Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0002108

Physical Location & Seq

Genomic Coordinates Forward (+)

51906475 .. 51911967

Gene Structure 5493 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0415900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3330 bp

ATGAGAATAAAGTGGACTACAAAACTCCACTGTTCCAGTTTGATTAAAAGGTACTTTACTAGTAGTGATATGGCGGAGGAAGGCGGGAAGAGCTTTGCCAGGAGAGACCGGCTTCTAGAGATCGAGGCAAAGGCTCGAAACTGGTGGGAGGAGAAACAAGTTTTCAGGGCAGAGTCTTGTGAGAAGCCTCCCGGACCAGGGGAGAAGTTCTTTGGAAACTTCCCCTTCCCTTATATGAATGGTTTTCTGCATCTCGGACATGCTTTTTCACTCTCGAAGCTGGAGTTTGCTGCGGCCTATCAGAGATTGAGAGGCGCAAATGTGCTCCTGCCTTTTGCTTTTCACTGTACTGGCATGCCCATCAAGGCCTCAGCTGATAAGCTTACTAGGGAGATTCAACAGTTTGGAGAACCTCCTGTTTTTCCCGAAAAAGTGGAGAAGGGGAACGAGGAAGTGGAAGTGGAAGCCGAGGATGTCAATGCAGGTGCACCTCCAGCCAAGCATAAGGGAAAGAAGTCGAAGGCTGCATCAAAATCAGGCGGCGAAGTGTACCAATGGGAAATTATGCGAAGCTTTGGCCTCTCCGACAGTGACATATCCAAATTTCAGGATCCTTATAAGTGGTTGACTTATTTTCCCCCATTGGCAGTGGAGGACCTCAAGGCTTTTGGCCTAGGCTGTGACTGGAGACGTTCCTTTATTACTACAGACATGAATCCTTTTTTCGACACCTTTGTGAGGTGGCAGGTTAGGAAACTGAAATCCATGGGCAAGATTGTCAAAGATCTCCGTTACACGATATACTCTCCGATGGATGGGCAACCCTGTGCAGATCATGATAGGTCCAGTGGTGAAGGAGTTCAGCCTCAAGAATACACTGTCATCAAAATGGAACTGATGGCACCTTTCCCTTCTAAATTGGGAGTGTTGGAGGGGAGGAAAGTGTTCCTTGCTGCAGCAACACTGAGACCTGAGACCATGTATGGACAAACAAATGCATGGGTATTGCCTGATGGTAAGTACGGTGCCTTTGAAATCAATGAAACAGATGTGTTTATTCTTACTCAGAGAGCAGCACGTAATCTTGCTTATCAAAAGTACTCTAGGGTCCCAGAGAAACCTACTTGCTTGGTTGAACTGACTGGTTATGATTTGATTGGCCTTCCATTAAAGTCGCCACTAGCACTGAATGAGATTATTTATGCTCTTCCTATGTTGACTGTCCTAACAGACAAAGGTACTGGGATTGTGACCAGTGTACCTACTGATTCTCCAGATGATTATATGGCCTTGCATGACTTGAAATCAAAACCTGCTTTTAGGGCAAAATATGGTGTGAAAGATGAGTGGGTACTGCCCTTTGAGAATATCCCAATCATTGATATTCCAGGATTTGGAAATAATGCTGCGGAAAAGGTCTGTGCAGATCTCAAGATCAAAAGCCAGAATGAGAAAGAGAAGCTAGCAGAAGCCAAGAGGTTGACATACTTGAAAGGATTCAATGAAGGAACACTGATTGTGGGGGAGTTTAAGGGAAGGAAAGTCCAGGAGGTTAAACCCTTGATAAGGAGCAAGCTTATAGAGGCGGGGGAGGCAATATCATATAGTGAACCTGAGAAGCGAGTACTATCAAGATCAGGTGATGAATGTGTTGTTGCGCTTACAGATCAATGGTACATCACATACGGGGAAACTGAATGGAAAAAACTGGCGGAAGAGTGCTTGTCCGGCATGAGTTTGTATTCTGATGAGACACGGCATGGATTTGAACACACATTGAGCTGGTTGAATCAGTGGGCTTGTTCACGATCTTTTGGTCTTGGGACTCGCATCCCCTGGGATGAAGAATTCTTAGTTGAGTCATTGTCTGATTCAACTATTTACATGGCTTATTACACCATTGCTCACTTCCTACACAATGGAGACATGTATGGTTCCAGCAAATCTGCAATTAAACCTGAACAAATGACTGATGAGGTCTGGGATTTTGTTTTCTGTGATGGCCCGTATCCTAAATCATCTGAGATCTCATCATCAATTCTCAGTAAGATGAAGCAGGAGTTTGAATATTGGTATCCTTTTGATCTTCGGGTGTCTGGCAAGGATCTAATACAAAATCATTTAACCTTCTGCATCTACAACCATACAGCTATAATGTCCAAGAAGCACTGGCCTCGTGGTTTCAGATGCAATGGGCACATAATGCTCAATGCTCAGAAAATGTCCAAGTCTACAGGGAACTTTAGGACAATTCGCCAGGCAATTGAGGAATTTTCTGCTGATGCCACTCGCTTTTCTTTGGCTGATGCTGGAGATGGTGTTGATGATGCAAATTTTGCATTTGACACTGCCAATGCTGCAATCCTGCGGCTTACTAAAGAGATCTCATGGACGGAAGAAGTTTTGGGTGCAGACTCTTCTTTGAGACCAGGCCCCCCAACTACTTATGCTGATAGGGTCTTTGCGAATGAGATAAATATTGCTGTGAACAGGACTGAGCAGAATTACAGTGGTTATATGTTCCGAGAAGCCCTCAAGACTGGATTTTATGATCTTCAAGCTGCTAGGGATGAGTATCGGTTTTCGTGTGGTGATGGGGGAATGAACCGTGATTTGTTGTGGCGTTTTATGGATGTGCAGACACGTCTTATTACTCCAATCTGCCCACACTATGGAGAATATGTATGGAGGGAACTCTTGAAGAAGGACGGGTTTGTGGTAAACGCAGGATGGCCTTTGGCTGACGCTCCGGACCTAACCCTCCAGAGTGCCAATAAGTATTTGCAGGACTCGATCATTTTAATGAGGAAGCTCCTCCAAAAGCAAGTTTTAGGCTCAAAGAAGGGTAATAAGAAGGGTACTCCAGTTACAGCGTTGACAGAAGACCACAATCTAACTGGCTTAATCTATGTGAATGAGCACTTTGATGGGTGGAAGGCAGAGTGCCTGAAAATCCTCCAAATTAACTTTAACAGGGACGGTCGTACTTTTTCTTCAGACAAGGTGATACAAGAAGCATTGCAAAAAAGTTCTATTGGTCAGTCGAAAGATTTTAGACAAATCCAAAAGCTTTGTATGCCTTTCATGAAATTCAAGAAGGATGAAGCAATTGCAATTGGGGCTCAGGCCTTGGATTTGAAGCTACCTTTTGGCGAGATTGAGGTCCTTCAAGAGAACTTGGACTTAATTAAGAGACAGCTTGGTCTTCAAGAGGTAGAAATATTGTCTGCTACAAATCCTGATGCACTTTCTAAAGCTGGTTCTCTTGTCAAACTGTTAGAGCAGAATCCTCCAGCACCCGGAAGCCCTACTGCCATCTTCTTGACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0006029 GO:0006464 GO:0006486 GO:0006493 GO:0006807 GO:0008150 GO:0008152 GO:0008378 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0010384 GO:0010404 GO:0010405 GO:0012505 GO:0016740 GO:0016757 GO:0016758 GO:0018193 GO:0018208 GO:0018258 GO:0019538 GO:0031410 GO:0031982 GO:0031984 GO:0034645 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044036 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0070085 GO:0071554 GO:0071704 GO:0097708 GO:0098791 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1990714

