Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0002108

Physical Location & Seq

Genomic Coordinates Forward (+)

11691406 .. 11694929

Gene Structure 3524 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G113400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1029 bp

ATGCATAGCCGGGCATCGCAGAACCGGCTATCTGGTTCGGCTTTTCACTCTCGAATTTCAGCTCTCTTGCTGGCCATGCTTTCCACCATGGCCGCCATTTATGTCGCCGGCCGTCTGTGGCAGGATGCTGCGGATAGGGTTTATTTGATTCAGGAGCTTGATAAAAGAAGTGGTCAGGGAGAATCTGCCATATCTGTCGACGACACGCTTAAAGTTATAGCTTGCAGGGAGCAACAGAAGCAGTTGTCCACTCTTGAGATGCAACTAGCTGCAGCAAGACAGGAAGGTTTTGTTCCAAAGAGCTTGTCAAAAAATGAGGTGGCTCATTCTAAGAAAAAGCTTCTAGCTGTTATAGGAATTTTTACAACATTTGGCCGCAAGAAAAATAGGGATGCAATTCGTAAGGCGTGGATGCCTAGCGGTGCAGCACTAAAGAAATTGGCAGATGAAAAGGGCATCGTTGTGCGATTTGTAATTGGAAGAAGCCCAAATCGTGGAGACAGTTTGGACAGGCAAATAGACAGAGAAAATGAGCAGACCAACGACTTCATTGTTCTTGATGGTCAAGTGGAGGCATCTGAGGAGCGGCCAAAGAAGATGAAGTCATTCTATATTCATGCTGTAGAAAATTGGGATGCTGAGTTTTATGTTAAAGTCAATGATGATGTTTATGTTAATATTGATGTCCTGGGAGCAACACTAACTGCGTATTTGAATAAGCCTCGTGTCTATATTGGGTGTATGAAATCAGGCGAAGTGTTCTCTGAGCTAACACACAAGTGGTATGAACCAGACTGGTGGAAATTTGGCGATGCAAAATCATACTTTACCCATGCTTCTGGTGAATTGTATGCCATTTCTAGAGCATTAGCTCAGTTTATATCCATAAACAGGTCTATTCTTCGTACATATGCTCATGATGATGTTAGTGCTGGATCATGGTTTATTGGACTTGATGTGAAGCACATTGATGAACGCAAGTTTTGCTGCTCCTCCTGGTTAGCAGGAGCAATATGTACAGCTGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0006029 GO:0006464 GO:0006486 GO:0006493 GO:0006807 GO:0008150 GO:0008152 GO:0008378 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0010384 GO:0010404 GO:0010405 GO:0012505 GO:0016740 GO:0016757 GO:0016758 GO:0018193 GO:0018208 GO:0018258 GO:0019538 GO:0031410 GO:0031982 GO:0031984 GO:0034645 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044036 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0070085 GO:0071554 GO:0071704 GO:0097708 GO:0098791 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1990714

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4094 Galactosyl_T

Protein Analysis

343

Amino Acids

38.49

Weight (kDa)

8.92

Isoelectric Point (pI)

