Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0016754.1

Orthogroup ID

OG0002108

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 720

Gene Structure 719 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0016754.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 380 bp

atgcatggccggccatcgcagaaccggctatcgtcttttcagtcgagaatttcagctctcctcctcgccatgctctccaccatggccgtaatttacgtcgccggccgtctgtggcaggatgctgaagatagggtttatttgattaaggaaattgataaaagaaatagtcagagtcgctctgctatatctgtggacgatacgcttaagattatagcttgcagggagcaacagaagaagttgtccgccgtagagatggaactggctgcagcaaggaaagaagggtttgttccaaagagctcgtcgaaaaatgagaaggatgattctaagaagaagcttctagcagttgtaggaattttcacaacgtttggtcgcaataaaaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0006029 GO:0006464 GO:0006486 GO:0006493 GO:0006807 GO:0008150 GO:0008152 GO:0008378 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0010384 GO:0010404 GO:0010405 GO:0012505 GO:0016740 GO:0016757 GO:0016758 GO:0018193 GO:0018208 GO:0018258 GO:0019538 GO:0031410 GO:0031982 GO:0031984 GO:0034645 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044036 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0070085 GO:0071554 GO:0071704 GO:0097708 GO:0098791 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1990714

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4094 Galactosyl_T

Protein Analysis

126

Amino Acids

14.15

Weight (kDa)

9.94

Isoelectric Point (pI)

