Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0002108

Physical Location & Seq

Genomic Coordinates Forward (+)

22388995 .. 22393246

Gene Structure 4252 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g30880.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

ATGCACAGCAAGGCTCCACGTGTCTCCGGCAATGTTTTCCGGTCACGGATTCCGACTCTGCTGGTCTCAATGTTCGCCACCTTCGCATCAATCTACGTCGCCGGAAGGTTGTGGCAGGATTCGGAGAACAGGGTTTATTTGATCAAAGAGCTTGATAGGATCACTGGGCAGGGGGGATCTGTCATATCAGTGGATGATACATTGAAAATCATAGCTTGCAGGGAACAACATAAGAAGTTATCAGCAGTTGAGACGGAGTTGGCTGCAGCCAAACAAGAGGGTTTTAGTGTACAGCGTTCGACACTGAAAAATGGAACCAGGCCACTGTTGGTGATTGGAATTTTCACAAAGTTTGGTCGTAAGAACAATAGAGATGCAATTCGTAAGGCGTGGATGGGAACTGGTTCTGCTTTGAAACATATGGAGGACCGGAAGGGAATAATTGCAAGATTTGTTATTGGAAGAAGTGCAAATCACGGTGACAGTTTGGACATAACCATTGACAATGAAAACAGGCAGACCAAAGACTTCCTTATTCTTGATACCCATCTGGAGGCACCTGAAGGGGTCTCGCAGAAGGCTAAACTGTTCTTCGCTCATGTTGCTGATAAATGGGATGCTGAGTTTTATGCCAAAGTCAATGATGATGTTTATGTAAATATTGATGTTCTGGGAGCTACACTTGCAACTCATTTAGACAAGCCTCGTATTTATATTGGGTGCATGAAATCAGGCGAAGTTTTCTCTGAGCCGAGTCAAAATTGGTATGAACCAGAATGGTGGAAGTTTGGTGATAAAAAATCATATTTTCGCCATGCTTCGGGTGAGATGTATGTCATTTCTCAAGCTCTGGCCAAATTTATTTCAATAAATAAAGATATTCTCCGTACCTACGCCCATGATGATGTCAGTGTTGGATCTTGGTTTATTGGGCTTGATGTTAAACATCTTAGTGACGCCAAGTTTTGCTGCTCCTCTTGGAAGGGAGGAGCCATTTGTGCTGGTGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0006029 GO:0006464 GO:0006486 GO:0006493 GO:0006807 GO:0008150 GO:0008152 GO:0008378 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0010384 GO:0010404 GO:0010405 GO:0012505 GO:0016740 GO:0016757 GO:0016758 GO:0018193 GO:0018208 GO:0018258 GO:0019538 GO:0031410 GO:0031982 GO:0031984 GO:0034645 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044036 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0070085 GO:0071554 GO:0071704 GO:0097708 GO:0098791 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1990714

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4094 Galactosyl_T

Protein Analysis

337

Amino Acids

37.68

Weight (kDa)

9.02

Isoelectric Point (pI)

