Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0002108

Physical Location & Seq

Genomic Coordinates Forward (+)

14817501 .. 14820976

Gene Structure 3476 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g09500.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1029 bp

ATGCATAGCCGGCCGTCGCACAACCGGCTATCCGGCTCGGCTTTTCACTCTCGGATTTCAGCTCTCTTGCTCGCCATGGTCTCCACCATGGCCGCCATCTACGTCGCCAGCCGATTGTGGCAGGATGCTGCCGATAGGGTTTATTTGATTCAGGAGCTTGATAAAAGAAATGGTCAGGGTCAATCTGCTATAGCCGTAGACGACACACTTAAAATTATAGATTGCAGGGAGCAACAGAAGCAGTTGTCTGCCCTTGAGATGCAACTGGCTGGGGCAAGACAGGAAGGTTTCGTTCCAAAGAGCTTGTCGAAAAATGAGGGGGCTCATTCTAAGAAGAAGCTTTTAGCTGTTATAGGAATTATTACAACATTTGGCCGCAAGAAGAATAGGGAGGCAATTCGTAAGGCGTGGATGCCGACAGGTGAAGCTCTAAAAAGATTGGCAGATGAAAAGGGCATCATTGTGCGATTTGTAATTGGAAGAAGCCCAAATCGTGGAGACAGTTTGGACAAGGAAATAGACAAGGAAAATGACCAGACCAACGACTTCATTATTCTGGATGATCAAGTGGAGGCATCTGAGGAGCGACCAAAAAAGACAAAATCATTCTATATTCATGCTGTAGAGAACTGGGATGCTGAGTTTTATGTTAAGGTCAATGATGATGTTTATGTTAATCTTGATGTCCTGGGAGCAACTCTAACTACTTATATAGATAAGCCTCGTGTCTATATTGGGTGCATGAAATCAGGCGAAGTCTTCTCTGAACCAACACACAAGTGGTATGAGCCAGACTGGTGGAAATTTGGTGATGCAAAATCATACTTTAGACATGCTTCTGGTGAATTGTATGCCATTTCTAGAGCCTTAGCTCAGTTTATATCAATAAACAGGTCTATACTTCGTGCTTATGCTCATGACGATGTTAGTGCTGGATCATGGTTTATTGGGCTTGATGTGAAGCACATTGATGAACGGAAATTTTGCTGCTCCTCTTGGATGCCAGGAGCAATATGTACAGCTGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0006029 GO:0006464 GO:0006486 GO:0006493 GO:0006807 GO:0008150 GO:0008152 GO:0008378 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0010384 GO:0010404 GO:0010405 GO:0012505 GO:0016740 GO:0016757 GO:0016758 GO:0018193 GO:0018208 GO:0018258 GO:0019538 GO:0031410 GO:0031982 GO:0031984 GO:0034645 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044036 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0070085 GO:0071554 GO:0071704 GO:0097708 GO:0098791 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1990714

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4094 Galactosyl_T

Protein Analysis

343

Amino Acids

38.67

Weight (kDa)

8.44

Isoelectric Point (pI)