37.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002108)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G53340 AT5G53340
fragaria_vesca	FvH4_5g03830 FvH4_5g03830 FvH4_5g03830 FvH4_5g03830 FvH4_5g03830 FvH4_5g03830 FvH4_5g03830 FvH4_7g30880 FvH4_7g30880 FvH4_7g30880 FvH4_7g30880 FvH4_7g30880
malus_domestica	MD01G1213800.v1.1 MD06G1099700.v1.1 MD07G1283500.v1.1 MD14G1119400.v1.1
prunus_persica	Prupe.2G305900_v2.0.a1 Prupe.5G113400_v2.0.a1 Prupe.5G113400_v2.0.a1
pyrus_communis	pycom01g22450 pycom06g09500 pycom07g25760
rosa_chinensis	RchiOBHm_Chr1g0379951 RchiOBHm_Chr7g0195671
rosa_laevigata	RLG00000026346
rosa_multiflora	Rmu_sc0003314.1_g000015 Rmu_sc0004184.1_g000018 Rmu_sc0016754.1_g000001 Rmu_sc0035510.1_g000001
rosa_roxburghii	Rroxscaffold_3G00260230 Rroxscaffold_4G00279830
rosa_rugosa	Rorug01G0415900 Rorug07G0025600
rosa_samantha	Rh1AG440400 Rh1BG396200 Rh1DG427000 Rh7AG153400 Rh7BG154600 Rh7CG158600 Rh7CG158700
rosa_wichuraiana	Rw1G038290 Rw7G013100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	494
AccBSI	CCGCTC	1 cut(s)	586
AccI	GTMKAC	1 cut(s)	198
AciI	CCGC	5 cut(s)	93, 131, 376, 420, 586
AclWI	GGATC	1 cut(s)	943
AcoI	YGGCCR	5 cut(s)	72, 90, 109, 373, 587
AcsI	RAATTY	3 cut(s)	54, 357, 803
AfaI	GTAC	2 cut(s)	907, 1018
AfiI	CCNNNNNNNGG	2 cut(s)	494, 891
AgsI	TTSAA	1 cut(s)	715
AjnI	CCWGG	2 cut(s)	687, 995
AleI	CACNNNNGTG	1 cut(s)	778
Alw26I	GTCTC	1 cut(s)	492
AlwI	GGATC	1 cut(s)	943
AoxI	GGCC	5 cut(s)	72, 90, 109, 373, 587
ApeKI	GCWGC	5 cut(s)	128, 269, 272, 425, 987
ApoI	RAATTY	3 cut(s)	54, 357, 803
ArsI	GACNNNNNNTTYG	2 cut(s)	290, 322
Asp700I	GAANNNNTTC	1 cut(s)	605
AsuC2I	CCSGG	1 cut(s)	11
AsuHPI	GGTGA	1 cut(s)	854
BalI	TGGCCA	1 cut(s)	74
BauI	CACGAG	1 cut(s)	723
BbvI	GCAGC	5 cut(s)	115, 256, 284, 437, 974
BccI	CCATC	1 cut(s)	554
BceAI	ACGGC	1 cut(s)	96
BciT130I	CCWGG	2 cut(s)	689, 997
BcnI	CCSGG	1 cut(s)	11
BcoDI	GTCTC	1 cut(s)	492
BfaI	CTAG	4 cut(s)	266, 344, 417, 861
BfmI	CTRYAG	2 cut(s)	270, 621
BisI	GCNGC	8 cut(s)	93, 129, 270, 273, 376, 426, 587, 988
BlsI	GCNGC	8 cut(s)	94, 130, 271, 274, 377, 427, 588, 989
Bme1390I	CCNGG	3 cut(s)	11, 689, 997
BmrFI	CCNGG	3 cut(s)	11, 689, 997
BmsI	GCATC	9 cut(s)	23, 115, 249, 382, 402, 465, 584, 625, 802
