Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0002108

Physical Location & Seq

Genomic Coordinates Forward (+)

20045330 .. 20048176

Gene Structure 2847 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g22450.10

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1029 bp

ATGCACAGCAGGGGTTCAAGTGCTCGTCTCTCCGGCACCGTTTTCCGATCTCGGATTCCGACCCTCTTGGTCTCCATGTTCGCCACTTTCGCCTCCATCTATATCGCCGGCCGGCTGTGGCAGGATTCGGAGAGCAGGGTTTATTTGATCAAAGAACTTGATAGGATTACTGGGCAGGGGCGATCCGTCATATCAGTGGATGATACATTGAAAATCATAGCCTGCAGGGAACAACATAAGAAGTTATCAGCGCTTGAGATGGAGTTGACTGCAGCTAGACAAGAGGGTTTTTCTTTGGGGCGCTCAACAGAGATTAATGGAACTGATTACAAGAGAAGGCCACTAGTGGTGATTGGTATTCTTACAACCTTTGGTCGCAAAAGTAATAGGGACGCAATTCGTCAGGCGTGGATGGGAACAGGTGCTGCCTTGAAAAAAATGGAGAATGAGAAGGGAATAGTTGCTCGATTTGTTATTGGACGAAGCGCAAATCCTGGGGATAGCTTGGACAGAGCCATTGACAACGAAAACAGGCAAACTAAGGACTTCATTATTCTTGATACCCATGTAGAGGCACCTAAAGAGTTCCCAAAGAAGACTAAATTGTTCTTCGCTCATGCTGCTGAAAAATGGAATGCTGAGTTTTACTCCAAAGTCAACGACGATGTTTATGTAAATATTGATGCTCTGGGAGCTACACTTGCAACTCATCTAGACAAACCTCGTGTTTATATGGGGTGCATGAAATCAGGCGAAGTTTTCTCTGAGCCGAGCCAAAAATGGTATGAACCAGAATGGTGGAAGTTTGGGGATAGAAAATCATATTTCCGCCACGCTTCAGGTGAGATGTACGTCATATCGCAAGCTTTGGCCAAATTTGTTTCAATCAATAGAGGTATACTCCATACTTATGCCCACGATGATATCAGTGTCGGATCTTGGTTTATTGGGGTTGATGTTAAACACGTAGATGAAGCCAAGTTTTGTTGCTCCTCTTGGGCGGGAGGAGCTATTTGTGCCGGTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0006029 GO:0006464 GO:0006486 GO:0006493 GO:0006807 GO:0008150 GO:0008152 GO:0008378 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0010384 GO:0010404 GO:0010405 GO:0012505 GO:0016740 GO:0016757 GO:0016758 GO:0018193 GO:0018208 GO:0018258 GO:0019538 GO:0031410 GO:0031982 GO:0031984 GO:0034645 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044036 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0070085 GO:0071554 GO:0071704 GO:0097708 GO:0098791 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1990714

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4094 Galactosyl_T

Protein Analysis

343

Amino Acids

38.41

Weight (kDa)

9.14

Isoelectric Point (pI)

