Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0002108

Physical Location & Seq

Genomic Coordinates Forward (+)

29140359 .. 29143782

Gene Structure 3424 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G305900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1029 bp

ATGGTAGACAAAATGCAGGGCAGGGCATCGAGTGCTCGTGTTTTCCGATCCCGGATTCCGACGCTCTTGGTCTCCATGTTCGCCACCTTCGCTTCCATCTATGTGGCTGGCCGGCTGTGGCAGGATTCGGAGAACAGGGTTTATTTGATCAAAGAACTCGATAGGATTATTGGGCAGGGGCGATCTGTCATATCAGTGGATGATACATTGAAGATCATAGCCTGCAGGGAACAGCATAAGAAACTATCAGCTCTTGAGATGGAGTTGGCTGGAGCTAGACAGGAGGGTTTTACTTCAATGCGCTCCACAGAGATTAATGGAACTGATTATAAGAGAAGGCCACTAGTGGTGATTGGAATTTTTACAACCTTTGGTCGCAAAAACAATAGAGATGCAATTCGTAAGGCGTGGATGGGAACAGGTGCTGCCTTGAAAAAAATGGAGAATGAAAAGGGAATAATCGCACGATTTGTAATTGGAAGAAGTGCAAATCATGGGGATAGTTTGGACAGAGCCATTGACAATGAAAACAGGCAGACTAAGGACTTCATTATTCTTGATACCCATTTAGAGGCACCTGAAGAGTTCCCAAAGAAGGCTAAACTGTTCTTCGCTCATGCTGCTGAAGAATGGAATGCTGAGTTTTACTCCAAAGTCAATGATGATGTTTATGTAAATATTGATGCTCTAGGAGCTACACTCGCAACTCATTTAGACAAACCTCGTGTTTATATGGGGTGCATGAAATCGGGCGAAGTTTTCTCTGAGCCGAGCCAAAAATGGTATGAACCAGAATGGTGGAAGTTTGGCGATAAAAAATCATATTTCCGCCACGCTTCAGGTGAGATGTACGTCATATCTCAAGCTTTGGCCAAATTTGTTTCAATCAATAGAGGTATACTCCGTACCTATGCGCATGATGATATCAGTGTCGGGTCTTGGTTTATTGGGATTGATGTTAAACATGTGGATGAAGCCAAATTTTGCTGCTCTTCTTGGACGGGAGGAGCTATTTGTGCGGGTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0006029 GO:0006464 GO:0006486 GO:0006493 GO:0006807 GO:0008150 GO:0008152 GO:0008378 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0010384 GO:0010404 GO:0010405 GO:0012505 GO:0016740 GO:0016757 GO:0016758 GO:0018193 GO:0018208 GO:0018258 GO:0019538 GO:0031410 GO:0031982 GO:0031984 GO:0034645 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044036 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0070085 GO:0071554 GO:0071704 GO:0097708 GO:0098791 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1990714

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4094 Galactosyl_T

Protein Analysis

343

Amino Acids

38.68

Weight (kDa)

8.93

Isoelectric Point (pI)

