Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0035510.1

Orthogroup ID

OG0002108

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1550

Gene Structure 1550 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0035510.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 667 bp

atgccgagcaaggctcctccacgtgtctccggaaaggttttccgatcccggattccgactctgctggtctcaatgttcgccagcttcgcctcaatctacgtcgccggacggttgtggcaggactcggagaacaggggttatttgattaaagagcttgataggattactgggaaggggggttctgtcatatcagtggatgatacgttgaaaatcatagcttgcagggaacaacataagaagttatcagcagttgagatggagttggctgcagccaaacaagagggttttagtctaaagcgttcaacactgggaaatggaaccaggccactggtggtgattggaattttcacaaagtttggtcgtaagaacaatagagatgcaattcgtaaggcgtggatgggaactggttctgctttgaaaaatatggagaatcagaagggagtaattgcaagatttgttattggaagaagtgcaaatcgcggggatagtttggacatagccattgacaatgaaaacaggcagaccaaagacttccttattctggatacccatctggaggcacctgaagagttctcgaagaaggctaaactgttcttcactcatggtgctgataaatgggatgctgagttttatgccaaagtcaatgatgatgtttatgtaaatattg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0006029 GO:0006464 GO:0006486 GO:0006493 GO:0006807 GO:0008150 GO:0008152 GO:0008378 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0010384 GO:0010404 GO:0010405 GO:0012505 GO:0016740 GO:0016757 GO:0016758 GO:0018193 GO:0018208 GO:0018258 GO:0019538 GO:0031410 GO:0031982 GO:0031984 GO:0034645 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044036 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0070085 GO:0071554 GO:0071704 GO:0097708 GO:0098791 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1990714

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4094 Galactosyl_T

Protein Analysis

222

Amino Acids

24.79

Weight (kDa)

9.71

Isoelectric Point (pI)