35.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002108)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G53340 AT5G53340
fragaria_vesca	FvH4_5g03830 FvH4_5g03830 FvH4_5g03830 FvH4_5g03830 FvH4_5g03830 FvH4_5g03830 FvH4_5g03830 FvH4_7g30880 FvH4_7g30880 FvH4_7g30880 FvH4_7g30880 FvH4_7g30880
malus_domestica	MD01G1213800.v1.1 MD06G1099700.v1.1 MD07G1283500.v1.1 MD14G1119400.v1.1
prunus_persica	Prupe.2G305900_v2.0.a1 Prupe.5G113400_v2.0.a1 Prupe.5G113400_v2.0.a1
pyrus_communis	pycom01g22450 pycom06g09500 pycom07g25760
rosa_chinensis	RchiOBHm_Chr1g0379951 RchiOBHm_Chr7g0195671
rosa_laevigata	RLG00000026346
rosa_multiflora	Rmu_sc0003314.1_g000015 Rmu_sc0004184.1_g000018 Rmu_sc0016754.1_g000001 Rmu_sc0035510.1_g000001
rosa_roxburghii	Rroxscaffold_3G00260230 Rroxscaffold_4G00279830
rosa_rugosa	Rorug01G0415900 Rorug07G0025600
rosa_samantha	Rh1AG440400 Rh1BG396200 Rh1DG427000 Rh7AG153400 Rh7BG154600 Rh7CG158600 Rh7CG158700
rosa_wichuraiana	Rw1G038290 Rw7G013100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	35, 574
AccI	GTMKAC	1 cut(s)	898
AciI	CCGC	2 cut(s)	829, 1001
AclWI	GGATC	2 cut(s)	177, 943
AcoI	YGGCCR	2 cut(s)	109, 870
AcsI	RAATTY	1 cut(s)	875
AcuI	CTGAAG	1 cut(s)	822
AfaI	GTAC	1 cut(s)	851
AfeI	AGCGCT	1 cut(s)	252
AfiI	CCNNNNNNNGG	1 cut(s)	571
AflIII	ACRYGT	1 cut(s)	964
AgsI	TTSAA	4 cut(s)	18, 211, 433, 885
AhlI	ACTAGT	1 cut(s)	343
AjnI	CCWGG	1 cut(s)	493
AluBI	AGCT	5 cut(s)	275, 504, 695, 866, 1010
AluI	AGCT	5 cut(s)	275, 504, 695, 866, 1010
Alw21I	GWGCWC	1 cut(s)	25
Alw26I	GTCTC	2 cut(s)	32, 76
AlwI	GGATC	2 cut(s)	177, 943
AlwNI	CAGNNNCTG	1 cut(s)	425
Aor51HI	AGCGCT	1 cut(s)	252
AoxI	GGCC	3 cut(s)	109, 338, 870
ApeKI	GCWGC	3 cut(s)	272, 425, 620
ApoI	RAATTY	1 cut(s)	875
AseI	ATTAAT	1 cut(s)	315
AspLEI	GCGC	3 cut(s)	253, 303, 488
AsuHPI	GGTGA	2 cut(s)	361, 854
BaeI	ACNNNNGTAYC	2 cut(s)	552, 585
BalI	TGGCCA	1 cut(s)	872
BanI	GGYRCC	2 cut(s)	35, 574
BauI	CACGAG	1 cut(s)	723
BbsI	GAAGAC	1 cut(s)	602
Bbv12I	GWGCWC	1 cut(s)	25
BbvI	GCAGC	3 cut(s)	284, 412, 607
BccI	CCATC	3 cut(s)	104, 253, 406
BciT130I	CCWGG	1 cut(s)	495
BclI	TGATCA	1 cut(s)	147
BcoDI	GTCTC	2 cut(s)	32, 76
BcuI	ACTAGT	1 cut(s)	343
BfaI	CTAG	3 cut(s)	276, 344, 713
BfmI	CTRYAG	2 cut(s)	223, 270
BfoI	RGCGCY	2 cut(s)	254, 304
BisI	GCNGC	3 cut(s)	273, 426, 621
BlsI	GCNGC	3 cut(s)	274, 427, 622
Bme1390I	CCNGG	1 cut(s)	495
BmiI	GGNNCC	2 cut(s)	37, 576
BmrFI	CCNGG	1 cut(s)	495
