGAAATTTGGCGACGCAAAATCATACCCTAGACATGCATCTGGTGAAATGTATGCCATTTCTAGAGCATTAGCTCAGTTTATATCAATAAATAGGTACCTCTGCCTCCTTCTAATATTTTCTTTGATACTATCATGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0006029 GO:0006464 GO:0006486 GO:0006493 GO:0006807 GO:0008150 GO:0008152 GO:0008378 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0010384 GO:0010404 GO:0010405 GO:0012505 GO:0016740 GO:0016757 GO:0016758 GO:0018193 GO:0018208 GO:0018258 GO:0019538 GO:0031410 GO:0031982 GO:0031984 GO:0034645 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044036 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0070085 GO:0071554 GO:0071704 GO:0097708 GO:0098791 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1990714

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4094 Galactosyl_T

Protein Analysis

310

Amino Acids

35.09

Weight (kDa)

9.19

Isoelectric Point (pI)

41.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF4094	PF13334	15 - 92	5.4e-09	Domain of unknown function (DUF4094)
Galactosyl_T	PF01762	127 - 295	7.2e-32	Galactosyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002108)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G53340 AT5G53340
fragaria_vesca	FvH4_5g03830 FvH4_5g03830 FvH4_5g03830 FvH4_5g03830 FvH4_5g03830 FvH4_5g03830 FvH4_5g03830 FvH4_7g30880 FvH4_7g30880 FvH4_7g30880 FvH4_7g30880 FvH4_7g30880
malus_domestica	MD01G1213800.v1.1 MD06G1099700.v1.1 MD07G1283500.v1.1 MD14G1119400.v1.1
prunus_persica	Prupe.2G305900_v2.0.a1 Prupe.5G113400_v2.0.a1 Prupe.5G113400_v2.0.a1
pyrus_communis	pycom01g22450 pycom06g09500 pycom07g25760
rosa_chinensis	RchiOBHm_Chr1g0379951 RchiOBHm_Chr7g0195671
rosa_laevigata	RLG00000026346
rosa_multiflora	Rmu_sc0003314.1_g000015 Rmu_sc0004184.1_g000018 Rmu_sc0016754.1_g000001 Rmu_sc0035510.1_g000001
rosa_roxburghii	Rroxscaffold_3G00260230 Rroxscaffold_4G00279830
rosa_rugosa	Rorug01G0415900 Rorug07G0025600
rosa_samantha	Rh1AG440400 Rh1BG396200 Rh1DG427000 Rh7AG153400 Rh7BG154600 Rh7CG158600 Rh7CG158700
rosa_wichuraiana	Rw1G038290 Rw7G013100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	888
AccB1I	GGYRCC	1 cut(s)	888
AccB7I	CCANNNNNTGG	1 cut(s)	488
AccI	GTMKAC	1 cut(s)	723
AciI	CCGC	1 cut(s)	243
AcoI	YGGCCR	4 cut(s)	7, 11, 84, 103
AcsI	RAATTY	3 cut(s)	48, 351, 797
AcuI	CTGAAG	1 cut(s)	144
AfaI	GTAC	1 cut(s)	890
AfiI	CCNNNNNNNGG	1 cut(s)	488
AflII	CTTAAG	1 cut(s)	203
AgsI	TTSAA	2 cut(s)	427, 709
AhdI	GACNNNNNGTC	1 cut(s)	366
AleI	CACNNNNGTG	1 cut(s)	772
