Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0002108

Physical Location & Seq

Genomic Coordinates Forward (+)

54673342 .. 54679497

Gene Structure 6156 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00260230.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGCATGGCCGGCCATCGCAGAACCGGCTATCGTCTTTTCAGTCGAGAATTTCAGCTCTCCTCCTCGCCATGCTCTCCACCATGGCCGTAATTTACGTCGCCGGCCGTCTGTGGCAGGATGCTGAAGATAGGGTTTATTTGATTAAGGAAATTGATAAAAGAAATAGTCAGGGTCACTCTGCTATATCTGTGGACGATACGCTTAAGATTATAGCTTGCAGGGAGCAACAGAAGAAGTTGTCCGCCGTAGAGATGGAACTGGCTGCAGCAAGGAAAGAAGGCTTTGTTCCAAAGAGCTCGTCGAAAAATGAGAAGGATGATTCTAAGAAGAAGCTTCTAGCAGTTGTAGGAATTTTCACGACGTTTGGTCGCAATAAAAATAGGGAGGCAATTCGTAAGGCGTGGATGCCTACTGGTGCAGCATTGAAAAAATTGGCAGATGAAAAGGGCATCGTTGTGCGATTTGTAATTGGAAGAAGCCCAAATCGTGGAGACAGTTTGGACAAGCAAATCGACAGTGAAAGTAGGCAGACCAAAGACTTCATTGTTCTTGATGGTCAAGTAGAGGCATATGAGGAGGGTCCAAAAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0006029 GO:0006464 GO:0006486 GO:0006493 GO:0006807 GO:0008150 GO:0008152 GO:0008378 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0010384 GO:0010404 GO:0010405 GO:0012505 GO:0016740 GO:0016757 GO:0016758 GO:0018193 GO:0018208 GO:0018258 GO:0019538 GO:0031410 GO:0031982 GO:0031984 GO:0034645 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044036 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0070085 GO:0071554 GO:0071704 GO:0097708 GO:0098791 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1990714

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4094 Galactosyl_T

Protein Analysis

197

Amino Acids

22.07

Weight (kDa)

9.73

Isoelectric Point (pI)