BmrI	ACTGGG	1 cut(s)	180
BmsI	GCATC	1 cut(s)	673
BmuI	ACTGGG	1 cut(s)	180
BpiI	GAAGAC	1 cut(s)	602
BplI	GAGNNNNNCTC	4 cut(s)	632, 664, 885, 917
BpuEI	CTTGAG	1 cut(s)	275
BsaAI	YACGTR	1 cut(s)	967
BsaI	GGTCTC	1 cut(s)	76
BsaJI	CCNNGG	1 cut(s)	494
Bsc4I	CCNNNNNNNGG	1 cut(s)	571
Bse118I	RCCGGY	3 cut(s)	107, 111, 1019
Bse1I	ACTGG	1 cut(s)	175
BseBI	CCWGG	1 cut(s)	495
BseDI	CCNNGG	1 cut(s)	494
BseGI	GGATG	2 cut(s)	205, 417
BseLI	CCNNNNNNNGG	1 cut(s)	571
BseMII	CTCAG	2 cut(s)	630, 756
BseNI	ACTGG	1 cut(s)	175
BseRI	GAGGAG	2 cut(s)	982, 1020
BseX3I	CGGCCG	1 cut(s)	109
BseXI	GCAGC	3 cut(s)	284, 412, 607
Bsh1285I	CGRYCG	1 cut(s)	112
BshFI	GGCC	3 cut(s)	111, 340, 872
BshNI	GGYRCC	2 cut(s)	35, 574
BsiEI	CGRYCG	1 cut(s)	112
BsiHKAI	GWGCWC	1 cut(s)	25
BsiSI	CCGG	4 cut(s)	33, 108, 112, 1020
BslFI	GGGAC	1 cut(s)	404
BslI	CCNNNNNNNGG	1 cut(s)	571
BsmAI	GTCTC	2 cut(s)	32, 76
BsmBI	CGTCTC	1 cut(s)	32
BsmFI	GGGAC	1 cut(s)	404
BsmI	GAATGC	1 cut(s)	640
BsnI	GGCC	3 cut(s)	111, 340, 872
Bso31I	GGTCTC	1 cut(s)	76
Bsp1286I	GDGCHC	1 cut(s)	25
Bsp143I	GATC	4 cut(s)	47, 147, 182, 935
BspACI	CCGC	2 cut(s)	829, 1001
BspANI	GGCC	3 cut(s)	111, 340, 872
BspCNI	CTCAG	2 cut(s)	631, 757
BspLI	GGNNCC	2 cut(s)	37, 576
BspMAI	CTGCAG	2 cut(s)	227, 274
BspPI	GGATC	2 cut(s)	177, 943
BspT107I	GGYRCC	2 cut(s)	35, 574
BspTNI	GGTCTC	1 cut(s)	76
BsrFI	RCCGGY	3 cut(s)	107, 111, 1019
BsrI	ACTGG	1 cut(s)	175
BssAI	RCCGGY	3 cut(s)	107, 111, 1019
BssECI	CCNNGG	1 cut(s)	494
BssMI	GATC	4 cut(s)	47, 147, 182, 935
BssNAI	GTATAC	1 cut(s)	899
BssSI	CACGAG	1 cut(s)	723
Bst1107I	GTATAC	1 cut(s)	899
Bst2BI	CACGAG	1 cut(s)	723
Bst2UI	CCWGG	1 cut(s)	495
Bst4CI	ACNGT	1 cut(s)	40
BstBAI	YACGTR	1 cut(s)	967
BstC8I	GCNNGC	4 cut(s)	109, 113, 223, 864
BstDEI	CTNAG	3 cut(s)	540, 639, 765
BstF5I	GGATG	2 cut(s)	205, 417
BstH2I	RGCGCY	2 cut(s)	254, 304
BstHHI	GCGC	3 cut(s)	253, 303, 488
BstKTI	GATC	4 cut(s)	50, 150, 185, 938
BstMAI	GTCTC	2 cut(s)	32, 76
BstMBI	GATC	4 cut(s)	47, 147, 182, 935
BstMCI	CGRYCG	1 cut(s)	112
BstMWI	GCNNNNNNNGC	6 cut(s)	89, 620, 692, 701, 1007, 1016
BstNI	CCWGG	1 cut(s)	495
BstSCI	CCNGG	1 cut(s)	493
BstSFI	CTRYAG	2 cut(s)	223, 270
BstV1I	GCAGC	3 cut(s)	284, 412, 607
BstV2I	GAAGAC	1 cut(s)	602
BstX2I	RGATCY	1 cut(s)	935
BstXI	CCANNNNNNTGG	1 cut(s)	798
BstYI	RGATCY	1 cut(s)	935
BstZ17I	GTATAC	1 cut(s)	899
BstZI	CGGCCG	1 cut(s)	109
BsuRI	GGCC	3 cut(s)	111, 340, 872
