Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002108

Physical Location & Seq

Genomic Coordinates Reverse (-)

21640809 .. 21643666

Gene Structure 2858 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G53340.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1017 bp

ATGGCGAGGAAAGGGTCGAGTATAAGATTATCGAGCTCGAGAATATCAACCCTTTTGCTCTTTATGTTTGCAACTTTTGCTTCCTTCTATGTAGCAGGCCGTTTATGGCAAGAATCTCAAACTAGGGTTCATCTAATCAATGAGCTCGATAGAGTAACCGGACAGGGGAAATCTGCTATATCAGTGGATGATACTTTGAAGATCATAGCTTGCAGGGAACAGAAGAAGACACTAGCAGCTCTTGAGATGGAATTAAGTTCAGCTAGGCAAGAAGGCTTTGTTTCAAAAAGTCCCAAACTTGCTGATGGAACTGAAACCAAGAAAAGACCGTTAGTGGTTATCGGGATAATGACAAGTTTGGGTAACAAGAAGAAGAGGGATGCAGTTCGTCAAGCATGGATGGGGACTGGTGCATCACTTAAAAAACTTGAAAGTGAAAAGGGTGTGATTGCAAGATTTGTTATTGGAAGAAGTGCAAATAAAGGGGACAGCATGGACAAGAGCATTGATACTGAAAATAGTCAAACCGATGACTTCATTATTCTCGATGATGTAGTTGAGGCACCCGAGGAAGCTTCTAAGAAGGTAAAACTGTTCTTTGCCTACGCTGCAGATAGGTGGGATGCACAGTTTTATGCAAAAGCCATCGACAATATCTACGTAAATATAGATGCTCTGGGAACTACGCTTGCAGCACATCTGGAAAACCCACGGGCTTACATCGGTTGCATGAAATCAGGCGAAGTCTTCTCAGAACCGAACCACAAATGGTATGAACCAGAGTGGTGGAAATTCGGTGACAAGAAAGCATACTTCCGGCATGCTTATGGGGAGATGTATGTTATAACGCACGCATTGGCTAGATTTGTATCGATCAATAGAGACATTCTTCATTCGTATGCTCATGATGACGTCAGCACGGGTTCATGGTTTGTGGGTCTTGATGTTAAGCATGTAGATGAAGGAAAGTTTTGCTGTTCTGCGTGGTCCTCAGAAGCCATATGCGCAGGAGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0006029 GO:0006464 GO:0006486 GO:0006493 GO:0006807 GO:0008150 GO:0008152 GO:0008378 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0010384 GO:0010404 GO:0010405 GO:0012505 GO:0016740 GO:0016757 GO:0016758 GO:0018193 GO:0018208 GO:0018258 GO:0019538 GO:0031410 GO:0031982 GO:0031984 GO:0034645 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044036 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0070085 GO:0071554 GO:0071704 GO:0097708 GO:0098791 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1990714

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4094 Galactosyl_T

Protein Analysis

338

Amino Acids

37.77

Weight (kDa)

8.43

Isoelectric Point (pI)