53.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002108)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G53340 AT5G53340
fragaria_vesca	FvH4_5g03830 FvH4_5g03830 FvH4_5g03830 FvH4_5g03830 FvH4_5g03830 FvH4_5g03830 FvH4_5g03830 FvH4_7g30880 FvH4_7g30880 FvH4_7g30880 FvH4_7g30880 FvH4_7g30880
malus_domestica	MD01G1213800.v1.1 MD06G1099700.v1.1 MD07G1283500.v1.1 MD14G1119400.v1.1
prunus_persica	Prupe.2G305900_v2.0.a1 Prupe.5G113400_v2.0.a1 Prupe.5G113400_v2.0.a1
pyrus_communis	pycom01g22450 pycom06g09500 pycom07g25760
rosa_chinensis	RchiOBHm_Chr1g0379951 RchiOBHm_Chr7g0195671
rosa_laevigata	RLG00000026346
rosa_multiflora	Rmu_sc0003314.1_g000015 Rmu_sc0004184.1_g000018 Rmu_sc0016754.1_g000001 Rmu_sc0035510.1_g000001
rosa_roxburghii	Rroxscaffold_3G00260230 Rroxscaffold_4G00279830
rosa_rugosa	Rorug01G0415900 Rorug07G0025600
rosa_samantha	Rh1AG440400 Rh1BG396200 Rh1DG427000 Rh7AG153400 Rh7BG154600 Rh7CG158600 Rh7CG158700
rosa_wichuraiana	Rw1G038290 Rw7G013100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	243
AclI	AACGTT	1 cut(s)	362
AcoI	YGGCCR	4 cut(s)	7, 11, 84, 103
AcsI	RAATTY	2 cut(s)	48, 351
AcuI	CTGAAG	1 cut(s)	144
AflII	CTTAAG	1 cut(s)	203
AluBI	AGCT	4 cut(s)	56, 215, 297, 334
AluI	AGCT	4 cut(s)	56, 215, 297, 334
Alw21I	GWGCWC	1 cut(s)	299
AoxI	GGCC	4 cut(s)	7, 11, 84, 103
ApeKI	GCWGC	2 cut(s)	263, 266
ApoI	RAATTY	2 cut(s)	48, 351
ArsI	GACNNNNNNTTYG	2 cut(s)	284, 316
BanII	GRGCYC	1 cut(s)	299
Bbv12I	GWGCWC	1 cut(s)	299
BbvI	GCAGC	2 cut(s)	250, 278
BccI	CCATC	2 cut(s)	22, 247
BceAI	ACGGC	3 cut(s)	71, 90, 230
BfaI	CTAG	1 cut(s)	338
BfmI	CTRYAG	1 cut(s)	264
BfrI	CTTAAG	1 cut(s)	203
BisI	GCNGC	2 cut(s)	264, 267
BlsI	GCNGC	2 cut(s)	265, 268
BmsI	GCATC	1 cut(s)	109
BsaJI	CCNNGG	1 cut(s)	81
Bse118I	RCCGGY	3 cut(s)	9, 24, 101
Bse1I	ACTGG	1 cut(s)	264
BseDI	CCNNGG	1 cut(s)	81
BseGI	GGATG	2 cut(s)	124, 322
BseNI	ACTGG	1 cut(s)	264
BseRI	GAGGAG	2 cut(s)	50, 53
BseX3I	CGGCCG	1 cut(s)	103
BseXI	GCAGC	2 cut(s)	250, 278
Bsh1285I	CGRYCG	1 cut(s)	106
BshFI	GGCC	4 cut(s)	9, 13, 86, 105
BsiEI	CGRYCG	1 cut(s)	106
BsiHKAI	GWGCWC	1 cut(s)	299
BsiSI	CCGG	3 cut(s)	10, 25, 102
BsnI	GGCC	4 cut(s)	9, 13, 86, 105
Bsp1286I	GDGCHC	1 cut(s)	299
Bsp19I	CCATGG	1 cut(s)	81
BspACI	CCGC	1 cut(s)	243
BspANI	GGCC	4 cut(s)	9, 13, 86, 105
BspMAI	CTGCAG	1 cut(s)	268
BspTI	CTTAAG	1 cut(s)	203
BsrFI	RCCGGY	3 cut(s)	9, 24, 101
BsrI	ACTGG	1 cut(s)	264
BssAI	RCCGGY	3 cut(s)	9, 24, 101
BssECI	CCNNGG	1 cut(s)	81
BssT1I	CCWWGG	1 cut(s)	81
BstAFI	CTTAAG	1 cut(s)	203
BstC8I	GCNNGC	3 cut(s)	11, 103, 217
BstDEI	CTNAG	1 cut(s)	324
BstDSI	CCRYGG	1 cut(s)	81
BstF5I	GGATG	2 cut(s)	124, 322
BstMCI	CGRYCG	1 cut(s)	106
BstMWI	GCNNNNNNNGC	2 cut(s)	10, 25
BstSFI	CTRYAG	1 cut(s)	264
BstV1I	GCAGC	2 cut(s)	250, 278
BstZI	CGGCCG	1 cut(s)	103
BsuRI	GGCC	4 cut(s)	9, 13, 86, 105
BtgI	CCRYGG	1 cut(s)	81
BtsCI	GGATG	2 cut(s)	124, 322
Cac8I	GCNNGC	3 cut(s)	11, 103, 217
Cfr10I	RCCGGY	3 cut(s)	9, 24, 101
CviAII	CATG	3 cut(s)	5, 70, 82
DdeI	CTNAG	1 cut(s)	324