BtsCI	GGATG	2 cut(s)	205, 417
BtsIMutI	CAGTG	2 cut(s)	201, 934
Cac8I	GCNNGC	4 cut(s)	109, 113, 223, 864
CaiI	CAGNNNCTG	1 cut(s)	425
CfoI	GCGC	3 cut(s)	253, 303, 488
Cfr10I	RCCGGY	3 cut(s)	107, 111, 1019
CseI	GACGC	1 cut(s)	401
Csp6I	GTAC	1 cut(s)	850
CviAII	CATG	4 cut(s)	76, 566, 617, 742
CviQI	GTAC	1 cut(s)	850
DdeI	CTNAG	3 cut(s)	540, 639, 765
DpnI	GATC	4 cut(s)	49, 149, 184, 937
DpnII	GATC	4 cut(s)	47, 147, 182, 935
EaeI	YGGCCR	2 cut(s)	109, 870
EagI	CGGCCG	1 cut(s)	109
EciI	GGCGGA	1 cut(s)	818
EclXI	CGGCCG	1 cut(s)	109
Eco31I	GGTCTC	1 cut(s)	76
Eco32I	GATATC	1 cut(s)	925
Eco47III	AGCGCT	1 cut(s)	252
Eco52I	CGGCCG	1 cut(s)	109
Eco57I	CTGAAG	1 cut(s)	822
EcoRII	CCWGG	1 cut(s)	493
EcoRV	GATATC	1 cut(s)	925
Esp3I	CGTCTC	1 cut(s)	32
FaeI	CATG	4 cut(s)	79, 569, 620, 745
FaqI	GGGAC	1 cut(s)	404
FatI	CATG	4 cut(s)	75, 565, 616, 741
FauI	CCCGC	1 cut(s)	994
FbaI	TGATCA	1 cut(s)	147
FblI	GTMKAC	1 cut(s)	898
Fnu4HI	GCNGC	3 cut(s)	273, 426, 621
FokI	GGATG	2 cut(s)	212, 424
Fsp4HI	GCNGC	3 cut(s)	273, 426, 621
FspBI	CTAG	3 cut(s)	276, 344, 713
GlaI	GCGC	3 cut(s)	252, 302, 487
GluI	GCNGC	3 cut(s)	273, 426, 621
HaeII	RGCGCY	2 cut(s)	254, 304
HaeIII	GGCC	3 cut(s)	111, 340, 872
HapII	CCGG	4 cut(s)	33, 108, 112, 1020
HgaI	GACGC	1 cut(s)	401
HhaI	GCGC	3 cut(s)	253, 303, 488
Hin1II	CATG	4 cut(s)	79, 569, 620, 745
Hin6I	GCGC	3 cut(s)	251, 301, 486
HinP1I	GCGC	3 cut(s)	251, 301, 486
HincII	GTYRAC	2 cut(s)	267, 658
HindII	GTYRAC	2 cut(s)	267, 658
HindIII	AAGCTT	1 cut(s)	864
HinfI	GANTC	2 cut(s)	55, 125
HpaII	CCGG	4 cut(s)	33, 108, 112, 1020
HphI	GGTGA	2 cut(s)	361, 854
Hpy166II	GTNNAC	3 cut(s)	267, 658, 899
Hpy188I	TCNGA	6 cut(s)	47, 54, 60, 130, 766, 935
Hpy188III	TCNNGA	2 cut(s)	557, 713
Hpy8I	GTNNAC	3 cut(s)	267, 658, 899
Hpy99I	CGWCG	1 cut(s)	665
HpyAV	CCTTC	2 cut(s)	330, 445
HpyCH4III	ACNGT	1 cut(s)	40
HpyCH4IV	ACGT	2 cut(s)	852, 966
HpyCH4V	TGCA	5 cut(s)	4, 225, 272, 704, 741
HpyF10VI	GCNNNNNNNGC	6 cut(s)	89, 620, 692, 701, 1007, 1016
HpyF3I	CTNAG	3 cut(s)	540, 639, 765
HpySE526I	ACGT	2 cut(s)	852, 966
Hsp92II	CATG	4 cut(s)	79, 569, 620, 745
HspAI	GCGC	3 cut(s)	251, 301, 486
KroI	GCCGGC	2 cut(s)	107, 111
KroNI	GCCGGC	2 cut(s)	109, 113
Ksp22I	TGATCA	1 cut(s)	147
Kzo9I	GATC	4 cut(s)	47, 147, 182, 935
LmnI	GCTCC	3 cut(s)	692, 995, 1007
Lsp1109I	GCAGC	3 cut(s)	284, 412, 607
LweI	GCATC	1 cut(s)	673
MaeI	CTAG	3 cut(s)	276, 344, 713
MaeII	ACGT	2 cut(s)	852, 966