36.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF4094	PF13334	13 - 90	2.7e-06	Domain of unknown function (DUF4094)
Galactosyl_T	PF01762	124 - 320	2.1e-30	Galactosyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002108)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G53340 AT5G53340
fragaria_vesca	FvH4_5g03830 FvH4_5g03830 FvH4_5g03830 FvH4_5g03830 FvH4_5g03830 FvH4_5g03830 FvH4_5g03830 FvH4_7g30880 FvH4_7g30880 FvH4_7g30880 FvH4_7g30880 FvH4_7g30880
malus_domestica	MD01G1213800.v1.1 MD06G1099700.v1.1 MD07G1283500.v1.1 MD14G1119400.v1.1
prunus_persica	Prupe.2G305900_v2.0.a1 Prupe.5G113400_v2.0.a1 Prupe.5G113400_v2.0.a1
pyrus_communis	pycom01g22450 pycom06g09500 pycom07g25760
rosa_chinensis	RchiOBHm_Chr1g0379951 RchiOBHm_Chr7g0195671
rosa_laevigata	RLG00000026346
rosa_multiflora	Rmu_sc0003314.1_g000015 Rmu_sc0004184.1_g000018 Rmu_sc0016754.1_g000001 Rmu_sc0035510.1_g000001
rosa_roxburghii	Rroxscaffold_3G00260230 Rroxscaffold_4G00279830
rosa_rugosa	Rorug01G0415900 Rorug07G0025600
rosa_samantha	Rh1AG440400 Rh1BG396200 Rh1DG427000 Rh7AG153400 Rh7BG154600 Rh7CG158600 Rh7CG158700
rosa_wichuraiana	Rw1G038290 Rw7G013100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	845
AatII	GACGTC	1 cut(s)	915
Acc16I	TGCGCA	1 cut(s)	1006
AccB1I	GGYRCC	1 cut(s)	562
AcsI	RAATTY	1 cut(s)	791
AcyI	GRCGYC	1 cut(s)	912
AfiI	CCNNNNNNNGG	1 cut(s)	165
AgsI	TTSAA	3 cut(s)	199, 285, 431
AluBI	AGCT	6 cut(s)	36, 145, 209, 239, 263, 575
AluI	AGCT	6 cut(s)	36, 145, 209, 239, 263, 575
Alw21I	GWGCWC	2 cut(s)	38, 147
Alw26I	GTCTC	1 cut(s)	876
Ama87I	CYCGRG	2 cut(s)	37, 566
AoxI	GGCC	1 cut(s)	97
ApeKI	GCWGC	3 cut(s)	236, 608, 692
ApoI	RAATTY	1 cut(s)	791
AspLEI	GCGC	1 cut(s)	1007
AspS9I	GGNCC	1 cut(s)	987
AsuHPI	GGTGA	1 cut(s)	809
AvaI	CYCGRG	2 cut(s)	37, 566
AvaII	GGWCC	1 cut(s)	987
BanI	GGYRCC	1 cut(s)	562
BanII	GRGCYC	2 cut(s)	38, 147
BbsI	GAAGAC	2 cut(s)	233, 739
Bbv12I	GWGCWC	2 cut(s)	38, 147
BbvI	GCAGC	3 cut(s)	248, 595, 704
BccI	CCATC	4 cut(s)	241, 299, 394, 653
BceAI	ACGGC	1 cut(s)	84
BcoDI	GTCTC	1 cut(s)	876
BfaI	CTAG	4 cut(s)	123, 233, 264, 861
BfmI	CTRYAG	1 cut(s)	609
BisI	GCNGC	3 cut(s)	237, 609, 693