44.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF4094	PF13334	15 - 92	2e-09	Domain of unknown function (DUF4094)
Galactosyl_T	PF01762	127 - 192	7.1e-09	Galactosyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002108)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G53340 AT5G53340
fragaria_vesca	FvH4_5g03830 FvH4_5g03830 FvH4_5g03830 FvH4_5g03830 FvH4_5g03830 FvH4_5g03830 FvH4_5g03830 FvH4_7g30880 FvH4_7g30880 FvH4_7g30880 FvH4_7g30880 FvH4_7g30880
malus_domestica	MD01G1213800.v1.1 MD06G1099700.v1.1 MD07G1283500.v1.1 MD14G1119400.v1.1
prunus_persica	Prupe.2G305900_v2.0.a1 Prupe.5G113400_v2.0.a1 Prupe.5G113400_v2.0.a1
pyrus_communis	pycom01g22450 pycom06g09500 pycom07g25760
rosa_chinensis	RchiOBHm_Chr1g0379951 RchiOBHm_Chr7g0195671
rosa_laevigata	RLG00000026346
rosa_multiflora	Rmu_sc0003314.1_g000015 Rmu_sc0004184.1_g000018 Rmu_sc0016754.1_g000001 Rmu_sc0035510.1_g000001
rosa_roxburghii	Rroxscaffold_3G00260230 Rroxscaffold_4G00279830
rosa_rugosa	Rorug01G0415900 Rorug07G0025600
rosa_samantha	Rh1AG440400 Rh1BG396200 Rh1DG427000 Rh7AG153400 Rh7BG154600 Rh7CG158600 Rh7CG158700
rosa_wichuraiana	Rw1G038290 Rw7G013100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	488
AciI	CCGC	1 cut(s)	243
AcoI	YGGCCR	4 cut(s)	7, 11, 84, 103
AcsI	RAATTY	2 cut(s)	48, 351
AcuI	CTGAAG	1 cut(s)	144
AfiI	CCNNNNNNNGG	1 cut(s)	488
AflII	CTTAAG	1 cut(s)	203
AgsI	TTSAA	1 cut(s)	427
AhdI	GACNNNNNGTC	1 cut(s)	366
AluBI	AGCT	4 cut(s)	56, 215, 297, 334
AluI	AGCT	4 cut(s)	56, 215, 297, 334
Alw21I	GWGCWC	1 cut(s)	299
Alw26I	GTCTC	1 cut(s)	486
AoxI	GGCC	4 cut(s)	7, 11, 84, 103
ApeKI	GCWGC	3 cut(s)	263, 266, 419
ApoI	RAATTY	2 cut(s)	48, 351
ArsI	GACNNNNNNTTYG	2 cut(s)	284, 316
AspS9I	GGNCC	1 cut(s)	581
AvaII	GGWCC	1 cut(s)	581
BanII	GRGCYC	1 cut(s)	299
Bbv12I	GWGCWC	1 cut(s)	299
BbvI	GCAGC	3 cut(s)	250, 278, 431
BccI	CCATC	3 cut(s)	22, 247, 548
BceAI	ACGGC	3 cut(s)	71, 90, 230
BcoDI	GTCTC	1 cut(s)	486
BfaI	CTAG	1 cut(s)	338
BfmI	CTRYAG	1 cut(s)	264
BfrI	CTTAAG	1 cut(s)	203
BisI	GCNGC	3 cut(s)	264, 267, 420
BlsI	GCNGC	3 cut(s)	265, 268, 421
Bme18I	GGWCC	1 cut(s)	581
BmeRI	GACNNNNNGTC	1 cut(s)	366
BmgT120I	GGNCC	1 cut(s)	581
BmiI	GGNNCC	1 cut(s)	582
BmsI	GCATC	3 cut(s)	109, 396, 459
BsaJI	CCNNGG	1 cut(s)	81
Bsc4I	CCNNNNNNNGG	1 cut(s)	488
Bse118I	RCCGGY	3 cut(s)	9, 24, 101
Bse1I	ACTGG	2 cut(s)	264, 418
BseDI	CCNNGG	1 cut(s)	81
BseGI	GGATG	3 cut(s)	124, 322, 411
BseLI	CCNNNNNNNGG	1 cut(s)	488
BseNI	ACTGG	2 cut(s)	264, 418
BseRI	GAGGAG	3 cut(s)	50, 53, 590