BpuEI	CTTGAG	1 cut(s)	275
BpuMI	CCSGG	1 cut(s)	11
BsaJI	CCNNGG	2 cut(s)	87, 688
Bsc4I	CCNNNNNNNGG	2 cut(s)	494, 891
Bse118I	RCCGGY	2 cut(s)	24, 107
Bse1I	ACTGG	1 cut(s)	800
BseBI	CCWGG	2 cut(s)	689, 997
BseDI	CCNNGG	2 cut(s)	87, 688
BseGI	GGATG	4 cut(s)	130, 397, 417, 640
BseLI	CCNNNNNNNGG	2 cut(s)	494, 891
BseMII	CTCAG	4 cut(s)	570, 630, 756, 887
BseNI	ACTGG	1 cut(s)	800
BseRI	GAGGAG	2 cut(s)	596, 982
BseX3I	CGGCCG	1 cut(s)	109
BseXI	GCAGC	5 cut(s)	115, 256, 284, 437, 974
BsgI	GTGCAG	1 cut(s)	444
Bsh1285I	CGRYCG	1 cut(s)	112
BshFI	GGCC	5 cut(s)	74, 92, 111, 375, 589
BsiEI	CGRYCG	1 cut(s)	112
BsiSI	CCGG	3 cut(s)	10, 25, 108
BslI	CCNNNNNNNGG	2 cut(s)	494, 891
BsmAI	GTCTC	1 cut(s)	492
BsnI	GGCC	5 cut(s)	74, 92, 111, 375, 589
Bsp1407I	TGTACA	1 cut(s)	1016
Bsp143I	GATC	1 cut(s)	935
Bsp19I	CCATGG	1 cut(s)	87
BspACI	CCGC	5 cut(s)	93, 131, 376, 420, 586
BspANI	GGCC	5 cut(s)	74, 92, 111, 375, 589
BspCNI	CTCAG	4 cut(s)	571, 631, 757, 886
BspHI	TCATGA	1 cut(s)	916
BspMAI	CTGCAG	1 cut(s)	274
BspPI	GGATC	1 cut(s)	943
BsrBI	CCGCTC	1 cut(s)	586
BsrFI	RCCGGY	2 cut(s)	24, 107
BsrGI	TGTACA	1 cut(s)	1016
BsrI	ACTGG	1 cut(s)	800
BssAI	RCCGGY	2 cut(s)	24, 107
BssECI	CCNNGG	2 cut(s)	87, 688
BssMI	GATC	1 cut(s)	935
BssSI	CACGAG	1 cut(s)	723
BssT1I	CCWWGG	1 cut(s)	87
Bst2BI	CACGAG	1 cut(s)	723
Bst2UI	CCWGG	2 cut(s)	689, 997
Bst4CI	ACNGT	1 cut(s)	503
BstAPI	GCANNNNNTGC	1 cut(s)	984
BstAUI	TGTACA	1 cut(s)	1016
BstC8I	GCNNGC	3 cut(s)	72, 109, 223
BstDEI	CTNAG	5 cut(s)	330, 579, 639, 765, 873
BstDSI	CCRYGG	1 cut(s)	87
BstF5I	GGATG	4 cut(s)	130, 397, 417, 640
BstKTI	GATC	1 cut(s)	938
BstMAI	GTCTC	1 cut(s)	492
BstMBI	GATC	1 cut(s)	935
BstMCI	CGRYCG	1 cut(s)	112
BstMWI	GCNNNNNNNGC	4 cut(s)	25, 76, 238, 984
BstNI	CCWGG	2 cut(s)	689, 997
BstSCI	CCNGG	3 cut(s)	9, 687, 995
BstSFI	CTRYAG	2 cut(s)	270, 621
BstV1I	GCAGC	5 cut(s)	115, 256, 284, 437, 974
BstXI	CCANNNNNNTGG	2 cut(s)	798, 839
BstZI	CGGCCG	1 cut(s)	109
BsuRI	GGCC	5 cut(s)	74, 92, 111, 375, 589
BtgI	CCRYGG	1 cut(s)	87
BtgZI	GCGATG	1 cut(s)	825
BtsCI	GGATG	4 cut(s)	130, 397, 417, 640
Cac8I	GCNNGC	3 cut(s)	72, 109, 223
CciI	TCATGA	1 cut(s)	916
Cfr10I	RCCGGY	2 cut(s)	24, 107
Csp6I	GTAC	2 cut(s)	906, 1017