37.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002108)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G53340 AT5G53340
fragaria_vesca	FvH4_5g03830 FvH4_5g03830 FvH4_5g03830 FvH4_5g03830 FvH4_5g03830 FvH4_5g03830 FvH4_5g03830 FvH4_7g30880 FvH4_7g30880 FvH4_7g30880 FvH4_7g30880 FvH4_7g30880
malus_domestica	MD01G1213800.v1.1 MD06G1099700.v1.1 MD07G1283500.v1.1 MD14G1119400.v1.1
prunus_persica	Prupe.2G305900_v2.0.a1 Prupe.5G113400_v2.0.a1 Prupe.5G113400_v2.0.a1
pyrus_communis	pycom01g22450 pycom06g09500 pycom07g25760
rosa_chinensis	RchiOBHm_Chr1g0379951 RchiOBHm_Chr7g0195671
rosa_laevigata	RLG00000026346
rosa_multiflora	Rmu_sc0003314.1_g000015 Rmu_sc0004184.1_g000018 Rmu_sc0016754.1_g000001 Rmu_sc0035510.1_g000001
rosa_roxburghii	Rroxscaffold_3G00260230 Rroxscaffold_4G00279830
rosa_rugosa	Rorug01G0415900 Rorug07G0025600
rosa_samantha	Rh1AG440400 Rh1BG396200 Rh1DG427000 Rh7AG153400 Rh7BG154600 Rh7CG158600 Rh7CG158700
rosa_wichuraiana	Rw1G038290 Rw7G013100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	494
AccI	GTMKAC	1 cut(s)	198
AciI	CCGC	2 cut(s)	93, 376
AclWI	GGATC	1 cut(s)	943
AcoI	YGGCCR	3 cut(s)	11, 90, 373
AcsI	RAATTY	2 cut(s)	803, 980
AfaI	GTAC	1 cut(s)	1018
AfiI	CCNNNNNNNGG	1 cut(s)	494
AjnI	CCWGG	2 cut(s)	687, 1003
AleI	CACNNNNGTG	1 cut(s)	778
AluBI	AGCT	8 cut(s)	62, 157, 303, 340, 347, 428, 872, 1022
AluI	AGCT	8 cut(s)	62, 157, 303, 340, 347, 428, 872, 1022
Alw26I	GTCTC	2 cut(s)	85, 492
AlwI	GGATC	1 cut(s)	943
AoxI	GGCC	3 cut(s)	11, 90, 373
ApeKI	GCWGC	2 cut(s)	128, 987
ApoI	RAATTY	2 cut(s)	803, 980
ArsI	GACNNNNNNTTYG	2 cut(s)	290, 322
AsuHPI	GGTGA	3 cut(s)	434, 821, 854
BanII	GRGCYC	1 cut(s)	325
BauI	CACGAG	1 cut(s)	723
BbsI	GAAGAC	1 cut(s)	751
BbvI	GCAGC	2 cut(s)	115, 974
BccI	CCATC	1 cut(s)	104
BceAI	ACGGC	1 cut(s)	179
BcgI	CGANNNNNNTGC	2 cut(s)	911, 945
BciT130I	CCWGG	2 cut(s)	689, 1005
BclI	TGATCA	1 cut(s)	562
BcoDI	GTCTC	2 cut(s)	85, 492
BfaI	CTAG	1 cut(s)	861
BfmI	CTRYAG	2 cut(s)	189, 621
BisI	GCNGC	4 cut(s)	93, 129, 376, 988
BlsI	GCNGC	4 cut(s)	94, 130, 377, 989
Bme1390I	CCNGG	2 cut(s)	689, 1005
BmrFI	CCNGG	2 cut(s)	689, 1005
BmrI	ACTGGG	1 cut(s)	640