EaeI	YGGCCR	4 cut(s)	7, 11, 84, 103
EagI	CGGCCG	1 cut(s)	103
EciI	GGCGGA	1 cut(s)	232
Ecl136II	GAGCTC	1 cut(s)	297
EclXI	CGGCCG	1 cut(s)	103
Eco130I	CCWWGG	1 cut(s)	81
Eco24I	GRGCYC	1 cut(s)	299
Eco52I	CGGCCG	1 cut(s)	103
Eco53kI	GAGCTC	1 cut(s)	297
Eco57I	CTGAAG	1 cut(s)	144
EcoICRI	GAGCTC	1 cut(s)	297
EcoT14I	CCWWGG	1 cut(s)	81
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	299
ErhI	CCWWGG	1 cut(s)	81
FaeI	CATG	3 cut(s)	8, 73, 85
FaiI	YATR	5 cut(s)	6, 71, 83, 185, 212
FatI	CATG	3 cut(s)	4, 69, 81
Fnu4HI	GCNGC	2 cut(s)	264, 267
FokI	GGATG	2 cut(s)	131, 329
FriOI	GRGCYC	1 cut(s)	299
FseI	GGCCGGCC	1 cut(s)	13
Fsp4HI	GCNGC	2 cut(s)	264, 267
FspBI	CTAG	1 cut(s)	338
GluI	GCNGC	2 cut(s)	264, 267
HaeIII	GGCC	4 cut(s)	9, 13, 86, 105
HapII	CCGG	3 cut(s)	10, 25, 102
Hin1II	CATG	3 cut(s)	8, 73, 85
HindIII	AAGCTT	1 cut(s)	332
HinfI	GANTC	2 cut(s)	172, 320
HpaII	CCGG	3 cut(s)	10, 25, 102
Hpy166II	GTNNAC	1 cut(s)	193
Hpy188I	TCNGA	1 cut(s)	171
Hpy188III	TCNNGA	1 cut(s)	45
Hpy8I	GTNNAC	1 cut(s)	193
Hpy99I	CGWCG	2 cut(s)	101, 304
HpyAV	CCTTC	2 cut(s)	272, 307
HpyCH4IV	ACGT	2 cut(s)	96, 362
HpyCH4V	TGCA	3 cut(s)	4, 219, 266
HpyF10VI	GCNNNNNNNGC	2 cut(s)	10, 25
HpyF3I	CTNAG	1 cut(s)	324
HpySE526I	ACGT	2 cut(s)	96, 362
Hsp92II	CATG	3 cut(s)	8, 73, 85
KroI	GCCGGC	2 cut(s)	9, 101
KroNI	GCCGGC	2 cut(s)	11, 103
LmnI	GCTCC	1 cut(s)	223
LpnPI	CCDG	6 cut(s)	23, 38, 101, 115, 205, 245
Lsp1109I	GCAGC	2 cut(s)	250, 278
LweI	GCATC	1 cut(s)	109
MaeI	CTAG	1 cut(s)	338
MaeII	ACGT	2 cut(s)	96, 362
MboII	GAAGA	3 cut(s)	137, 244, 340
MhlI	GDGCHC	1 cut(s)	299
MluCI	AATT	4 cut(s)	48, 90, 150, 351
MlyI	GAGTC	1 cut(s)	181
MnlI	CCTC	2 cut(s)	71, 74
Mph1103I	ATGCAT	1 cut(s)	6
MroNI	GCCGGC	2 cut(s)	9, 101
MseI	TTAA	2 cut(s)	144, 204
MspCI	CTTAAG	1 cut(s)	203
MspI	CCGG	3 cut(s)	10, 25, 102
MwoI	GCNNNNNNNGC	2 cut(s)	10, 25
NaeI	GCCGGC	2 cut(s)	11, 103
NcoI	CCATGG	1 cut(s)	81
NgoMIV	GCCGGC	2 cut(s)	9, 101
NlaIII	CATG	3 cut(s)	8, 73, 85
NsiI	ATGCAT	1 cut(s)	6
PdiI	GCCGGC	2 cut(s)	11, 103
PfeI	GAWTC	1 cut(s)	320
PkrI	GCNGC	2 cut(s)	265, 268
PleI	GAGTC	1 cut(s)	180
PpsI	GAGTC	1 cut(s)	180
Psp124BI	GAGCTC	1 cut(s)	299
Psp1406I	AACGTT	1 cut(s)	362
PstI	CTGCAG	1 cut(s)	268
RigI	GGCCGGCC	1 cut(s)	13
SacI	GAGCTC	1 cut(s)	299
SaqAI	TTAA	2 cut(s)	144, 204
SatI	GCNGC	2 cut(s)	264, 267
SchI	GAGTC	1 cut(s)	181
SduI	GDGCHC	1 cut(s)	299
SetI	ASST	6 cut(s)	58, 99, 217, 299, 336, 365
SfaNI	GCATC	1 cut(s)	109
SfcI	CTRYAG	1 cut(s)	264
SmlI	CTYRAG	1 cut(s)	203
SmoI	CTYRAG	1 cut(s)	203
Sse9I	AATT	4 cut(s)	48, 90, 150, 351
SsiI	CCGC	1 cut(s)	243
SspMI	CTAG	1 cut(s)	338
SstI	GAGCTC	1 cut(s)	299
StyI	CCWWGG	1 cut(s)	81
TaiI	ACGT	2 cut(s)	99, 365
TaqI	TCGA	2 cut(s)	44, 302
TasI	AATT	4 cut(s)	48, 90, 150, 351
TfiI	GAWTC	1 cut(s)	320
Tru1I	TTAA	2 cut(s)	144, 204
Tru9I	TTAA	2 cut(s)	144, 204
TseI	GCWGC	2 cut(s)	263, 266
Vha464I	CTTAAG	1 cut(s)	203
XapI	RAATTY	2 cut(s)	48, 351
XspI	CTAG	1 cut(s)	338
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.