30.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Galactosyl_T	PF01762	123 - 259	7.7e-22	Galactosyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002108)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G53340 AT5G53340
fragaria_vesca	FvH4_5g03830 FvH4_5g03830 FvH4_5g03830 FvH4_5g03830 FvH4_5g03830 FvH4_5g03830 FvH4_5g03830 FvH4_7g30880 FvH4_7g30880 FvH4_7g30880 FvH4_7g30880 FvH4_7g30880
malus_domestica	MD01G1213800.v1.1 MD06G1099700.v1.1 MD07G1283500.v1.1 MD14G1119400.v1.1
prunus_persica	Prupe.2G305900_v2.0.a1 Prupe.5G113400_v2.0.a1 Prupe.5G113400_v2.0.a1
pyrus_communis	pycom01g22450 pycom06g09500 pycom07g25760
rosa_chinensis	RchiOBHm_Chr1g0379951 RchiOBHm_Chr7g0195671
rosa_laevigata	RLG00000026346
rosa_multiflora	Rmu_sc0003314.1_g000015 Rmu_sc0004184.1_g000018 Rmu_sc0016754.1_g000001 Rmu_sc0035510.1_g000001
rosa_roxburghii	Rroxscaffold_3G00260230 Rroxscaffold_4G00279830
rosa_rugosa	Rorug01G0415900 Rorug07G0025600
rosa_samantha	Rh1AG440400 Rh1BG396200 Rh1DG427000 Rh7AG153400 Rh7BG154600 Rh7CG158600 Rh7CG158700
rosa_wichuraiana	Rw1G038290 Rw7G013100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	556
AclWI	GGATC	3 cut(s)	167, 184, 925
AcoI	YGGCCR	1 cut(s)	852
AcsI	RAATTY	2 cut(s)	339, 857
AcuI	CTGAAG	1 cut(s)	582
AcvI	CACGTG	1 cut(s)	20
AcyI	GRCGYC	1 cut(s)	957
AfaI	GTAC	2 cut(s)	291, 889
AfiI	CCNNNNNNNGG	2 cut(s)	553, 820
AflIII	ACRYGT	1 cut(s)	19
AgsI	TTSAA	3 cut(s)	205, 415, 867
AjnI	CCWGG	1 cut(s)	317
AluBI	AGCT	4 cut(s)	151, 215, 677, 848
AluI	AGCT	4 cut(s)	151, 215, 677, 848
Alw26I	GTCTC	4 cut(s)	28, 70, 245, 574
AlwI	GGATC	3 cut(s)	167, 184, 925
AoxI	GGCC	2 cut(s)	320, 852
ApeKI	GCWGC	3 cut(s)	263, 266, 969
ApoI	RAATTY	2 cut(s)	339, 857
Asp700I	GAANNNNTTC	1 cut(s)	403
AspS9I	GGNCC	1 cut(s)	427
AsuHPI	GGTGA	4 cut(s)	343, 491, 803, 836
AvaII	GGWCC	1 cut(s)	427
BalI	TGGCCA	1 cut(s)	854
BanI	GGYRCC	1 cut(s)	556
BbrPI	CACGTG	1 cut(s)	20
BbvI	GCAGC	3 cut(s)	250, 278, 956
BccI	CCATC	2 cut(s)	388, 555
BciT130I	CCWGG	1 cut(s)	319
BclI	TGATCA	1 cut(s)	141
BcoDI	GTCTC	4 cut(s)	28, 70, 245, 574
BfmI	CTRYAG	1 cut(s)	264
BisI	GCNGC	3 cut(s)	264, 267, 970
BlsI	GCNGC	3 cut(s)	265, 268, 971
Bme1390I	CCNGG	1 cut(s)	319