AluBI	AGCT	6 cut(s)	56, 215, 297, 334, 624, 866
AluI	AGCT	6 cut(s)	56, 215, 297, 334, 624, 866
Alw21I	GWGCWC	1 cut(s)	299
Alw26I	GTCTC	1 cut(s)	486
AoxI	GGCC	4 cut(s)	7, 11, 84, 103
ApeKI	GCWGC	3 cut(s)	263, 266, 419
ApoI	RAATTY	3 cut(s)	48, 351, 797
ArsI	GACNNNNNNTTYG	2 cut(s)	284, 316
AseI	ATTAAT	1 cut(s)	669
Asp700I	GAANNNNTTC	1 cut(s)	599
Asp718I	GGTACC	1 cut(s)	888
AspS9I	GGNCC	1 cut(s)	581
AsuHPI	GGTGA	1 cut(s)	848
AvaII	GGWCC	1 cut(s)	581
BanI	GGYRCC	1 cut(s)	888
BanII	GRGCYC	1 cut(s)	299
BauI	CACGAG	1 cut(s)	717
Bbv12I	GWGCWC	1 cut(s)	299
BbvI	GCAGC	3 cut(s)	250, 278, 431
BccI	CCATC	3 cut(s)	22, 247, 548
BceAI	ACGGC	3 cut(s)	71, 90, 230
BcoDI	GTCTC	1 cut(s)	486
BfaI	CTAG	3 cut(s)	338, 822, 855
BfmI	CTRYAG	2 cut(s)	264, 615
BfrI	CTTAAG	1 cut(s)	203
BisI	GCNGC	3 cut(s)	264, 267, 420
BlsI	GCNGC	3 cut(s)	265, 268, 421
Bme18I	GGWCC	1 cut(s)	581
BmeRI	GACNNNNNGTC	1 cut(s)	366
BmgT120I	GGNCC	1 cut(s)	581
BmiI	GGNNCC	2 cut(s)	582, 890
BmsI	GCATC	5 cut(s)	109, 396, 459, 619, 839
BsaJI	CCNNGG	2 cut(s)	81, 682
Bsc4I	CCNNNNNNNGG	1 cut(s)	488
Bse118I	RCCGGY	3 cut(s)	9, 24, 101
Bse1I	ACTGG	3 cut(s)	264, 418, 794
BseDI	CCNNGG	2 cut(s)	81, 682
BseGI	GGATG	4 cut(s)	124, 322, 411, 634
BseLI	CCNNNNNNNGG	1 cut(s)	488
BseMII	CTCAG	2 cut(s)	624, 881
BseNI	ACTGG	3 cut(s)	264, 418, 794
BseRI	GAGGAG	3 cut(s)	50, 53, 590
BseX3I	CGGCCG	1 cut(s)	103
BseXI	GCAGC	3 cut(s)	250, 278, 431
BseYI	CCCAGC	1 cut(s)	624
BsgI	GTGCAG	1 cut(s)	438
Bsh1285I	CGRYCG	1 cut(s)	106
BshFI	GGCC	4 cut(s)	9, 13, 86, 105
BshNI	GGYRCC	1 cut(s)	888
BsiEI	CGRYCG	1 cut(s)	106
BsiHKAI	GWGCWC	1 cut(s)	299
BsiSI	CCGG	3 cut(s)	10, 25, 102
BslI	CCNNNNNNNGG	1 cut(s)	488
BsmAI	GTCTC	1 cut(s)	486
BsnI	GGCC	4 cut(s)	9, 13, 86, 105
Bsp1286I	GDGCHC	1 cut(s)	299
Bsp19I	CCATGG	1 cut(s)	81
BspACI	CCGC	1 cut(s)	243
BspANI	GGCC	4 cut(s)	9, 13, 86, 105
BspCNI	CTCAG	2 cut(s)	625, 880
BspLI	GGNNCC	2 cut(s)	582, 890
BspMAI	CTGCAG	1 cut(s)	268
BspT107I	GGYRCC	1 cut(s)	888
BspTI	CTTAAG	1 cut(s)	203
BsrFI	RCCGGY	3 cut(s)	9, 24, 101
BsrI	ACTGG	3 cut(s)	264, 418, 794
BssAI	RCCGGY	3 cut(s)	9, 24, 101
BssECI	CCNNGG	2 cut(s)	81, 682
BssSI	CACGAG	1 cut(s)	717
BssT1I	CCWWGG	2 cut(s)	81, 682
Bst2BI	CACGAG	1 cut(s)	717
Bst4CI	ACNGT	2 cut(s)	497, 518
BstAFI	CTTAAG	1 cut(s)	203
BstC8I	GCNNGC	3 cut(s)	11, 103, 217
BstDEI	CTNAG	3 cut(s)	324, 633, 867
BstDSI	CCRYGG	1 cut(s)	81
BstF5I	GGATG	4 cut(s)	124, 322, 411, 634
BstMAI	GTCTC	1 cut(s)	486
BstMCI	CGRYCG	1 cut(s)	106
BstMWI	GCNNNNNNNGC	2 cut(s)	10, 25