MalI	GATC	4 cut(s)	49, 149, 184, 937
MboI	GATC	4 cut(s)	47, 147, 182, 935
MboII	GAAGA	2 cut(s)	601, 607
MflI	RGATCY	1 cut(s)	935
MhlI	GDGCHC	1 cut(s)	25
MlsI	TGGCCA	1 cut(s)	872
MluCI	AATT	3 cut(s)	396, 602, 875
MluNI	TGGCCA	1 cut(s)	872
MmeI	TCCRAC	2 cut(s)	83, 913
MnlI	CCTC	8 cut(s)	74, 103, 277, 565, 732, 887, 998, 1003
Mox20I	TGGCCA	1 cut(s)	872
MroNI	GCCGGC	2 cut(s)	107, 111
MscI	TGGCCA	1 cut(s)	872
MseI	TTAA	2 cut(s)	315, 960
MslI	CAYNNNNRTG	3 cut(s)	194, 909, 969
Msp20I	TGGCCA	1 cut(s)	872
MspI	CCGG	4 cut(s)	33, 108, 112, 1020
MspR9I	CCNGG	1 cut(s)	495
Mva1269I	GAATGC	1 cut(s)	640
MvaI	CCWGG	1 cut(s)	495
MwoI	GCNNNNNNNGC	6 cut(s)	89, 620, 692, 701, 1007, 1016
NaeI	GCCGGC	2 cut(s)	109, 113
NdeII	GATC	4 cut(s)	47, 147, 182, 935
NgoMIV	GCCGGC	2 cut(s)	107, 111
NlaIII	CATG	4 cut(s)	79, 569, 620, 745
NlaIV	GGNNCC	2 cut(s)	37, 576
NmeAIII	GCCGAG	1 cut(s)	795
PctI	GAATGC	1 cut(s)	640
PdiI	GCCGGC	2 cut(s)	109, 113
PfeI	GAWTC	2 cut(s)	55, 125
PkrI	GCNGC	3 cut(s)	274, 427, 622
Ppu21I	YACGTR	1 cut(s)	967
PshBI	ATTAAT	1 cut(s)	315
Psp6I	CCWGG	1 cut(s)	493
PspGI	CCWGG	1 cut(s)	493
PspN4I	GGNNCC	2 cut(s)	37, 576
PstI	CTGCAG	2 cut(s)	227, 274
PstNI	CAGNNNCTG	1 cut(s)	425
PsuI	RGATCY	1 cut(s)	935
RsaI	GTAC	1 cut(s)	851
RsaNI	GTAC	1 cut(s)	850
RseI	CAYNNNNRTG	3 cut(s)	194, 909, 969
SaqAI	TTAA	2 cut(s)	315, 960
SatI	GCNGC	3 cut(s)	273, 426, 621
Sau3AI	GATC	4 cut(s)	47, 147, 182, 935
SbfI	CCTGCAGG	1 cut(s)	227
ScrFI	CCNGG	1 cut(s)	495
SdaI	CCTGCAGG	1 cut(s)	227
SduI	GDGCHC	1 cut(s)	25
SfaNI	GCATC	1 cut(s)	673
SfcI	CTRYAG	2 cut(s)	223, 270
SmiMI	CAYNNNNRTG	3 cut(s)	194, 909, 969
SmlI	CTYRAG	1 cut(s)	254
SmoI	CTYRAG	1 cut(s)	254
SpeI	ACTAGT	1 cut(s)	343
Sse8387I	CCTGCAGG	1 cut(s)	227
Sse9I	AATT	3 cut(s)	396, 602, 875
SsiI	CCGC	2 cut(s)	829, 1001
SspI	AATATT	1 cut(s)	679
SspMI	CTAG	3 cut(s)	276, 344, 713
StyD4I	CCNGG	1 cut(s)	493
TaaI	ACNGT	1 cut(s)	40
TaiI	ACGT	2 cut(s)	855, 969
TaqI	TCGA	1 cut(s)	466
TasI	AATT	3 cut(s)	396, 602, 875
TfiI	GAWTC	2 cut(s)	55, 125
Tru1I	TTAA	2 cut(s)	315, 960
Tru9I	TTAA	2 cut(s)	315, 960
TscAI	CASTG	2 cut(s)	201, 934
TseI	GCWGC	3 cut(s)	272, 425, 620
TspDTI	ATGAA	4 cut(s)	538, 758, 801, 987
TspGWI	ACGGA	1 cut(s)	175
TspRI	CASTG	2 cut(s)	201, 934
VspI	ATTAAT	1 cut(s)	315
XapI	RAATTY	1 cut(s)	875
XbaI	TCTAGA	1 cut(s)	712
XmiI	GTMKAC	1 cut(s)	898
XspI	CTAG	3 cut(s)	276, 344, 713

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.