Bme18I	GGWCC	1 cut(s)	427
BmgT120I	GGNCC	1 cut(s)	427
BmiI	GGNNCC	4 cut(s)	15, 316, 558, 991
BmrFI	CCNGG	1 cut(s)	319
BmrI	ACTGGG	1 cut(s)	174
BmsI	GCATC	3 cut(s)	95, 364, 607
BmuI	ACTGGG	1 cut(s)	174
BpmI	CTGGAG	1 cut(s)	572
BpuEI	CTTGAG	1 cut(s)	828
BsaAI	YACGTR	1 cut(s)	20
BsaBI	GATNNNNATC	1 cut(s)	546
BsaHI	GRCGYC	1 cut(s)	957
BsaI	GGTCTC	2 cut(s)	70, 574
BsaWI	WCCGGW	2 cut(s)	39, 429
Bsc4I	CCNNNNNNNGG	2 cut(s)	553, 820
Bse1I	ACTGG	2 cut(s)	169, 406
Bse3DI	GCAATG	1 cut(s)	37
Bse8I	GATNNNNATC	1 cut(s)	546
BseBI	CCWGG	1 cut(s)	319
BseGI	GGATG	3 cut(s)	199, 399, 622
BseJI	GATNNNNATC	1 cut(s)	546
BseLI	CCNNNNNNNGG	2 cut(s)	553, 820
BseMI	GCAATG	1 cut(s)	37
BseMII	CTCAG	2 cut(s)	612, 738
BseNI	ACTGG	2 cut(s)	169, 406
BseRI	GAGGAG	2 cut(s)	964, 1002
BseXI	GCAGC	3 cut(s)	250, 278, 956
BshFI	GGCC	2 cut(s)	322, 854
BshNI	GGYRCC	1 cut(s)	556
BsiSI	CCGG	4 cut(s)	27, 40, 102, 430
BslI	CCNNNNNNNGG	2 cut(s)	553, 820
BsmAI	GTCTC	4 cut(s)	28, 70, 245, 574
BsmBI	CGTCTC	1 cut(s)	245
BsnI	GGCC	2 cut(s)	322, 854
Bso31I	GGTCTC	2 cut(s)	70, 574
Bsp1407I	TGTACA	1 cut(s)	289
Bsp143I	GATC	4 cut(s)	141, 159, 176, 917
BspANI	GGCC	2 cut(s)	322, 854
BspCNI	CTCAG	2 cut(s)	613, 739
BspLI	GGNNCC	4 cut(s)	15, 316, 558, 991
BspMAI	CTGCAG	1 cut(s)	268
BspPI	GGATC	3 cut(s)	167, 184, 925
BspT107I	GGYRCC	1 cut(s)	556
BspTNI	GGTCTC	2 cut(s)	70, 574
BsrDI	GCAATG	1 cut(s)	37
BsrGI	TGTACA	1 cut(s)	289
BsrI	ACTGG	2 cut(s)	169, 406
BssMI	GATC	4 cut(s)	141, 159, 176, 917
BssNI	GRCGYC	1 cut(s)	957
Bst2UI	CCWGG	1 cut(s)	319
Bst4CI	ACNGT	4 cut(s)	327, 479, 485, 588
BstACI	GRCGYC	1 cut(s)	957
BstAUI	TGTACA	1 cut(s)	289
BstBAI	YACGTR	1 cut(s)	20
BstC8I	GCNNGC	1 cut(s)	217
BstDEI	CTNAG	3 cut(s)	621, 747, 950
BstF5I	GGATG	3 cut(s)	199, 399, 622
BstKTI	GATC	4 cut(s)	144, 162, 179, 920
BstMAI	GTCTC	4 cut(s)	28, 70, 245, 574
BstMBI	GATC	4 cut(s)	141, 159, 176, 917
BstMWI	GCNNNNNNNGC	4 cut(s)	83, 602, 683, 998
BstNI	CCWGG	1 cut(s)	319
BstSCI	CCNGG	1 cut(s)	317
BstSFI	CTRYAG	1 cut(s)	264
BstV1I	GCAGC	3 cut(s)	250, 278, 956
BstX2I	RGATCY	2 cut(s)	176, 917
BstXI	CCANNNNNNTGG	1 cut(s)	780
BstYI	RGATCY	2 cut(s)	176, 917
BsuRI	GGCC	2 cut(s)	322, 854
BtsCI	GGATG	3 cut(s)	199, 399, 622