BlsI	GCNGC	3 cut(s)	238, 610, 694
Bme18I	GGWCC	1 cut(s)	987
BmeT110I	CYCGRG	2 cut(s)	37, 566
BmgT120I	GGNCC	1 cut(s)	987
BmiI	GGNNCC	1 cut(s)	564
BmsI	GCATC	4 cut(s)	370, 422, 613, 661
BpiI	GAAGAC	2 cut(s)	233, 739
BpuEI	CTTGAG	1 cut(s)	263
Bsa29I	ATCGAT	1 cut(s)	872
BsaAI	YACGTR	1 cut(s)	661
BsaBI	GATNNNNATC	1 cut(s)	868
BsaHI	GRCGYC	1 cut(s)	912
BsaJI	CCNNGG	2 cut(s)	567, 710
BsaWI	WCCGGW	1 cut(s)	158
Bsc4I	CCNNNNNNNGG	1 cut(s)	165
Bse1I	ACTGG	1 cut(s)	412
Bse8I	GATNNNNATC	1 cut(s)	868
BseCI	ATCGAT	1 cut(s)	872
BseDI	CCNNGG	2 cut(s)	567, 710
BseGI	GGATG	4 cut(s)	193, 385, 405, 628
BseJI	GATNNNNATC	1 cut(s)	868
BseLI	CCNNNNNNNGG	1 cut(s)	165
BseMII	CTCAG	2 cut(s)	765, 1005
BseNI	ACTGG	1 cut(s)	412
BseXI	GCAGC	3 cut(s)	248, 595, 704
BshFI	GGCC	1 cut(s)	99
BshNI	GGYRCC	1 cut(s)	562
BshVI	ATCGAT	1 cut(s)	872
BsiHKAI	GWGCWC	2 cut(s)	38, 147
BsiHKCI	CYCGRG	2 cut(s)	37, 566
BsiSI	CCGG	2 cut(s)	159, 817
BslFI	GGGAC	3 cut(s)	276, 418, 500
BslI	CCNNNNNNNGG	1 cut(s)	165
BsmAI	GTCTC	1 cut(s)	876
BsmFI	GGGAC	3 cut(s)	276, 418, 500
BsnI	GGCC	1 cut(s)	99
BsoBI	CYCGRG	2 cut(s)	37, 566
Bsp1286I	GDGCHC	2 cut(s)	38, 147
Bsp143I	GATC	2 cut(s)	201, 873
BspANI	GGCC	1 cut(s)	99
BspCNI	CTCAG	2 cut(s)	764, 1004
BspDI	ATCGAT	1 cut(s)	872
BspHI	TCATGA	1 cut(s)	904
BspLI	GGNNCC	1 cut(s)	564
BspMAI	CTGCAG	1 cut(s)	613
BspT107I	GGYRCC	1 cut(s)	562
BsrI	ACTGG	1 cut(s)	412
BssECI	CCNNGG	2 cut(s)	567, 710
BssMI	GATC	2 cut(s)	201, 873
BssNI	GRCGYC	1 cut(s)	912
Bst4CI	ACNGT	3 cut(s)	330, 594, 630
Bst6I	CTCTTC	1 cut(s)	368
BstACI	GRCGYC	1 cut(s)	912
BstAPI	GCANNNNNTGC	1 cut(s)	77
BstBAI	YACGTR	1 cut(s)	661
BstC8I	GCNNGC	5 cut(s)	97, 211, 690, 822, 852
BstDEI	CTNAG	3 cut(s)	579, 751, 991
BstDSI	CCRYGG	1 cut(s)	710
BstF5I	GGATG	4 cut(s)	193, 385, 405, 628
BstHHI	GCGC	1 cut(s)	1007
BstKTI	GATC	2 cut(s)	204, 876
BstMAI	GTCTC	1 cut(s)	876
BstMBI	GATC	2 cut(s)	201, 873
BstMWI	GCNNNNNNNGC	3 cut(s)	77, 608, 1004
BstNSI	RCATGY	2 cut(s)	824, 956
BstSFI	CTRYAG	1 cut(s)	609
BstSNI	TACGTA	1 cut(s)	661
BstV1I	GCAGC	3 cut(s)	248, 595, 704
BstV2I	GAAGAC	2 cut(s)	233, 739
BstXI	CCANNNNNNTGG	1 cut(s)	786
Bsu15I	ATCGAT	1 cut(s)	872