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4094 Galactosyl_T

Protein Analysis

1109

Amino Acids

125.45

Weight (kDa)

6.39

Isoelectric Point (pI)

45.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA-synt_1	PF00133	47 - 128	5.8e-08	tRNA synthetases class I (I, L, M and V)
tRNA-synt_1	PF00133	216 - 778	2.3e-16	tRNA synthetases class I (I, L, M and V)
tRNA-synt_1g	PF09334	685 - 784	2e-08	tRNA synthetases class I (M)
tRNA-synt_1e	PF01406	692 - 768	9.4e-09	tRNA synthetases class I (C) catalytic domain
Anticodon_1	PF08264	818 - 947	1.5e-13	Anticodon-binding domain of tRNA ligase
RBD_LARS1	PF24810	972 - 1048	1.1e-06	Leucine--tRNA ligase, RagD-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002108)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G53340 AT5G53340
fragaria_vesca	FvH4_5g03830 FvH4_5g03830 FvH4_5g03830 FvH4_5g03830 FvH4_5g03830 FvH4_5g03830 FvH4_5g03830 FvH4_7g30880 FvH4_7g30880 FvH4_7g30880 FvH4_7g30880 FvH4_7g30880
malus_domestica	MD01G1213800.v1.1 MD06G1099700.v1.1 MD07G1283500.v1.1 MD14G1119400.v1.1
prunus_persica	Prupe.2G305900_v2.0.a1 Prupe.5G113400_v2.0.a1 Prupe.5G113400_v2.0.a1
pyrus_communis	pycom01g22450 pycom06g09500 pycom07g25760
rosa_chinensis	RchiOBHm_Chr1g0379951 RchiOBHm_Chr7g0195671
rosa_laevigata	RLG00000026346
rosa_multiflora	Rmu_sc0003314.1_g000015 Rmu_sc0004184.1_g000018 Rmu_sc0016754.1_g000001 Rmu_sc0035510.1_g000001
rosa_roxburghii	Rroxscaffold_3G00260230 Rroxscaffold_4G00279830
rosa_rugosa	Rorug01G0415900 Rorug07G0025600
rosa_samantha	Rh1AG440400 Rh1BG396200 Rh1DG427000 Rh7AG153400 Rh7BG154600 Rh7CG158600 Rh7CG158700
rosa_wichuraiana	Rw1G038290 Rw7G013100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	618
AarI	CACCTGC	1 cut(s)	473
AasI	GACNNNNNNGTC	1 cut(s)	3201
Acc36I	ACCTGC	3 cut(s)	473, 736, 1321
AccB1I	GGYRCC	2 cut(s)	901, 1025
AccB7I	CCANNNNNTGG	2 cut(s)	1394, 2672
AccI	GTMKAC	1 cut(s)	2231
AccIII	TCCGGA	1 cut(s)	2749
AciI	CCGC	8 cut(s)	74, 84, 293, 540, 1409, 1586, 1712, 2368
AclWI	GGATC	3 cut(s)	605, 618, 2112
AcsI	RAATTY	5 cut(s)	602, 1847, 2270, 2332, 3089
AcuI	CTGAAG	1 cut(s)	2979
AfiI	CCNNNNNNNGG	8 cut(s)	197, 198, 738, 815, 1394, 1566, 2672, 3299
AflIII	ACRYGT	2 cut(s)	1926, 2642
AhlI	ACTAGT	1 cut(s)	59
AjiI	CACGTC	1 cut(s)	2645
AjnI	CCWGG	7 cut(s)	98, 196, 1387, 1545, 1835, 2256, 2428
AleI	CACNNNNGTG	1 cut(s)	734
Alw21I	GWGCWC	3 cut(s)	327, 490, 2922
Alw26I	GTCTC	8 cut(s)	99, 682, 961, 968, 1745, 1917, 2419, 3187
Alw44I	GTGCAC	1 cut(s)	486
AlwI	GGATC	3 cut(s)	605, 618, 2112
Aor13HI	TCCGGA	1 cut(s)	2749
ApaLI	GTGCAC	1 cut(s)	486
ApeKI	GCWGC	8 cut(s)	290, 524, 953, 956, 1073, 1406, 2357, 2561
ApoI	RAATTY	5 cut(s)	602, 1847, 2270, 2332, 3089
Asp700I	GAANNNNTTC	3 cut(s)	858, 944, 1496
AspA2I	CCTAGG	1 cut(s)	673
AspLEI	GCGC	2 cut(s)	317, 1660
AspS9I	GGNCC	8 cut(s)	194, 655, 843, 1108, 2003, 2432, 2752, 3163