30.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002108)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G53340 AT5G53340
fragaria_vesca	FvH4_5g03830 FvH4_5g03830 FvH4_5g03830 FvH4_5g03830 FvH4_5g03830 FvH4_5g03830 FvH4_5g03830 FvH4_7g30880 FvH4_7g30880 FvH4_7g30880 FvH4_7g30880 FvH4_7g30880
malus_domestica	MD01G1213800.v1.1 MD06G1099700.v1.1 MD07G1283500.v1.1 MD14G1119400.v1.1
prunus_persica	Prupe.2G305900_v2.0.a1 Prupe.5G113400_v2.0.a1 Prupe.5G113400_v2.0.a1
pyrus_communis	pycom01g22450 pycom06g09500 pycom07g25760
rosa_chinensis	RchiOBHm_Chr1g0379951 RchiOBHm_Chr7g0195671
rosa_laevigata	RLG00000026346
rosa_multiflora	Rmu_sc0003314.1_g000015 Rmu_sc0004184.1_g000018 Rmu_sc0016754.1_g000001 Rmu_sc0035510.1_g000001
rosa_roxburghii	Rroxscaffold_3G00260230 Rroxscaffold_4G00279830
rosa_rugosa	Rorug01G0415900 Rorug07G0025600
rosa_samantha	Rh1AG440400 Rh1BG396200 Rh1DG427000 Rh7AG153400 Rh7BG154600 Rh7CG158600 Rh7CG158700
rosa_wichuraiana	Rw1G038290 Rw7G013100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	559
AccII	CGCG	1 cut(s)	480
AccIII	TCCGGA	1 cut(s)	29
AciI	CCGC	1 cut(s)	480
AclWI	GGATC	1 cut(s)	39
AcsI	RAATTY	1 cut(s)	342
AcuI	CTGAAG	1 cut(s)	585
AcvI	CACGTG	1 cut(s)	23
AfiI	CCNNNNNNNGG	2 cut(s)	541, 556
AflIII	ACRYGT	1 cut(s)	22
AgsI	TTSAA	3 cut(s)	208, 303, 418
AjnI	CCWGG	1 cut(s)	320
AloI	GAACNNNNNNTCC	2 cut(s)	163, 195
AluBI	AGCT	3 cut(s)	84, 154, 218
AluI	AGCT	3 cut(s)	84, 154, 218
Alw26I	GTCTC	2 cut(s)	31, 73
AlwI	GGATC	1 cut(s)	39
Aor13HI	TCCGGA	1 cut(s)	29
AoxI	GGCC	1 cut(s)	323
ApeKI	GCWGC	2 cut(s)	266, 269
ApoI	RAATTY	1 cut(s)	342
Asp700I	GAANNNNTTC	1 cut(s)	406
AsuC2I	CCSGG	1 cut(s)	49
AsuHPI	GGTGA	1 cut(s)	346
BanI	GGYRCC	1 cut(s)	559
BbrPI	CACGTG	1 cut(s)	23
BbvI	GCAGC	2 cut(s)	253, 281
BccI	CCATC	3 cut(s)	250, 391, 558
BciT130I	CCWGG	1 cut(s)	322
BciVI	GTATCC	1 cut(s)	538
BcnI	CCSGG	1 cut(s)	49
BcoDI	GTCTC	2 cut(s)	31, 73
BfmI	CTRYAG	1 cut(s)	267
BfuI	GTATCC	1 cut(s)	538
BisI	GCNGC	2 cut(s)	267, 270
BlsI	GCNGC	2 cut(s)	268, 271
Bme1390I	CCNGG	2 cut(s)	49, 322
BmiI	GGNNCC	3 cut(s)	15, 319, 561
BmrFI	CCNGG	2 cut(s)	49, 322
BmrI	ACTGGG	2 cut(s)	177, 317
BmsI	GCATC	2 cut(s)	367, 610
BmuI	ACTGGG	2 cut(s)	177, 317
BplI	GAGNNNNNCTC	1 cut(s)	30
BpmI	CTGGAG	1 cut(s)	575
BpuMI	CCSGG	1 cut(s)	49
BsaAI	YACGTR	1 cut(s)	23
BsaBI	GATNNNNATC	1 cut(s)	549
BsaI	GGTCTC	1 cut(s)	73
BsaWI	WCCGGW	1 cut(s)	29
Bsc4I	CCNNNNNNNGG	2 cut(s)	541, 556