BsuRI	GGCC	1 cut(s)	99
BsuTUI	ATCGAT	1 cut(s)	872
BtgI	CCRYGG	1 cut(s)	710
BtsCI	GGATG	4 cut(s)	193, 385, 405, 628
BtsIMutI	CAGTG	1 cut(s)	189
Cac8I	GCNNGC	5 cut(s)	97, 211, 690, 822, 852
CciI	TCATGA	1 cut(s)	904
CfoI	GCGC	1 cut(s)	1007
Cfr13I	GGNCC	1 cut(s)	987
ClaI	ATCGAT	1 cut(s)	872
CviAII	CATG	7 cut(s)	396, 493, 730, 821, 905, 927, 953
DdeI	CTNAG	3 cut(s)	579, 751, 991
DpnI	GATC	2 cut(s)	203, 875
DpnII	GATC	2 cut(s)	201, 873
Eam1104I	CTCTTC	1 cut(s)	368
EarI	CTCTTC	1 cut(s)	368
Ecl136II	GAGCTC	2 cut(s)	36, 145
Eco105I	TACGTA	1 cut(s)	661
Eco24I	GRGCYC	2 cut(s)	38, 147
Eco47I	GGWCC	1 cut(s)	987
Eco53kI	GAGCTC	2 cut(s)	36, 145
Eco88I	CYCGRG	2 cut(s)	37, 566
EcoICRI	GAGCTC	2 cut(s)	36, 145
EcoT38I	GRGCYC	2 cut(s)	38, 147
FaeI	CATG	7 cut(s)	399, 496, 733, 824, 908, 930, 956
FaqI	GGGAC	3 cut(s)	276, 418, 500
FatI	CATG	7 cut(s)	395, 492, 729, 820, 904, 926, 952
FauNDI	CATATG	1 cut(s)	1001
Fnu4HI	GCNGC	3 cut(s)	237, 609, 693
FokI	GGATG	4 cut(s)	200, 392, 412, 635
FriOI	GRGCYC	2 cut(s)	38, 147
Fsp4HI	GCNGC	3 cut(s)	237, 609, 693
FspBI	CTAG	4 cut(s)	123, 233, 264, 861
FspI	TGCGCA	1 cut(s)	1006
GlaI	GCGC	1 cut(s)	1006
GluI	GCNGC	3 cut(s)	237, 609, 693
HaeIII	GGCC	1 cut(s)	99
HapII	CCGG	2 cut(s)	159, 817
HhaI	GCGC	1 cut(s)	1007
Hin1I	GRCGYC	1 cut(s)	912
Hin1II	CATG	7 cut(s)	399, 496, 733, 824, 908, 930, 956
Hin6I	GCGC	1 cut(s)	1005
HinP1I	GCGC	1 cut(s)	1005
HindIII	AAGCTT	1 cut(s)	573
HinfI	GANTC	1 cut(s)	113
HpaII	CCGG	2 cut(s)	159, 817
HphI	GGTGA	1 cut(s)	809
Hpy188I	TCNGA	2 cut(s)	754, 994
Hpy188III	TCNNGA	7 cut(s)	39, 242, 343, 545, 701, 905, 941
HpyAV	CCTTC	4 cut(s)	94, 266, 577, 956
HpyCH4III	ACNGT	3 cut(s)	330, 594, 630
HpyCH4IV	ACGT	2 cut(s)	660, 912
HpyF10VI	GCNNNNNNNGC	3 cut(s)	77, 608, 1004
HpyF3I	CTNAG	3 cut(s)	579, 751, 991
HpySE526I	ACGT	2 cut(s)	660, 912
Hsp92I	GRCGYC	1 cut(s)	912
Hsp92II	CATG	7 cut(s)	399, 496, 733, 824, 908, 930, 956
HspAI	GCGC	1 cut(s)	1005
Kzo9I	GATC	2 cut(s)	201, 873
Lsp1109I	GCAGC	3 cut(s)	248, 595, 704
LweI	GCATC	4 cut(s)	370, 422, 613, 661
MaeI	CTAG	4 cut(s)	123, 233, 264, 861
MaeII	ACGT	2 cut(s)	660, 912
MaeIII	GTNAC	3 cut(s)	154, 362, 797