BmsI	GCATC	8 cut(s)	115, 249, 402, 465, 584, 625, 802, 990
BmuI	ACTGGG	1 cut(s)	640
BpiI	GAAGAC	1 cut(s)	751
Bpu10I	CCTNAGC	1 cut(s)	868
BpuEI	CTTGAG	1 cut(s)	275
BsaI	GGTCTC	1 cut(s)	85
BsaJI	CCNNGG	3 cut(s)	75, 87, 688
Bsc4I	CCNNNNNNNGG	1 cut(s)	494
Bse118I	RCCGGY	2 cut(s)	9, 24
Bse1I	ACTGG	3 cut(s)	270, 635, 800
BseBI	CCWGG	2 cut(s)	689, 1005
BseDI	CCNNGG	3 cut(s)	75, 87, 688
BseGI	GGATG	5 cut(s)	130, 417, 565, 640, 1005
BseLI	CCNNNNNNNGG	1 cut(s)	494
BseMII	CTCAG	3 cut(s)	570, 630, 887
BseNI	ACTGG	3 cut(s)	270, 635, 800
BseRI	GAGGAG	2 cut(s)	596, 982
BseX3I	CGGCCG	1 cut(s)	11
BseXI	GCAGC	2 cut(s)	115, 974
BseYI	CCCAGC	1 cut(s)	269
Bsh1285I	CGRYCG	1 cut(s)	14
BshFI	GGCC	3 cut(s)	13, 92, 375
BsiEI	CGRYCG	1 cut(s)	14
BsiSI	CCGG	3 cut(s)	10, 25, 33
BslI	CCNNNNNNNGG	1 cut(s)	494
BsmAI	GTCTC	2 cut(s)	85, 492
BsnI	GGCC	3 cut(s)	13, 92, 375
Bso31I	GGTCTC	1 cut(s)	85
Bsp1286I	GDGCHC	1 cut(s)	325
Bsp1407I	TGTACA	1 cut(s)	1016
Bsp143I	GATC	2 cut(s)	562, 935
Bsp19I	CCATGG	2 cut(s)	75, 87
BspACI	CCGC	2 cut(s)	93, 376
BspANI	GGCC	3 cut(s)	13, 92, 375
BspCNI	CTCAG	3 cut(s)	571, 631, 886
BspHI	TCATGA	1 cut(s)	916
BspPI	GGATC	1 cut(s)	943
BspTNI	GGTCTC	1 cut(s)	85
BsrFI	RCCGGY	2 cut(s)	9, 24
BsrGI	TGTACA	1 cut(s)	1016
BsrI	ACTGG	3 cut(s)	270, 635, 800
BssAI	RCCGGY	2 cut(s)	9, 24
BssECI	CCNNGG	3 cut(s)	75, 87, 688
BssMI	GATC	2 cut(s)	562, 935
BssSI	CACGAG	1 cut(s)	723
BssT1I	CCWWGG	2 cut(s)	75, 87
Bst2BI	CACGAG	1 cut(s)	723
Bst2UI	CCWGG	2 cut(s)	689, 1005
Bst4CI	ACNGT	1 cut(s)	503
BstAUI	TGTACA	1 cut(s)	1016
BstC8I	GCNNGC	3 cut(s)	11, 72, 109
BstDEI	CTNAG	5 cut(s)	330, 579, 639, 868, 873
BstDSI	CCRYGG	2 cut(s)	75, 87
BstF5I	GGATG	5 cut(s)	130, 417, 565, 640, 1005
BstKTI	GATC	2 cut(s)	565, 938
BstMAI	GTCTC	2 cut(s)	85, 492
BstMBI	GATC	2 cut(s)	562, 935
BstMCI	CGRYCG	1 cut(s)	14
BstMWI	GCNNNNNNNGC	3 cut(s)	10, 25, 238
BstNI	CCWGG	2 cut(s)	689, 1005
BstNSI	RCATGY	1 cut(s)	836
BstSCI	CCNGG	2 cut(s)	687, 1003
BstSFI	CTRYAG	2 cut(s)	189, 621
BstV1I	GCAGC	2 cut(s)	115, 974
BstV2I	GAAGAC	1 cut(s)	751
BstXI	CCANNNNNNTGG	1 cut(s)	798
BstZI	CGGCCG	1 cut(s)	11
BsuRI	GGCC	3 cut(s)	13, 92, 375
BtgI	CCRYGG	2 cut(s)	75, 87
BtsCI	GGATG	5 cut(s)	130, 417, 565, 640, 1005