Bse1I	ACTGG	4 cut(s)	172, 312, 333, 409
Bse8I	GATNNNNATC	1 cut(s)	549
BseAI	TCCGGA	1 cut(s)	29
BseBI	CCWGG	1 cut(s)	322
BseGI	GGATG	3 cut(s)	202, 402, 625
BseJI	GATNNNNATC	1 cut(s)	549
BseLI	CCNNNNNNNGG	2 cut(s)	541, 556
BseMII	CTCAG	1 cut(s)	615
BseNI	ACTGG	4 cut(s)	172, 312, 333, 409
BseRI	GAGGAG	1 cut(s)	6
BseXI	GCAGC	2 cut(s)	253, 281
Bsh1236I	CGCG	1 cut(s)	480
BshFI	GGCC	1 cut(s)	325
BshNI	GGYRCC	1 cut(s)	559
BsiSI	CCGG	3 cut(s)	30, 49, 105
BslI	CCNNNNNNNGG	2 cut(s)	541, 556
BsmAI	GTCTC	2 cut(s)	31, 73
BsnI	GGCC	1 cut(s)	325
Bso31I	GGTCTC	1 cut(s)	73
Bsp13I	TCCGGA	1 cut(s)	29
Bsp143I	GATC	1 cut(s)	44
BspACI	CCGC	1 cut(s)	480
BspANI	GGCC	1 cut(s)	325
BspCNI	CTCAG	1 cut(s)	616
BspEI	TCCGGA	1 cut(s)	29
BspFNI	CGCG	1 cut(s)	480
BspLI	GGNNCC	3 cut(s)	15, 319, 561
BspMAI	CTGCAG	1 cut(s)	271
BspPI	GGATC	1 cut(s)	39
BspT107I	GGYRCC	1 cut(s)	559
BspTNI	GGTCTC	1 cut(s)	73
BsrI	ACTGG	4 cut(s)	172, 312, 333, 409
BssMI	GATC	1 cut(s)	44
Bst2UI	CCWGG	1 cut(s)	322
Bst4CI	ACNGT	2 cut(s)	111, 591
Bst6I	CTCTTC	1 cut(s)	561
BstBAI	YACGTR	1 cut(s)	23
BstC8I	GCNNGC	2 cut(s)	82, 220
BstDEI	CTNAG	1 cut(s)	624
BstF5I	GGATG	3 cut(s)	202, 402, 625
BstFNI	CGCG	1 cut(s)	480
BstKTI	GATC	1 cut(s)	47
BstMAI	GTCTC	2 cut(s)	31, 73
BstMBI	GATC	1 cut(s)	44
BstMWI	GCNNNNNNNGC	1 cut(s)	86
BstNI	CCWGG	1 cut(s)	322
BstSCI	CCNGG	2 cut(s)	47, 320
BstSFI	CTRYAG	1 cut(s)	267
BstUI	CGCG	1 cut(s)	480
BstV1I	GCAGC	2 cut(s)	253, 281
BstXI	CCANNNNNNTGG	1 cut(s)	328
BsuI	GTATCC	1 cut(s)	538
BsuRI	GGCC	1 cut(s)	325
BtsCI	GGATG	3 cut(s)	202, 402, 625
BtsIMutI	CAGTG	3 cut(s)	198, 305, 326
Cac8I	GCNNGC	2 cut(s)	82, 220
CviAII	CATG	1 cut(s)	602
CviJI	RGCY	9 cut(s)	14, 84, 154, 218, 266, 272, 325, 500, 584
CviKI_1	RGCY	9 cut(s)	14, 84, 154, 218, 266, 272, 325, 500, 584
DdeI	CTNAG	1 cut(s)	624
DpnI	GATC	1 cut(s)	46
DpnII	GATC	1 cut(s)	44
Eam1104I	CTCTTC	1 cut(s)	561
EarI	CTCTTC	1 cut(s)	561
Eco31I	GGTCTC	1 cut(s)	73
Eco57I	CTGAAG	1 cut(s)	585
Eco72I	CACGTG	1 cut(s)	23
EcoRII	CCWGG	1 cut(s)	320
FaeI	CATG	1 cut(s)	605
FaiI	YATR	8 cut(s)	188, 215, 234, 425, 497, 603, 633, 657
FalI	AAGNNNNNCTT	2 cut(s)	519, 551
FatI	CATG	1 cut(s)	601
FauI	CCCGC	1 cut(s)	473
Fnu4HI	GCNGC	2 cut(s)	267, 270
FokI	GGATG	3 cut(s)	209, 409, 632
Fsp4HI	GCNGC	2 cut(s)	267, 270
GluI	GCNGC	2 cut(s)	267, 270
GsuI	CTGGAG	1 cut(s)	575
HaeIII	GGCC	1 cut(s)	325
HapII	CCGG	3 cut(s)	30, 49, 105
Hin1II	CATG	1 cut(s)	605
HinfI	GANTC	4 cut(s)	52, 58, 122, 430
HpaII	CCGG	3 cut(s)	30, 49, 105