BtsIMutI	CAGTG	5 cut(s)	162, 195, 302, 323, 916
Cac8I	GCNNGC	1 cut(s)	217
Cfr13I	GGNCC	1 cut(s)	427
CseI	GACGC	1 cut(s)	965
Csp6I	GTAC	2 cut(s)	290, 888
CviAII	CATG	4 cut(s)	599, 724, 815, 899
CviQI	GTAC	2 cut(s)	290, 888
DdeI	CTNAG	3 cut(s)	621, 747, 950
DpnI	GATC	4 cut(s)	143, 161, 178, 919
DpnII	GATC	4 cut(s)	141, 159, 176, 917
EaeI	YGGCCR	1 cut(s)	852
Eco31I	GGTCTC	2 cut(s)	70, 574
Eco47I	GGWCC	1 cut(s)	427
Eco57I	CTGAAG	1 cut(s)	582
Eco72I	CACGTG	1 cut(s)	20
EcoRII	CCWGG	1 cut(s)	317
Esp3I	CGTCTC	1 cut(s)	245
FaeI	CATG	4 cut(s)	602, 727, 818, 902
FalI	AAGNNNNNCTT	2 cut(s)	516, 548
FatI	CATG	4 cut(s)	598, 723, 814, 898
FauNDI	CATATG	1 cut(s)	420
FbaI	TGATCA	1 cut(s)	141
Fnu4HI	GCNGC	3 cut(s)	264, 267, 970
FokI	GGATG	3 cut(s)	206, 406, 629
Fsp4HI	GCNGC	3 cut(s)	264, 267, 970
GluI	GCNGC	3 cut(s)	264, 267, 970
GsuI	CTGGAG	1 cut(s)	572
HaeIII	GGCC	2 cut(s)	322, 854
HapII	CCGG	4 cut(s)	27, 40, 102, 430
HgaI	GACGC	1 cut(s)	965
Hin1I	GRCGYC	1 cut(s)	957
Hin1II	CATG	4 cut(s)	602, 727, 818, 902
HinfI	GANTC	4 cut(s)	49, 55, 119, 754
HpaII	CCGG	4 cut(s)	27, 40, 102, 430
HphI	GGTGA	4 cut(s)	343, 491, 803, 836
Hpy166II	GTNNAC	1 cut(s)	290
Hpy188I	TCNGA	3 cut(s)	54, 124, 748
Hpy188III	TCNNGA	2 cut(s)	539, 551
Hpy8I	GTNNAC	1 cut(s)	290
Hpy99I	CGWCG	1 cut(s)	101
HpyAV	CCTTC	6 cut(s)	91, 99, 427, 557, 571, 976
HpyCH4III	ACNGT	4 cut(s)	327, 479, 485, 588
HpyCH4IV	ACGT	2 cut(s)	19, 96
HpyCH4V	TGCA	8 cut(s)	4, 219, 266, 377, 446, 470, 686, 723
HpyF10VI	GCNNNNNNNGC	4 cut(s)	83, 602, 683, 998
HpyF3I	CTNAG	3 cut(s)	621, 747, 950
HpySE526I	ACGT	2 cut(s)	19, 96
Hsp92I	GRCGYC	1 cut(s)	957
Hsp92II	CATG	4 cut(s)	602, 727, 818, 902
Ksp22I	TGATCA	1 cut(s)	141
Kzo9I	GATC	4 cut(s)	141, 159, 176, 917
LmnI	GCTCC	4 cut(s)	19, 674, 977, 989
Lsp1109I	GCAGC	3 cut(s)	250, 278, 956
LweI	GCATC	3 cut(s)	95, 364, 607
MaeII	ACGT	2 cut(s)	19, 96
MaeIII	GTNAC	3 cut(s)	42, 479, 953
MalI	GATC	4 cut(s)	143, 161, 178, 919
MboI	GATC	4 cut(s)	141, 159, 176, 917
MboII	GAAGA	2 cut(s)	474, 583
MflI	RGATCY	2 cut(s)	176, 917
MlsI	TGGCCA	1 cut(s)	854
MluCI	AATT	5 cut(s)	339, 378, 441, 760, 857
MluNI	TGGCCA	1 cut(s)	854
MlyI	GAGTC	2 cut(s)	49, 763
MmeI	TCCRAC	2 cut(s)	77, 895