BstNSI	RCATGY	1 cut(s)	830
BstSFI	CTRYAG	2 cut(s)	264, 615
BstV1I	GCAGC	3 cut(s)	250, 278, 431
BstXI	CCANNNNNNTGG	1 cut(s)	792
BstZI	CGGCCG	1 cut(s)	103
BsuRI	GGCC	4 cut(s)	9, 13, 86, 105
BtgI	CCRYGG	1 cut(s)	81
BtsCI	GGATG	4 cut(s)	124, 322, 411, 634
BtsIMutI	CAGTG	1 cut(s)	523
Cac8I	GCNNGC	3 cut(s)	11, 103, 217
Cfr10I	RCCGGY	3 cut(s)	9, 24, 101
Cfr13I	GGNCC	1 cut(s)	581
CseI	GACGC	1 cut(s)	815
Csp6I	GTAC	1 cut(s)	889
CviAII	CATG	7 cut(s)	5, 70, 82, 611, 736, 827, 927
CviQI	GTAC	1 cut(s)	889
DdeI	CTNAG	3 cut(s)	324, 633, 867
DriI	GACNNNNNGTC	1 cut(s)	366
EaeI	YGGCCR	4 cut(s)	7, 11, 84, 103
EagI	CGGCCG	1 cut(s)	103
Eam1105I	GACNNNNNGTC	1 cut(s)	366
EciI	GGCGGA	1 cut(s)	232
Ecl136II	GAGCTC	1 cut(s)	297
EclXI	CGGCCG	1 cut(s)	103
Eco130I	CCWWGG	2 cut(s)	81, 682
Eco24I	GRGCYC	1 cut(s)	299
Eco47I	GGWCC	1 cut(s)	581
Eco52I	CGGCCG	1 cut(s)	103
Eco53kI	GAGCTC	1 cut(s)	297
Eco57I	CTGAAG	1 cut(s)	144
EcoICRI	GAGCTC	1 cut(s)	297
EcoT14I	CCWWGG	2 cut(s)	81, 682
EcoT22I	ATGCAT	2 cut(s)	6, 832
EcoT38I	GRGCYC	1 cut(s)	299
ErhI	CCWWGG	2 cut(s)	81, 682
FaeI	CATG	7 cut(s)	8, 73, 85, 614, 739, 830, 930
FatI	CATG	7 cut(s)	4, 69, 81, 610, 735, 826, 926
FauNDI	CATATG	1 cut(s)	571
FblI	GTMKAC	1 cut(s)	723
Fnu4HI	GCNGC	3 cut(s)	264, 267, 420
FokI	GGATG	4 cut(s)	131, 329, 418, 641
FriOI	GRGCYC	1 cut(s)	299
FseI	GGCCGGCC	1 cut(s)	13
Fsp4HI	GCNGC	3 cut(s)	264, 267, 420
FspBI	CTAG	3 cut(s)	338, 822, 855
GluI	GCNGC	3 cut(s)	264, 267, 420
GsaI	CCCAGC	1 cut(s)	628
HaeIII	GGCC	4 cut(s)	9, 13, 86, 105
HapII	CCGG	3 cut(s)	10, 25, 102
HgaI	GACGC	1 cut(s)	815
Hin1II	CATG	7 cut(s)	8, 73, 85, 614, 739, 830, 930
HindIII	AAGCTT	1 cut(s)	332
HinfI	GANTC	1 cut(s)	320
HpaII	CCGG	3 cut(s)	10, 25, 102
HphI	GGTGA	1 cut(s)	848
Hpy166II	GTNNAC	2 cut(s)	193, 724
Hpy188I	TCNGA	1 cut(s)	760
Hpy188III	TCNNGA	4 cut(s)	45, 358, 551, 855
Hpy8I	GTNNAC	2 cut(s)	193, 724
Hpy99I	CGWCG	3 cut(s)	101, 364, 809
HpyAV	CCTTC	3 cut(s)	272, 307, 911
HpyCH4III	ACNGT	2 cut(s)	497, 518
HpyCH4IV	ACGT	2 cut(s)	96, 362
HpyCH4V	TGCA	6 cut(s)	4, 219, 266, 419, 735, 830
HpyF10VI	GCNNNNNNNGC	2 cut(s)	10, 25
HpyF3I	CTNAG	3 cut(s)	324, 633, 867
HpySE526I	ACGT	2 cut(s)	96, 362
Hsp92II	CATG	7 cut(s)	8, 73, 85, 614, 739, 830, 930
KpnI	GGTACC	1 cut(s)	892
KroI	GCCGGC	2 cut(s)	9, 101
KroNI	GCCGGC	2 cut(s)	11, 103
LmnI	GCTCC	2 cut(s)	223, 686
Lsp1109I	GCAGC	3 cut(s)	250, 278, 431
LweI	GCATC	5 cut(s)	109, 396, 459, 619, 839
MaeI	CTAG	3 cut(s)	338, 822, 855
MaeII	ACGT	2 cut(s)	96, 362
MaeIII	GTNAC	1 cut(s)	173