BseX3I	CGGCCG	1 cut(s)	103
BseXI	GCAGC	3 cut(s)	250, 278, 431
BsgI	GTGCAG	1 cut(s)	438
Bsh1285I	CGRYCG	1 cut(s)	106
BshFI	GGCC	4 cut(s)	9, 13, 86, 105
BsiEI	CGRYCG	1 cut(s)	106
BsiHKAI	GWGCWC	1 cut(s)	299
BsiSI	CCGG	3 cut(s)	10, 25, 102
BslI	CCNNNNNNNGG	1 cut(s)	488
BsmAI	GTCTC	1 cut(s)	486
BsnI	GGCC	4 cut(s)	9, 13, 86, 105
Bsp1286I	GDGCHC	1 cut(s)	299
Bsp19I	CCATGG	1 cut(s)	81
BspACI	CCGC	1 cut(s)	243
BspANI	GGCC	4 cut(s)	9, 13, 86, 105
BspLI	GGNNCC	1 cut(s)	582
BspMAI	CTGCAG	1 cut(s)	268
BspTI	CTTAAG	1 cut(s)	203
BsrFI	RCCGGY	3 cut(s)	9, 24, 101
BsrI	ACTGG	2 cut(s)	264, 418
BssAI	RCCGGY	3 cut(s)	9, 24, 101
BssECI	CCNNGG	1 cut(s)	81
BssT1I	CCWWGG	1 cut(s)	81
Bst4CI	ACNGT	2 cut(s)	497, 518
BstAFI	CTTAAG	1 cut(s)	203
BstC8I	GCNNGC	3 cut(s)	11, 103, 217
BstDEI	CTNAG	1 cut(s)	324
BstDSI	CCRYGG	1 cut(s)	81
BstF5I	GGATG	3 cut(s)	124, 322, 411
BstMAI	GTCTC	1 cut(s)	486
BstMCI	CGRYCG	1 cut(s)	106
BstMWI	GCNNNNNNNGC	2 cut(s)	10, 25
BstSFI	CTRYAG	1 cut(s)	264
BstV1I	GCAGC	3 cut(s)	250, 278, 431
BstZI	CGGCCG	1 cut(s)	103
BsuRI	GGCC	4 cut(s)	9, 13, 86, 105
BtgI	CCRYGG	1 cut(s)	81
BtsCI	GGATG	3 cut(s)	124, 322, 411
BtsIMutI	CAGTG	1 cut(s)	523
Cac8I	GCNNGC	3 cut(s)	11, 103, 217
Cfr10I	RCCGGY	3 cut(s)	9, 24, 101
Cfr13I	GGNCC	1 cut(s)	581
CviAII	CATG	3 cut(s)	5, 70, 82
DdeI	CTNAG	1 cut(s)	324
DriI	GACNNNNNGTC	1 cut(s)	366
EaeI	YGGCCR	4 cut(s)	7, 11, 84, 103
EagI	CGGCCG	1 cut(s)	103
Eam1105I	GACNNNNNGTC	1 cut(s)	366
EciI	GGCGGA	1 cut(s)	232
Ecl136II	GAGCTC	1 cut(s)	297
EclXI	CGGCCG	1 cut(s)	103
Eco130I	CCWWGG	1 cut(s)	81
Eco24I	GRGCYC	1 cut(s)	299
Eco47I	GGWCC	1 cut(s)	581
Eco52I	CGGCCG	1 cut(s)	103
Eco53kI	GAGCTC	1 cut(s)	297
Eco57I	CTGAAG	1 cut(s)	144
EcoICRI	GAGCTC	1 cut(s)	297
EcoT14I	CCWWGG	1 cut(s)	81
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	299
ErhI	CCWWGG	1 cut(s)	81
FaeI	CATG	3 cut(s)	8, 73, 85
FaiI	YATR	7 cut(s)	6, 71, 83, 185, 212, 571, 573
FatI	CATG	3 cut(s)	4, 69, 81
FauNDI	CATATG	1 cut(s)	571
Fnu4HI	GCNGC	3 cut(s)	264, 267, 420
FokI	GGATG	3 cut(s)	131, 329, 418
FriOI	GRGCYC	1 cut(s)	299
FseI	GGCCGGCC	1 cut(s)	13
Fsp4HI	GCNGC	3 cut(s)	264, 267, 420
FspBI	CTAG	1 cut(s)	338
GluI	GCNGC	3 cut(s)	264, 267, 420
HaeIII	GGCC	4 cut(s)	9, 13, 86, 105
HapII	CCGG	3 cut(s)	10, 25, 102
Hin1II	CATG	3 cut(s)	8, 73, 85
HindIII	AAGCTT	1 cut(s)	332
HinfI	GANTC	1 cut(s)	320
HpaII	CCGG	3 cut(s)	10, 25, 102
Hpy166II	GTNNAC	1 cut(s)	193
Hpy188III	TCNNGA	3 cut(s)	45, 358, 551
Hpy8I	GTNNAC	1 cut(s)	193
Hpy99I	CGWCG	3 cut(s)	101, 304, 364