33.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002108)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G53340 AT5G53340
fragaria_vesca	FvH4_5g03830 FvH4_5g03830 FvH4_5g03830 FvH4_5g03830 FvH4_5g03830 FvH4_5g03830 FvH4_5g03830 FvH4_7g30880 FvH4_7g30880 FvH4_7g30880 FvH4_7g30880 FvH4_7g30880
malus_domestica	MD01G1213800.v1.1 MD06G1099700.v1.1 MD07G1283500.v1.1 MD14G1119400.v1.1
prunus_persica	Prupe.2G305900_v2.0.a1 Prupe.5G113400_v2.0.a1 Prupe.5G113400_v2.0.a1
pyrus_communis	pycom01g22450 pycom06g09500 pycom07g25760
rosa_chinensis	RchiOBHm_Chr1g0379951 RchiOBHm_Chr7g0195671
rosa_laevigata	RLG00000026346
rosa_multiflora	Rmu_sc0003314.1_g000015 Rmu_sc0004184.1_g000018 Rmu_sc0016754.1_g000001 Rmu_sc0035510.1_g000001
rosa_roxburghii	Rroxscaffold_3G00260230 Rroxscaffold_4G00279830
rosa_rugosa	Rorug01G0415900 Rorug07G0025600
rosa_samantha	Rh1AG440400 Rh1BG396200 Rh1DG427000 Rh7AG153400 Rh7BG154600 Rh7CG158600 Rh7CG158700
rosa_wichuraiana	Rw1G038290 Rw7G013100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	330
Acc16I	TGCGCA	1 cut(s)	915
AccB1I	GGYRCC	1 cut(s)	574
AccI	GTMKAC	2 cut(s)	6, 898
AciI	CCGC	2 cut(s)	829, 1019
AclWI	GGATC	1 cut(s)	42
AcoI	YGGCCR	2 cut(s)	109, 870
AcsI	RAATTY	3 cut(s)	357, 875, 980
AcuI	CTGAAG	3 cut(s)	600, 645, 822
AfaI	GTAC	2 cut(s)	851, 907
AfiI	CCNNNNNNNGG	2 cut(s)	571, 595
AflIII	ACRYGT	1 cut(s)	964
AgsI	TTSAA	4 cut(s)	211, 297, 433, 885
AhlI	ACTAGT	1 cut(s)	343
AluBI	AGCT	5 cut(s)	251, 275, 695, 866, 1010
AluI	AGCT	5 cut(s)	251, 275, 695, 866, 1010
Alw21I	GWGCWC	1 cut(s)	37
Alw26I	GTCTC	1 cut(s)	76
AlwI	GGATC	1 cut(s)	42
AlwNI	CAGNNNCTG	1 cut(s)	425
AoxI	GGCC	3 cut(s)	109, 338, 870
ApeKI	GCWGC	3 cut(s)	425, 620, 987
ApoI	RAATTY	3 cut(s)	357, 875, 980
AseI	ATTAAT	1 cut(s)	315
AspLEI	GCGC	2 cut(s)	303, 916
AsuC2I	CCSGG	1 cut(s)	52
AsuHPI	GGTGA	2 cut(s)	361, 854
BalI	TGGCCA	1 cut(s)	872
BanI	GGYRCC	1 cut(s)	574
BauI	CACGAG	2 cut(s)	36, 723
Bbv12I	GWGCWC	1 cut(s)	37
BbvI	GCAGC	3 cut(s)	412, 607, 974
BccI	CCATC	3 cut(s)	104, 253, 406
BclI	TGATCA	1 cut(s)	147
BcnI	CCSGG	1 cut(s)	52
BcoDI	GTCTC	1 cut(s)	76
BcuI	ACTAGT	1 cut(s)	343
BfaI	CTAG	3 cut(s)	276, 344, 689
BfmI	CTRYAG	1 cut(s)	223
BisI	GCNGC	3 cut(s)	426, 621, 988
BlsI	GCNGC	3 cut(s)	427, 622, 989