MalI	GATC	2 cut(s)	203, 875
MboI	GATC	2 cut(s)	201, 873
MboII	GAAGA	8 cut(s)	211, 235, 238, 382, 385, 480, 739, 881
MhlI	GDGCHC	2 cut(s)	38, 147
MluCI	AATT	2 cut(s)	251, 791
MnlI	CCTC	4 cut(s)	369, 553, 562, 1000
MseI	TTAA	3 cut(s)	254, 420, 948
MslI	CAYNNNNRTG	3 cut(s)	825, 897, 957
MspI	CCGG	2 cut(s)	159, 817
MwoI	GCNNNNNNNGC	3 cut(s)	77, 608, 1004
NdeI	CATATG	1 cut(s)	1001
NdeII	GATC	2 cut(s)	201, 873
NlaIII	CATG	7 cut(s)	399, 496, 733, 824, 908, 930, 956
NlaIV	GGNNCC	1 cut(s)	564
NmuCI	GTSAC	1 cut(s)	797
NsbI	TGCGCA	1 cut(s)	1006
NspI	RCATGY	2 cut(s)	824, 956
PaeI	GCATGC	1 cut(s)	824
PaeR7I	CTCGAG	1 cut(s)	37
PagI	TCATGA	1 cut(s)	904
PfeI	GAWTC	1 cut(s)	113
PkrI	GCNGC	3 cut(s)	238, 610, 694
Ppu21I	YACGTR	1 cut(s)	661
PsiI	TTATAA	1 cut(s)	845
Psp124BI	GAGCTC	2 cut(s)	38, 147
PspN4I	GGNNCC	1 cut(s)	564
PspPI	GGNCC	1 cut(s)	987
PstI	CTGCAG	1 cut(s)	613
RseI	CAYNNNNRTG	3 cut(s)	825, 897, 957
SacI	GAGCTC	2 cut(s)	38, 147
SaqAI	TTAA	3 cut(s)	254, 420, 948
SatI	GCNGC	3 cut(s)	237, 609, 693
Sau3AI	GATC	2 cut(s)	201, 873
Sau96I	GGNCC	1 cut(s)	987
SduI	GDGCHC	2 cut(s)	38, 147
SfaNI	GCATC	4 cut(s)	370, 422, 613, 661
SfcI	CTRYAG	1 cut(s)	609
Sfr274I	CTCGAG	1 cut(s)	37
SinI	GGWCC	1 cut(s)	987
SlaI	CTCGAG	1 cut(s)	37
SmiMI	CAYNNNNRTG	3 cut(s)	825, 897, 957
SmlI	CTYRAG	2 cut(s)	37, 242
SmoI	CTYRAG	2 cut(s)	37, 242
SnaBI	TACGTA	1 cut(s)	661
SphI	GCATGC	1 cut(s)	824
Sse9I	AATT	2 cut(s)	251, 791
SspMI	CTAG	4 cut(s)	123, 233, 264, 861
SstI	GAGCTC	2 cut(s)	38, 147
TaaI	ACNGT	3 cut(s)	330, 594, 630
TaiI	ACGT	2 cut(s)	663, 915
TaqI	TCGA	7 cut(s)	17, 32, 38, 147, 546, 648, 872
TasI	AATT	2 cut(s)	251, 791
TfiI	GAWTC	1 cut(s)	113
Tru1I	TTAA	3 cut(s)	254, 420, 948
Tru9I	TTAA	3 cut(s)	254, 420, 948
TscAI	CASTG	1 cut(s)	189
TseFI	GTSAC	1 cut(s)	797
TseI	GCWGC	3 cut(s)	236, 608, 692
Tsp45I	GTSAC	1 cut(s)	797
TspDTI	ATGAA	7 cut(s)	119, 526, 746, 789, 881, 915, 975
TspRI	CASTG	1 cut(s)	189
VpaK11BI	GGWCC	1 cut(s)	987
XapI	RAATTY	1 cut(s)	791
XceI	RCATGY	2 cut(s)	824, 956
XhoI	CTCGAG	1 cut(s)	37
XspI	CTAG	4 cut(s)	123, 233, 264, 861
ZraI	GACGTC	1 cut(s)	913

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.