CviAII	CATG	6 cut(s)	76, 88, 617, 833, 917, 939
CviQI	GTAC	2 cut(s)	906, 1017
DdeI	CTNAG	5 cut(s)	330, 579, 639, 765, 873
DpnI	GATC	1 cut(s)	937
DpnII	GATC	1 cut(s)	935
EaeI	YGGCCR	5 cut(s)	72, 90, 109, 373, 587
EagI	CGGCCG	1 cut(s)	109
EclXI	CGGCCG	1 cut(s)	109
Eco130I	CCWWGG	1 cut(s)	87
Eco52I	CGGCCG	1 cut(s)	109
EcoRII	CCWGG	2 cut(s)	687, 995
EcoT14I	CCWWGG	1 cut(s)	87
EcoT22I	ATGCAT	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	87
FaeI	CATG	6 cut(s)	79, 91, 620, 836, 920, 942
FatI	CATG	6 cut(s)	75, 87, 616, 832, 916, 938
FauNDI	CATATG	1 cut(s)	910
FblI	GTMKAC	1 cut(s)	198
Fnu4HI	GCNGC	8 cut(s)	93, 129, 270, 273, 376, 426, 587, 988
FokI	GGATG	4 cut(s)	137, 404, 424, 647
Fsp4HI	GCNGC	8 cut(s)	93, 129, 270, 273, 376, 426, 587, 988
FspBI	CTAG	4 cut(s)	266, 344, 417, 861
GluI	GCNGC	8 cut(s)	93, 129, 270, 273, 376, 426, 587, 988
HaeIII	GGCC	5 cut(s)	74, 92, 111, 375, 589
HapII	CCGG	3 cut(s)	10, 25, 108
Hin1II	CATG	6 cut(s)	79, 91, 620, 836, 920, 942
HincII	GTYRAC	1 cut(s)	199
HindII	GTYRAC	1 cut(s)	199
HindIII	AAGCTT	1 cut(s)	338
HinfI	GANTC	2 cut(s)	148, 182
HpaII	CCGG	3 cut(s)	10, 25, 108
HphI	GGTGA	1 cut(s)	854
Hpy166II	GTNNAC	2 cut(s)	199, 249
Hpy188I	TCNGA	2 cut(s)	580, 766
Hpy188III	TCNNGA	6 cut(s)	51, 152, 254, 557, 861, 917
Hpy8I	GTNNAC	2 cut(s)	199, 249
Hpy99I	CGWCG	1 cut(s)	203
HpyAV	CCTTC	1 cut(s)	278
HpyCH4III	ACNGT	1 cut(s)	503
HpyCH4V	TGCA	7 cut(s)	4, 225, 262, 272, 395, 425, 815
HpyF10VI	GCNNNNNNNGC	4 cut(s)	25, 76, 238, 984
HpyF3I	CTNAG	5 cut(s)	330, 579, 639, 765, 873
Hsp92II	CATG	6 cut(s)	79, 91, 620, 836, 920, 942
KroI	GCCGGC	1 cut(s)	107
KroNI	GCCGGC	1 cut(s)	109
Kzo9I	GATC	1 cut(s)	935
LmnI	GCTCC	6 cut(s)	154, 229, 583, 692, 995, 1007
Lsp1109I	GCAGC	5 cut(s)	115, 256, 284, 437, 974
LweI	GCATC	9 cut(s)	23, 115, 249, 382, 402, 465, 584, 625, 802
MaeI	CTAG	4 cut(s)	266, 344, 417, 861
MalI	GATC	1 cut(s)	937
MbiI	CCGCTC	1 cut(s)	586
MboI	GATC	1 cut(s)	935
MboII	GAAGA	3 cut(s)	492, 607, 893
MlsI	TGGCCA	1 cut(s)	74
MluCI	AATT	8 cut(s)	54, 357, 396, 437, 474, 628, 803, 845
MluNI	TGGCCA	1 cut(s)	74
MnlI	CCTC	5 cut(s)	310, 565, 574, 732, 1003
Mox20I	TGGCCA	1 cut(s)	74
Mph1103I	ATGCAT	1 cut(s)	6
MroNI	GCCGGC	1 cut(s)	107