HphI	GGTGA	1 cut(s)	346
Hpy188I	TCNGA	4 cut(s)	44, 57, 127, 435
Hpy188III	TCNNGA	4 cut(s)	30, 542, 554, 574
Hpy99I	CGWCG	1 cut(s)	104
HpyAV	CCTTC	3 cut(s)	166, 430, 574
HpyCH4III	ACNGT	2 cut(s)	111, 591
HpyCH4IV	ACGT	3 cut(s)	22, 99, 203
HpyCH4V	TGCA	5 cut(s)	222, 269, 380, 449, 473
HpyF10VI	GCNNNNNNNGC	1 cut(s)	86
HpyF3I	CTNAG	1 cut(s)	624
HpySE526I	ACGT	3 cut(s)	22, 99, 203
Hsp92II	CATG	1 cut(s)	605
Kpn2I	TCCGGA	1 cut(s)	29
Kzo9I	GATC	1 cut(s)	44
LmnI	GCTCC	1 cut(s)	19
Lsp1109I	GCAGC	2 cut(s)	253, 281
LweI	GCATC	2 cut(s)	367, 610
MaeII	ACGT	3 cut(s)	22, 99, 203
MalI	GATC	1 cut(s)	46
MboI	GATC	1 cut(s)	44
MboII	GAAGA	4 cut(s)	477, 578, 586, 589
MluCI	AATT	3 cut(s)	342, 381, 444
MlyI	GAGTC	2 cut(s)	52, 116
MmeI	TCCRAC	1 cut(s)	80
MnlI	CCTC	4 cut(s)	27, 100, 274, 550
MroI	TCCGGA	1 cut(s)	29
MroXI	GAANNNNTTC	1 cut(s)	406
MseI	TTAA	1 cut(s)	147
MslI	CAYNNNNRTG	1 cut(s)	191
MspI	CCGG	3 cut(s)	30, 49, 105
MspR9I	CCNGG	2 cut(s)	49, 322
MvaI	CCWGG	1 cut(s)	322
MvnI	CGCG	1 cut(s)	480
MwoI	GCNNNNNNNGC	1 cut(s)	86
NciI	CCSGG	1 cut(s)	49
NdeII	GATC	1 cut(s)	44
NlaIII	CATG	1 cut(s)	605
NlaIV	GGNNCC	3 cut(s)	15, 319, 561
NmeAIII	GCCGAG	1 cut(s)	30
PdmI	GAANNNNTTC	1 cut(s)	406
PfeI	GAWTC	2 cut(s)	52, 430
PfoI	TCCNGGA	1 cut(s)	47
PkrI	GCNGC	2 cut(s)	268, 271
PleI	GAGTC	2 cut(s)	52, 116
PmaCI	CACGTG	1 cut(s)	23
PmlI	CACGTG	1 cut(s)	23
PpsI	GAGTC	2 cut(s)	52, 116
Ppu21I	YACGTR	1 cut(s)	23
Psp6I	CCWGG	1 cut(s)	320
PspCI	CACGTG	1 cut(s)	23
PspGI	CCWGG	1 cut(s)	320
PspN4I	GGNNCC	3 cut(s)	15, 319, 561
PstI	CTGCAG	1 cut(s)	271
RseI	CAYNNNNRTG	1 cut(s)	191
SaqAI	TTAA	1 cut(s)	147
SatI	GCNGC	2 cut(s)	267, 270
Sau3AI	GATC	1 cut(s)	44
SchI	GAGTC	2 cut(s)	52, 116
ScrFI	CCNGG	2 cut(s)	49, 322
SetI	ASST	8 cut(s)	25, 39, 86, 102, 156, 206, 220, 565
SfaNI	GCATC	2 cut(s)	367, 610
SfcI	CTRYAG	1 cut(s)	267
SmiMI	CAYNNNNRTG	1 cut(s)	191
Sse9I	AATT	3 cut(s)	342, 381, 444
SsiI	CCGC	1 cut(s)	480
SspI	AATATT	1 cut(s)	664
StyD4I	CCNGG	2 cut(s)	47, 320
TaaI	ACNGT	2 cut(s)	111, 591
TaiI	ACGT	3 cut(s)	25, 102, 206
TaqI	TCGA	1 cut(s)	575
TasI	AATT	3 cut(s)	342, 381, 444
TfiI	GAWTC	2 cut(s)	52, 430
Tru1I	TTAA	1 cut(s)	147
Tru9I	TTAA	1 cut(s)	147
TscAI	CASTG	3 cut(s)	198, 312, 333
TseI	GCWGC	2 cut(s)	266, 269
TspDTI	ATGAA	1 cut(s)	525
TspRI	CASTG	3 cut(s)	198, 312, 333
XapI	RAATTY	1 cut(s)	342
XcmI	CCANNNNNNNNNTGG	1 cut(s)	328
XmnI	GAANNNNTTC	1 cut(s)	406

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.