Cac8I	GCNNGC	3 cut(s)	11, 72, 109
CciI	TCATGA	1 cut(s)	916
Cfr10I	RCCGGY	2 cut(s)	9, 24
Csp6I	GTAC	1 cut(s)	1017
CviAII	CATG	7 cut(s)	76, 88, 617, 742, 833, 917, 939
CviQI	GTAC	1 cut(s)	1017
DdeI	CTNAG	5 cut(s)	330, 579, 639, 868, 873
DpnI	GATC	2 cut(s)	564, 937
DpnII	GATC	2 cut(s)	562, 935
EaeI	YGGCCR	3 cut(s)	11, 90, 373
EagI	CGGCCG	1 cut(s)	11
EclXI	CGGCCG	1 cut(s)	11
Eco130I	CCWWGG	2 cut(s)	75, 87
Eco24I	GRGCYC	1 cut(s)	325
Eco31I	GGTCTC	1 cut(s)	85
Eco52I	CGGCCG	1 cut(s)	11
EcoRII	CCWGG	2 cut(s)	687, 1003
EcoT14I	CCWWGG	2 cut(s)	75, 87
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	325
ErhI	CCWWGG	2 cut(s)	75, 87
FaeI	CATG	7 cut(s)	79, 91, 620, 745, 836, 920, 942
FatI	CATG	7 cut(s)	75, 87, 616, 741, 832, 916, 938
FbaI	TGATCA	1 cut(s)	562
FblI	GTMKAC	1 cut(s)	198
Fnu4HI	GCNGC	4 cut(s)	93, 129, 376, 988
FokI	GGATG	5 cut(s)	137, 424, 572, 647, 1012
FriOI	GRGCYC	1 cut(s)	325
Fsp4HI	GCNGC	4 cut(s)	93, 129, 376, 988
FspBI	CTAG	1 cut(s)	861
GluI	GCNGC	4 cut(s)	93, 129, 376, 988
GsaI	CCCAGC	1 cut(s)	273
HaeIII	GGCC	3 cut(s)	13, 92, 375
HapII	CCGG	3 cut(s)	10, 25, 33
Hin1II	CATG	7 cut(s)	79, 91, 620, 745, 836, 920, 942
HindIII	AAGCTT	1 cut(s)	338
HinfI	GANTC	1 cut(s)	148
HpaII	CCGG	3 cut(s)	10, 25, 33
HphI	GGTGA	3 cut(s)	434, 821, 854
Hpy166II	GTNNAC	1 cut(s)	199
Hpy188I	TCNGA	3 cut(s)	54, 580, 766
Hpy188III	TCNNGA	5 cut(s)	152, 557, 680, 861, 917
Hpy8I	GTNNAC	1 cut(s)	199
Hpy99I	CGWCG	2 cut(s)	19, 107
HpyAV	CCTTC	1 cut(s)	278
HpyCH4III	ACNGT	1 cut(s)	503
HpyCH4IV	ACGT	1 cut(s)	102
HpyCH4V	TGCA	5 cut(s)	4, 225, 262, 741, 815
HpyF10VI	GCNNNNNNNGC	3 cut(s)	10, 25, 238
HpyF3I	CTNAG	5 cut(s)	330, 579, 639, 868, 873
HpySE526I	ACGT	1 cut(s)	102
Hsp92II	CATG	7 cut(s)	79, 91, 620, 745, 836, 920, 942
KroI	GCCGGC	1 cut(s)	9
KroNI	GCCGGC	1 cut(s)	11
Ksp22I	TGATCA	1 cut(s)	562
Kzo9I	GATC	2 cut(s)	562, 935
LmnI	GCTCC	6 cut(s)	154, 229, 583, 692, 995, 1007
Lsp1109I	GCAGC	2 cut(s)	115, 974
LweI	GCATC	8 cut(s)	115, 249, 402, 465, 584, 625, 802, 990
MaeI	CTAG	1 cut(s)	861
MaeII	ACGT	1 cut(s)	102
MalI	GATC	2 cut(s)	564, 937
MboI	GATC	2 cut(s)	562, 935
MboII	GAAGA	4 cut(s)	346, 394, 492, 751
MhlI	GDGCHC	1 cut(s)	325