MnlI	CCTC	6 cut(s)	271, 418, 547, 714, 980, 985
Mox20I	TGGCCA	1 cut(s)	854
MroXI	GAANNNNTTC	1 cut(s)	403
MscI	TGGCCA	1 cut(s)	854
MseI	TTAA	1 cut(s)	942
MslI	CAYNNNNRTG	3 cut(s)	188, 903, 951
Msp20I	TGGCCA	1 cut(s)	854
MspI	CCGG	4 cut(s)	27, 40, 102, 430
MspR9I	CCNGG	1 cut(s)	319
MvaI	CCWGG	1 cut(s)	319
MwoI	GCNNNNNNNGC	4 cut(s)	83, 602, 683, 998
NdeI	CATATG	1 cut(s)	420
NdeII	GATC	4 cut(s)	141, 159, 176, 917
NlaIII	CATG	4 cut(s)	602, 727, 818, 902
NlaIV	GGNNCC	4 cut(s)	15, 316, 558, 991
NmeAIII	GCCGAG	1 cut(s)	777
NmuCI	GTSAC	3 cut(s)	42, 479, 953
PdmI	GAANNNNTTC	1 cut(s)	403
PfeI	GAWTC	2 cut(s)	49, 119
PkrI	GCNGC	3 cut(s)	265, 268, 971
PleI	GAGTC	2 cut(s)	49, 762
PmaCI	CACGTG	1 cut(s)	20
PmlI	CACGTG	1 cut(s)	20
PpsI	GAGTC	2 cut(s)	49, 762
Ppu21I	YACGTR	1 cut(s)	20
Psp6I	CCWGG	1 cut(s)	317
PspCI	CACGTG	1 cut(s)	20
PspGI	CCWGG	1 cut(s)	317
PspN4I	GGNNCC	4 cut(s)	15, 316, 558, 991
PspPI	GGNCC	1 cut(s)	427
PstI	CTGCAG	1 cut(s)	268
PsuI	RGATCY	2 cut(s)	176, 917
RsaI	GTAC	2 cut(s)	291, 889
RsaNI	GTAC	2 cut(s)	290, 888
RseI	CAYNNNNRTG	3 cut(s)	188, 903, 951
SaqAI	TTAA	1 cut(s)	942
SatI	GCNGC	3 cut(s)	264, 267, 970
Sau3AI	GATC	4 cut(s)	141, 159, 176, 917
Sau96I	GGNCC	1 cut(s)	427
SchI	GAGTC	2 cut(s)	49, 763
ScrFI	CCNGG	1 cut(s)	319
SfaNI	GCATC	3 cut(s)	95, 364, 607
SfcI	CTRYAG	1 cut(s)	264
SinI	GGWCC	1 cut(s)	427
SmiMI	CAYNNNNRTG	3 cut(s)	188, 903, 951
SmlI	CTYRAG	1 cut(s)	843
SmoI	CTYRAG	1 cut(s)	843
Sse9I	AATT	5 cut(s)	339, 378, 441, 760, 857
SspI	AATATT	1 cut(s)	661
StyD4I	CCNGG	1 cut(s)	317
TaaI	ACNGT	4 cut(s)	327, 479, 485, 588
TaiI	ACGT	2 cut(s)	22, 99
TaqI	TCGA	1 cut(s)	299
TasI	AATT	5 cut(s)	339, 378, 441, 760, 857
TatI	WGTACW	1 cut(s)	289
TfiI	GAWTC	2 cut(s)	49, 119
Tru1I	TTAA	1 cut(s)	942
Tru9I	TTAA	1 cut(s)	942
TscAI	CASTG	5 cut(s)	169, 195, 309, 330, 916
TseFI	GTSAC	3 cut(s)	42, 479, 953
TseI	GCWGC	3 cut(s)	263, 266, 969
Tsp45I	GTSAC	3 cut(s)	42, 479, 953
TspDTI	ATGAA	3 cut(s)	522, 740, 783
TspGWI	ACGGA	3 cut(s)	61, 269, 875
TspRI	CASTG	5 cut(s)	169, 195, 309, 330, 916
VpaK11BI	GGWCC	1 cut(s)	427
XapI	RAATTY	2 cut(s)	339, 857
XcmI	CCANNNNNNNNNTGG	1 cut(s)	325
XmnI	GAANNNNTTC	1 cut(s)	403

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.