Bme1390I	CCNGG	1 cut(s)	52
BmiI	GGNNCC	1 cut(s)	576
BmrFI	CCNGG	1 cut(s)	52
BmsI	GCATC	3 cut(s)	35, 382, 673
BplI	GAGNNNNNCTC	6 cut(s)	632, 664, 684, 716, 885, 917
BpmI	CTGGAG	1 cut(s)	291
BpuEI	CTTGAG	2 cut(s)	275, 846
BpuMI	CCSGG	1 cut(s)	52
BsaI	GGTCTC	1 cut(s)	76
Bsc4I	CCNNNNNNNGG	2 cut(s)	571, 595
Bse118I	RCCGGY	1 cut(s)	111
BseGI	GGATG	3 cut(s)	205, 417, 976
BseLI	CCNNNNNNNGG	2 cut(s)	571, 595
BseMII	CTCAG	2 cut(s)	630, 756
BseRI	GAGGAG	1 cut(s)	1020
BseXI	GCAGC	3 cut(s)	412, 607, 974
BshFI	GGCC	3 cut(s)	111, 340, 872
BshNI	GGYRCC	1 cut(s)	574
BsiHKAI	GWGCWC	1 cut(s)	37
BsiSI	CCGG	2 cut(s)	52, 112
BslI	CCNNNNNNNGG	2 cut(s)	571, 595
BsmAI	GTCTC	1 cut(s)	76
BsmI	GAATGC	1 cut(s)	640
BsnI	GGCC	3 cut(s)	111, 340, 872
Bso31I	GGTCTC	1 cut(s)	76
Bsp1286I	GDGCHC	1 cut(s)	37
Bsp143I	GATC	4 cut(s)	47, 147, 182, 213
BspACI	CCGC	2 cut(s)	829, 1019
BspANI	GGCC	3 cut(s)	111, 340, 872
BspCNI	CTCAG	2 cut(s)	631, 757
BspLI	GGNNCC	1 cut(s)	576
BspMAI	CTGCAG	1 cut(s)	227
BspPI	GGATC	1 cut(s)	42
BspQI	GCTCTTC	1 cut(s)	997
BspT107I	GGYRCC	1 cut(s)	574
BspTNI	GGTCTC	1 cut(s)	76
BsrFI	RCCGGY	1 cut(s)	111
BssAI	RCCGGY	1 cut(s)	111
BssMI	GATC	4 cut(s)	47, 147, 182, 213
BssNAI	GTATAC	1 cut(s)	899
BssSI	CACGAG	2 cut(s)	36, 723
Bst1107I	GTATAC	1 cut(s)	899
Bst2BI	CACGAG	2 cut(s)	36, 723
Bst4CI	ACNGT	1 cut(s)	606
Bst6I	CTCTTC	2 cut(s)	576, 997
BstAPI	GCANNNNNTGC	1 cut(s)	32
BstC8I	GCNNGC	3 cut(s)	109, 113, 223
BstDEI	CTNAG	3 cut(s)	540, 639, 765
BstF5I	GGATG	3 cut(s)	205, 417, 976
BstHHI	GCGC	2 cut(s)	303, 916
BstKTI	GATC	4 cut(s)	50, 150, 185, 216
BstMAI	GTCTC	1 cut(s)	76
BstMBI	GATC	4 cut(s)	47, 147, 182, 213
BstMWI	GCNNNNNNNGC	6 cut(s)	32, 89, 620, 692, 701, 1016
BstNSI	RCATGY	1 cut(s)	968
BstSCI	CCNGG	1 cut(s)	50
BstSFI	CTRYAG	1 cut(s)	223
BstV1I	GCAGC	3 cut(s)	412, 607, 974
BstXI	CCANNNNNNTGG	2 cut(s)	103, 798
BstZ17I	GTATAC	1 cut(s)	899
BsuRI	GGCC	3 cut(s)	111, 340, 872
BtsCI	GGATG	3 cut(s)	205, 417, 976
BtsIMutI	CAGTG	2 cut(s)	201, 934
Cac8I	GCNNGC	3 cut(s)	109, 113, 223
CaiI	CAGNNNCTG	1 cut(s)	425
CfoI	GCGC	2 cut(s)	303, 916
Cfr10I	RCCGGY	1 cut(s)	111
CseI	GACGC	1 cut(s)	70
Csp6I	GTAC	2 cut(s)	850, 906
CviAII	CATG	6 cut(s)	76, 494, 617, 742, 917, 965
CviQI	GTAC	2 cut(s)	850, 906
DdeI	CTNAG	3 cut(s)	540, 639, 765