MboII	GAAGA	4 cut(s)	137, 244, 340, 486
MhlI	GDGCHC	1 cut(s)	299
MluCI	AATT	8 cut(s)	48, 90, 150, 351, 390, 431, 468, 797
MnlI	CCTC	9 cut(s)	71, 74, 379, 559, 568, 571, 726, 902, 908
Mph1103I	ATGCAT	2 cut(s)	6, 832
MroNI	GCCGGC	2 cut(s)	9, 101
MroXI	GAANNNNTTC	1 cut(s)	599
MseI	TTAA	3 cut(s)	144, 204, 669
MslI	CAYNNNNRTG	2 cut(s)	455, 772
MspCI	CTTAAG	1 cut(s)	203
MspI	CCGG	3 cut(s)	10, 25, 102
MwoI	GCNNNNNNNGC	2 cut(s)	10, 25
NaeI	GCCGGC	2 cut(s)	11, 103
NcoI	CCATGG	1 cut(s)	81
NdeI	CATATG	1 cut(s)	571
NgoMIV	GCCGGC	2 cut(s)	9, 101
NlaIII	CATG	7 cut(s)	8, 73, 85, 614, 739, 830, 930
NlaIV	GGNNCC	2 cut(s)	582, 890
NmuCI	GTSAC	1 cut(s)	173
NsiI	ATGCAT	2 cut(s)	6, 832
NspI	RCATGY	1 cut(s)	830
OliI	CACNNNNGTG	1 cut(s)	772
PdiI	GCCGGC	2 cut(s)	11, 103
PdmI	GAANNNNTTC	1 cut(s)	599
PfeI	GAWTC	1 cut(s)	320
PflMI	CCANNNNNTGG	1 cut(s)	488
PkrI	GCNGC	3 cut(s)	265, 268, 421
PshBI	ATTAAT	1 cut(s)	669
Psp124BI	GAGCTC	1 cut(s)	299
PspFI	CCCAGC	1 cut(s)	624
PspN4I	GGNNCC	2 cut(s)	582, 890
PspPI	GGNCC	1 cut(s)	581
PstI	CTGCAG	1 cut(s)	268
RigI	GGCCGGCC	1 cut(s)	13
RsaI	GTAC	1 cut(s)	890
RsaNI	GTAC	1 cut(s)	889
RseI	CAYNNNNRTG	2 cut(s)	455, 772
SacI	GAGCTC	1 cut(s)	299
SaqAI	TTAA	3 cut(s)	144, 204, 669
SatI	GCNGC	3 cut(s)	264, 267, 420
Sau96I	GGNCC	1 cut(s)	581
SduI	GDGCHC	1 cut(s)	299
SfaNI	GCATC	5 cut(s)	109, 396, 459, 619, 839
SfcI	CTRYAG	2 cut(s)	264, 615
SinI	GGWCC	1 cut(s)	581
SmiMI	CAYNNNNRTG	2 cut(s)	455, 772
SmlI	CTYRAG	1 cut(s)	203
SmoI	CTYRAG	1 cut(s)	203
Sse9I	AATT	8 cut(s)	48, 90, 150, 351, 390, 431, 468, 797
SsiI	CCGC	1 cut(s)	243
SspI	AATATT	2 cut(s)	673, 909
SspMI	CTAG	3 cut(s)	338, 822, 855
SstI	GAGCTC	1 cut(s)	299
StyI	CCWWGG	2 cut(s)	81, 682
TaaI	ACNGT	2 cut(s)	497, 518
TaiI	ACGT	2 cut(s)	99, 365
TaqI	TCGA	2 cut(s)	44, 513
TasI	AATT	8 cut(s)	48, 90, 150, 351, 390, 431, 468, 797
TfiI	GAWTC	1 cut(s)	320
Tru1I	TTAA	3 cut(s)	144, 204, 669
Tru9I	TTAA	3 cut(s)	144, 204, 669
TscAI	CASTG	1 cut(s)	523
TseFI	GTSAC	1 cut(s)	173
TseI	GCWGC	3 cut(s)	263, 266, 419
Tsp45I	GTSAC	1 cut(s)	173
TspDTI	ATGAA	6 cut(s)	456, 532, 599, 608, 752, 795
TspRI	CASTG	1 cut(s)	523
Van91I	CCANNNNNTGG	1 cut(s)	488
Vha464I	CTTAAG	1 cut(s)	203
VpaK11BI	GGWCC	1 cut(s)	581
VspI	ATTAAT	1 cut(s)	669
XapI	RAATTY	3 cut(s)	48, 351, 797
XbaI	TCTAGA	1 cut(s)	854
XceI	RCATGY	1 cut(s)	830
XmiI	GTMKAC	1 cut(s)	723
XmnI	GAANNNNTTC	1 cut(s)	599
XspI	CTAG	3 cut(s)	338, 822, 855
Zsp2I	ATGCAT	2 cut(s)	6, 832

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.