MluCI	AATT	7 cut(s)	213, 357, 396, 474, 803, 845, 980
MnlI	CCTC	6 cut(s)	310, 385, 565, 574, 732, 1003
Mph1103I	ATGCAT	1 cut(s)	6
MroNI	GCCGGC	1 cut(s)	9
MseI	TTAA	3 cut(s)	210, 651, 675
MslI	CAYNNNNRTG	4 cut(s)	461, 778, 921, 969
MspA1I	CMGCKG	1 cut(s)	1022
MspI	CCGG	3 cut(s)	10, 25, 33
MspR9I	CCNGG	2 cut(s)	689, 1005
MvaI	CCWGG	2 cut(s)	689, 1005
MwoI	GCNNNNNNNGC	3 cut(s)	10, 25, 238
NaeI	GCCGGC	1 cut(s)	11
NcoI	CCATGG	2 cut(s)	75, 87
NdeII	GATC	2 cut(s)	562, 935
NgoMIV	GCCGGC	1 cut(s)	9
NlaIII	CATG	7 cut(s)	79, 91, 620, 745, 836, 920, 942
NmeAIII	GCCGAG	1 cut(s)	17
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	836
OliI	CACNNNNGTG	1 cut(s)	778
PagI	TCATGA	1 cut(s)	916
PdiI	GCCGGC	1 cut(s)	11
PfeI	GAWTC	1 cut(s)	148
PflMI	CCANNNNNTGG	1 cut(s)	494
PkrI	GCNGC	4 cut(s)	94, 130, 377, 989
Psp6I	CCWGG	2 cut(s)	687, 1003
PspFI	CCCAGC	1 cut(s)	269
PspGI	CCWGG	2 cut(s)	687, 1003
PvuII	CAGCTG	1 cut(s)	1022
RsaI	GTAC	1 cut(s)	1018
RsaNI	GTAC	1 cut(s)	1017
RseI	CAYNNNNRTG	4 cut(s)	461, 778, 921, 969
SaqAI	TTAA	3 cut(s)	210, 651, 675
SatI	GCNGC	4 cut(s)	93, 129, 376, 988
Sau3AI	GATC	2 cut(s)	562, 935
ScrFI	CCNGG	2 cut(s)	689, 1005
SduI	GDGCHC	1 cut(s)	325
SfaNI	GCATC	8 cut(s)	115, 249, 402, 465, 584, 625, 802, 990
SfcI	CTRYAG	2 cut(s)	189, 621
SmiMI	CAYNNNNRTG	4 cut(s)	461, 778, 921, 969
SmlI	CTYRAG	1 cut(s)	254
SmoI	CTYRAG	1 cut(s)	254
Sse9I	AATT	7 cut(s)	213, 357, 396, 474, 803, 845, 980
SsiI	CCGC	2 cut(s)	93, 376
SspMI	CTAG	1 cut(s)	861
StyD4I	CCNGG	2 cut(s)	687, 1003
StyI	CCWWGG	2 cut(s)	75, 87
TaaI	ACNGT	1 cut(s)	503
TaiI	ACGT	1 cut(s)	105
TaqI	TCGA	1 cut(s)	308
TasI	AATT	7 cut(s)	213, 357, 396, 474, 803, 845, 980
TatI	WGTACW	1 cut(s)	1016
TauI	GCSGC	2 cut(s)	95, 378
TfiI	GAWTC	1 cut(s)	148
Tru1I	TTAA	3 cut(s)	210, 651, 675
Tru9I	TTAA	3 cut(s)	210, 651, 675
TseI	GCWGC	2 cut(s)	128, 987
TspDTI	ATGAA	5 cut(s)	462, 538, 605, 758, 987
TspGWI	ACGGA	1 cut(s)	991
Van91I	CCANNNNNTGG	1 cut(s)	494
XapI	RAATTY	2 cut(s)	803, 980
XbaI	TCTAGA	1 cut(s)	860
XceI	RCATGY	1 cut(s)	836
XcmI	CCANNNNNNNNNTGG	1 cut(s)	777
XmiI	GTMKAC	1 cut(s)	198
XspI	CTAG	1 cut(s)	861
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.