DpnI	GATC	4 cut(s)	49, 149, 184, 215
DpnII	GATC	4 cut(s)	47, 147, 182, 213
EaeI	YGGCCR	2 cut(s)	109, 870
Eam1104I	CTCTTC	2 cut(s)	576, 997
EarI	CTCTTC	2 cut(s)	576, 997
EciI	GGCGGA	1 cut(s)	818
Eco31I	GGTCTC	1 cut(s)	76
Eco32I	GATATC	1 cut(s)	925
Eco57I	CTGAAG	3 cut(s)	600, 645, 822
EcoRV	GATATC	1 cut(s)	925
FaeI	CATG	6 cut(s)	79, 497, 620, 745, 920, 968
FatI	CATG	6 cut(s)	75, 493, 616, 741, 916, 964
FauI	CCCGC	1 cut(s)	1012
FbaI	TGATCA	1 cut(s)	147
FblI	GTMKAC	2 cut(s)	6, 898
Fnu4HI	GCNGC	3 cut(s)	426, 621, 988
FokI	GGATG	3 cut(s)	212, 424, 983
Fsp4HI	GCNGC	3 cut(s)	426, 621, 988
FspAI	RTGCGCAY	1 cut(s)	915
FspBI	CTAG	3 cut(s)	276, 344, 689
FspI	TGCGCA	1 cut(s)	915
GlaI	GCGC	2 cut(s)	302, 915
GluI	GCNGC	3 cut(s)	426, 621, 988
GsuI	CTGGAG	1 cut(s)	291
HaeIII	GGCC	3 cut(s)	111, 340, 872
HapII	CCGG	2 cut(s)	52, 112
HgaI	GACGC	1 cut(s)	70
HhaI	GCGC	2 cut(s)	303, 916
Hin1II	CATG	6 cut(s)	79, 497, 620, 745, 920, 968
Hin6I	GCGC	2 cut(s)	301, 914
HinP1I	GCGC	2 cut(s)	301, 914
HindIII	AAGCTT	1 cut(s)	864
HinfI	GANTC	2 cut(s)	55, 125
HpaII	CCGG	2 cut(s)	52, 112
HphI	GGTGA	2 cut(s)	361, 854
Hpy166II	GTNNAC	2 cut(s)	7, 899
Hpy188I	TCNGA	4 cut(s)	47, 60, 130, 766
Hpy188III	TCNNGA	2 cut(s)	254, 557
Hpy8I	GTNNAC	2 cut(s)	7, 899
Hpy99I	CGWCG	1 cut(s)	64
HpyAV	CCTTC	3 cut(s)	97, 330, 589
HpyCH4III	ACNGT	1 cut(s)	606
HpyCH4IV	ACGT	1 cut(s)	852
HpyCH4V	TGCA	5 cut(s)	16, 225, 395, 488, 741
HpyF10VI	GCNNNNNNNGC	6 cut(s)	32, 89, 620, 692, 701, 1016
HpyF3I	CTNAG	3 cut(s)	540, 639, 765
HpySE526I	ACGT	1 cut(s)	852
Hsp92II	CATG	6 cut(s)	79, 497, 620, 745, 920, 968
HspAI	GCGC	2 cut(s)	301, 914
KroI	GCCGGC	1 cut(s)	111
KroNI	GCCGGC	1 cut(s)	113
Ksp22I	TGATCA	1 cut(s)	147
Kzo9I	GATC	4 cut(s)	47, 147, 182, 213
LguI	GCTCTTC	1 cut(s)	997
LmnI	GCTCC	4 cut(s)	272, 308, 692, 1007
Lsp1109I	GCAGC	3 cut(s)	412, 607, 974
LweI	GCATC	3 cut(s)	35, 382, 673
MaeI	CTAG	3 cut(s)	276, 344, 689
MaeII	ACGT	1 cut(s)	852
MalI	GATC	4 cut(s)	49, 149, 184, 215
MboI	GATC	4 cut(s)	47, 147, 182, 213
MboII	GAAGA	6 cut(s)	223, 492, 593, 601, 638, 984
MhlI	GDGCHC	1 cut(s)	37
MlsI	TGGCCA	1 cut(s)	872
MluCI	AATT	5 cut(s)	357, 396, 474, 875, 980
MluNI	TGGCCA	1 cut(s)	872
MmeI	TCCRAC	1 cut(s)	83
MnlI	CCTC	5 cut(s)	277, 565, 732, 887, 998