MroXI	GAANNNNTTC	1 cut(s)	605
MscI	TGGCCA	1 cut(s)	74
MseI	TTAA	3 cut(s)	210, 651, 675
MslI	CAYNNNNRTG	4 cut(s)	461, 778, 921, 969
Msp20I	TGGCCA	1 cut(s)	74
MspA1I	CMGCKG	1 cut(s)	1022
MspI	CCGG	3 cut(s)	10, 25, 108
MspR9I	CCNGG	3 cut(s)	11, 689, 997
MvaI	CCWGG	2 cut(s)	689, 997
MwoI	GCNNNNNNNGC	4 cut(s)	25, 76, 238, 984
NaeI	GCCGGC	1 cut(s)	109
NciI	CCSGG	1 cut(s)	11
NcoI	CCATGG	1 cut(s)	87
NdeI	CATATG	1 cut(s)	910
NdeII	GATC	1 cut(s)	935
NgoMIV	GCCGGC	1 cut(s)	107
NlaIII	CATG	6 cut(s)	79, 91, 620, 836, 920, 942
NsiI	ATGCAT	1 cut(s)	6
OliI	CACNNNNGTG	1 cut(s)	778
PagI	TCATGA	1 cut(s)	916
PdiI	GCCGGC	1 cut(s)	109
PdmI	GAANNNNTTC	1 cut(s)	605
PfeI	GAWTC	2 cut(s)	148, 182
PflMI	CCANNNNNTGG	1 cut(s)	494
PkrI	GCNGC	8 cut(s)	94, 130, 271, 274, 377, 427, 588, 989
Psp6I	CCWGG	2 cut(s)	687, 995
PspGI	CCWGG	2 cut(s)	687, 995
PstI	CTGCAG	1 cut(s)	274
PvuII	CAGCTG	1 cut(s)	1022
RsaI	GTAC	2 cut(s)	907, 1018
RsaNI	GTAC	2 cut(s)	906, 1017
RseI	CAYNNNNRTG	4 cut(s)	461, 778, 921, 969
SalI	GTCGAC	1 cut(s)	197
SaqAI	TTAA	3 cut(s)	210, 651, 675
SatI	GCNGC	8 cut(s)	93, 129, 270, 273, 376, 426, 587, 988
Sau3AI	GATC	1 cut(s)	935
ScrFI	CCNGG	3 cut(s)	11, 689, 997
SfaNI	GCATC	9 cut(s)	23, 115, 249, 382, 402, 465, 584, 625, 802
SfcI	CTRYAG	2 cut(s)	270, 621
SmiMI	CAYNNNNRTG	4 cut(s)	461, 778, 921, 969
SmlI	CTYRAG	1 cut(s)	254
SmoI	CTYRAG	1 cut(s)	254
Sse9I	AATT	8 cut(s)	54, 357, 396, 437, 474, 628, 803, 845
SsiI	CCGC	5 cut(s)	93, 131, 376, 420, 586
SspI	AATATT	1 cut(s)	679
SspMI	CTAG	4 cut(s)	266, 344, 417, 861
StyD4I	CCNGG	3 cut(s)	9, 687, 995
StyI	CCWWGG	1 cut(s)	87
TaaI	ACNGT	1 cut(s)	503
TaqI	TCGA	2 cut(s)	52, 198
TasI	AATT	8 cut(s)	54, 357, 396, 437, 474, 628, 803, 845
TatI	WGTACW	1 cut(s)	1016
TauI	GCSGC	3 cut(s)	95, 378, 589
TfiI	GAWTC	2 cut(s)	148, 182
Tru1I	TTAA	3 cut(s)	210, 651, 675
Tru9I	TTAA	3 cut(s)	210, 651, 675
TseI	GCWGC	5 cut(s)	128, 269, 272, 425, 987
TspDTI	ATGAA	7 cut(s)	462, 538, 605, 614, 758, 801, 987
Van91I	CCANNNNNTGG	1 cut(s)	494
XapI	RAATTY	3 cut(s)	54, 357, 803
XbaI	TCTAGA	1 cut(s)	860
XmiI	GTMKAC	1 cut(s)	198
XmnI	GAANNNNTTC	1 cut(s)	605
XspI	CTAG	4 cut(s)	266, 344, 417, 861
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.