HpyAV	CCTTC	2 cut(s)	272, 307
HpyCH4III	ACNGT	2 cut(s)	497, 518
HpyCH4IV	ACGT	2 cut(s)	96, 362
HpyCH4V	TGCA	4 cut(s)	4, 219, 266, 419
HpyF10VI	GCNNNNNNNGC	2 cut(s)	10, 25
HpyF3I	CTNAG	1 cut(s)	324
HpySE526I	ACGT	2 cut(s)	96, 362
Hsp92II	CATG	3 cut(s)	8, 73, 85
KroI	GCCGGC	2 cut(s)	9, 101
KroNI	GCCGGC	2 cut(s)	11, 103
LmnI	GCTCC	1 cut(s)	223
LpnPI	CCDG	8 cut(s)	23, 38, 101, 115, 155, 205, 245, 399
Lsp1109I	GCAGC	3 cut(s)	250, 278, 431
LweI	GCATC	3 cut(s)	109, 396, 459
MaeI	CTAG	1 cut(s)	338
MaeII	ACGT	2 cut(s)	96, 362
MaeIII	GTNAC	1 cut(s)	173
MboII	GAAGA	4 cut(s)	137, 244, 340, 486
MhlI	GDGCHC	1 cut(s)	299
MluCI	AATT	7 cut(s)	48, 90, 150, 351, 390, 431, 468
MnlI	CCTC	6 cut(s)	71, 74, 379, 559, 568, 571
Mph1103I	ATGCAT	1 cut(s)	6
MroNI	GCCGGC	2 cut(s)	9, 101
MseI	TTAA	2 cut(s)	144, 204
MslI	CAYNNNNRTG	1 cut(s)	455
MspCI	CTTAAG	1 cut(s)	203
MspI	CCGG	3 cut(s)	10, 25, 102
MwoI	GCNNNNNNNGC	2 cut(s)	10, 25
NaeI	GCCGGC	2 cut(s)	11, 103
NcoI	CCATGG	1 cut(s)	81
NdeI	CATATG	1 cut(s)	571
NgoMIV	GCCGGC	2 cut(s)	9, 101
NlaIII	CATG	3 cut(s)	8, 73, 85
NlaIV	GGNNCC	1 cut(s)	582
NmuCI	GTSAC	1 cut(s)	173
NsiI	ATGCAT	1 cut(s)	6
PdiI	GCCGGC	2 cut(s)	11, 103
PfeI	GAWTC	1 cut(s)	320
PflMI	CCANNNNNTGG	1 cut(s)	488
PkrI	GCNGC	3 cut(s)	265, 268, 421
Psp124BI	GAGCTC	1 cut(s)	299
PspN4I	GGNNCC	1 cut(s)	582
PspPI	GGNCC	1 cut(s)	581
PstI	CTGCAG	1 cut(s)	268
RigI	GGCCGGCC	1 cut(s)	13
RseI	CAYNNNNRTG	1 cut(s)	455
SacI	GAGCTC	1 cut(s)	299
SaqAI	TTAA	2 cut(s)	144, 204
SatI	GCNGC	3 cut(s)	264, 267, 420
Sau96I	GGNCC	1 cut(s)	581
SduI	GDGCHC	1 cut(s)	299
SetI	ASST	6 cut(s)	58, 99, 217, 299, 336, 365
SfaNI	GCATC	3 cut(s)	109, 396, 459
SfcI	CTRYAG	1 cut(s)	264
SinI	GGWCC	1 cut(s)	581
SmiMI	CAYNNNNRTG	1 cut(s)	455
SmlI	CTYRAG	1 cut(s)	203
SmoI	CTYRAG	1 cut(s)	203
Sse9I	AATT	7 cut(s)	48, 90, 150, 351, 390, 431, 468
SsiI	CCGC	1 cut(s)	243
SspMI	CTAG	1 cut(s)	338
SstI	GAGCTC	1 cut(s)	299
StyI	CCWWGG	1 cut(s)	81
TaaI	ACNGT	2 cut(s)	497, 518
TaiI	ACGT	2 cut(s)	99, 365
TaqI	TCGA	3 cut(s)	44, 302, 513
TasI	AATT	7 cut(s)	48, 90, 150, 351, 390, 431, 468
TfiI	GAWTC	1 cut(s)	320
Tru1I	TTAA	2 cut(s)	144, 204
Tru9I	TTAA	2 cut(s)	144, 204
TscAI	CASTG	1 cut(s)	523
TseFI	GTSAC	1 cut(s)	173
TseI	GCWGC	3 cut(s)	263, 266, 419
Tsp45I	GTSAC	1 cut(s)	173
TspDTI	ATGAA	2 cut(s)	456, 532
TspRI	CASTG	1 cut(s)	523
Van91I	CCANNNNNTGG	1 cut(s)	488
Vha464I	CTTAAG	1 cut(s)	203
VpaK11BI	GGWCC	1 cut(s)	581
XapI	RAATTY	2 cut(s)	48, 351
XspI	CTAG	1 cut(s)	338
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.