Mox20I	TGGCCA	1 cut(s)	872
MroNI	GCCGGC	1 cut(s)	111
MscI	TGGCCA	1 cut(s)	872
MseI	TTAA	2 cut(s)	315, 960
MslI	CAYNNNNRTG	3 cut(s)	101, 194, 969
Msp20I	TGGCCA	1 cut(s)	872
MspI	CCGG	2 cut(s)	52, 112
MspR9I	CCNGG	1 cut(s)	52
Mva1269I	GAATGC	1 cut(s)	640
MwoI	GCNNNNNNNGC	6 cut(s)	32, 89, 620, 692, 701, 1016
NaeI	GCCGGC	1 cut(s)	113
NciI	CCSGG	1 cut(s)	52
NdeII	GATC	4 cut(s)	47, 147, 182, 213
NgoMIV	GCCGGC	1 cut(s)	111
NlaIII	CATG	6 cut(s)	79, 497, 620, 745, 920, 968
NlaIV	GGNNCC	1 cut(s)	576
NmeAIII	GCCGAG	1 cut(s)	795
NsbI	TGCGCA	1 cut(s)	915
NspI	RCATGY	1 cut(s)	968
PciI	ACATGT	1 cut(s)	964
PciSI	GCTCTTC	1 cut(s)	997
PcsI	WCGNNNNNNNCGW	1 cut(s)	43
PctI	GAATGC	1 cut(s)	640
PdiI	GCCGGC	1 cut(s)	113
PfeI	GAWTC	2 cut(s)	55, 125
PfoI	TCCNGGA	1 cut(s)	50
PkrI	GCNGC	3 cut(s)	427, 622, 989
PscI	ACATGT	1 cut(s)	964
PshBI	ATTAAT	1 cut(s)	315
PsiI	TTATAA	1 cut(s)	330
PspN4I	GGNNCC	1 cut(s)	576
PstI	CTGCAG	1 cut(s)	227
PstNI	CAGNNNCTG	1 cut(s)	425
RsaI	GTAC	2 cut(s)	851, 907
RsaNI	GTAC	2 cut(s)	850, 906
RseI	CAYNNNNRTG	3 cut(s)	101, 194, 969
SapI	GCTCTTC	1 cut(s)	997
SaqAI	TTAA	2 cut(s)	315, 960
SatI	GCNGC	3 cut(s)	426, 621, 988
Sau3AI	GATC	4 cut(s)	47, 147, 182, 213
SbfI	CCTGCAGG	1 cut(s)	227
ScrFI	CCNGG	1 cut(s)	52
SdaI	CCTGCAGG	1 cut(s)	227
SduI	GDGCHC	1 cut(s)	37
SfaNI	GCATC	3 cut(s)	35, 382, 673
SfcI	CTRYAG	1 cut(s)	223
SmiMI	CAYNNNNRTG	3 cut(s)	101, 194, 969
SmlI	CTYRAG	2 cut(s)	254, 861
SmoI	CTYRAG	2 cut(s)	254, 861
SpeI	ACTAGT	1 cut(s)	343
Sse8387I	CCTGCAGG	1 cut(s)	227
Sse9I	AATT	5 cut(s)	357, 396, 474, 875, 980
SsiI	CCGC	2 cut(s)	829, 1019
SspI	AATATT	1 cut(s)	679
SspMI	CTAG	3 cut(s)	276, 344, 689
StyD4I	CCNGG	1 cut(s)	50
TaaI	ACNGT	1 cut(s)	606
TaiI	ACGT	1 cut(s)	855
TaqI	TCGA	2 cut(s)	29, 159
TasI	AATT	5 cut(s)	357, 396, 474, 875, 980
TfiI	GAWTC	2 cut(s)	55, 125
Tru1I	TTAA	2 cut(s)	315, 960
Tru9I	TTAA	2 cut(s)	315, 960
TscAI	CASTG	2 cut(s)	201, 934
TseI	GCWGC	3 cut(s)	425, 620, 987
TspDTI	ATGAA	6 cut(s)	462, 538, 540, 758, 801, 987
TspGWI	ACGGA	1 cut(s)	893
TspRI	CASTG	2 cut(s)	201, 934
VspI	ATTAAT	1 cut(s)	315
XapI	RAATTY	3 cut(s)	357, 875, 980
XceI	RCATGY	1 cut(s)	968
XmiI	GTMKAC	2 cut(s)	6, 898
XspI	CTAG	3 cut(s)	276, 344, 689

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.