AsuC2I	CCSGG	2 cut(s)	192, 3300
AsuHPI	GGTGA	4 cut(s)	863, 1652, 2603, 3016
AsuNHI	GCTAGC	1 cut(s)	1462
AvaII	GGWCC	6 cut(s)	194, 655, 843, 1108, 2752, 3163
AvrII	CCTAGG	1 cut(s)	673
BaeGI	GKGCMC	2 cut(s)	490, 2199
BaeI	ACNNNNGTAYC	4 cut(s)	1242, 1275, 2850, 2883
BamHI	GGATCC	1 cut(s)	610
BanI	GGYRCC	2 cut(s)	901, 1025
BanII	GRGCYC	1 cut(s)	3124
BarI	GAAGNNNNNNTAC	2 cut(s)	2977, 3009
BauI	CACGAG	1 cut(s)	2175
BbsI	GAAGAC	2 cut(s)	2889, 3197
Bbv12I	GWGCWC	3 cut(s)	327, 490, 2922
BbvCI	CCTCAGC	1 cut(s)	370
BbvI	GCAGC	8 cut(s)	277, 511, 940, 968, 1085, 1393, 2344, 2548
BceAI	ACGGC	1 cut(s)	1772
BcgI	CGANNNNNNTGC	2 cut(s)	2156, 2190
BciT130I	CCWGG	7 cut(s)	100, 198, 1389, 1547, 1837, 2258, 2430
BciVI	GTATCC	2 cut(s)	2019, 2085
BcnI	CCSGG	2 cut(s)	192, 3300
BcoDI	GTCTC	8 cut(s)	99, 682, 961, 968, 1745, 1917, 2419, 3187
BcuI	ACTAGT	1 cut(s)	59
BfaI	CTAG	8 cut(s)	60, 116, 387, 674, 1104, 1181, 1463, 2565
BfmI	CTRYAG	3 cut(s)	705, 954, 2232
BfuAI	ACCTGC	3 cut(s)	473, 736, 1321
BfuI	GTATCC	2 cut(s)	2019, 2085
BglII	AGATCT	4 cut(s)	784, 1426, 2025, 2382
BlnI	CCTAGG	1 cut(s)	673
BmcAI	AGTACT	2 cut(s)	1100, 1626
Bme1390I	CCNGG	9 cut(s)	100, 192, 198, 1389, 1547, 1837, 2258, 2430, 3300
Bme18I	GGWCC	6 cut(s)	194, 655, 843, 1108, 2752, 3163
BmgBI	CACGTC	1 cut(s)	2645
BmgT120I	GGNCC	8 cut(s)	194, 655, 843, 1108, 2003, 2432, 2752, 3163
BmiI	GGNNCC	7 cut(s)	612, 903, 1027, 1109, 1110, 1936, 2434
BmrFI	CCNGG	9 cut(s)	100, 192, 198, 1389, 1547, 1837, 2258, 2430, 3300
BmrI	ACTGGG	1 cut(s)	1251
BmsI	GCATC	9 cut(s)	259, 536, 1839, 2142, 2177, 2272, 2296, 2317, 3232
BmtI	GCTAGC	1 cut(s)	1466
BmuI	ACTGGG	1 cut(s)	1251
BpiI	GAAGAC	2 cut(s)	2889, 3197
BplI	GAGNNNNNCTC	2 cut(s)	2517, 2549
BpmI	CTGGAG	8 cut(s)	302, 477, 706, 1257, 2331, 2747, 2847, 3276
Bpu10I	CCTNAGC	2 cut(s)	370, 3123
BpuEI	CTTGAG	4 cut(s)	644, 852, 1415, 2519
BpuMI	CCSGG	2 cut(s)	192, 3300
BsaAI	YACGTR	1 cut(s)	1079
BsaBI	GATNNNNATC	1 cut(s)	2574
BsaI	GGTCTC	4 cut(s)	99, 961, 968, 2419
BsaJI	CCNNGG	7 cut(s)	197, 468, 673, 765, 1835, 1836, 3129
BsaWI	WCCGGW	1 cut(s)	2749
BsaXI	ACNNNNNCTCC	6 cut(s)	1255, 1285, 2304, 2334, 2667, 2697
Bsc4I	CCNNNNNNNGG	8 cut(s)	197, 198, 738, 815, 1394, 1566, 2672, 3299
Bse118I	RCCGGY	1 cut(s)	108
Bse3DI	GCAATG	3 cut(s)	1899, 2197, 3017
Bse8I	GATNNNNATC	1 cut(s)	2574
BseAI	TCCGGA	1 cut(s)	2749
BseBI	CCWGG	7 cut(s)	100, 198, 1389, 1547, 1837, 2258, 2430
BseDI	CCNNGG	7 cut(s)	197, 468, 673, 765, 1835, 1836, 3129
BseGI	GGATG	8 cut(s)	478, 820, 1830, 1846, 2575, 2638, 2735, 3106
BseJI	GATNNNNATC	1 cut(s)	2574
BseLI	CCNNNNNNNGG	8 cut(s)	197, 198, 738, 815, 1394, 1566, 2672, 3299
BseMI	GCAATG	3 cut(s)	1899, 2197, 3017
BseRI	GAGGAG	2 cut(s)	164, 2804
BseSI	GKGCMC	2 cut(s)	490, 2199
BseXI	GCAGC	8 cut(s)	277, 511, 940, 968, 1085, 1393, 2344, 2548
BsgI	GTGCAG	4 cut(s)	849, 1443, 2430, 2657
Bsh1285I	CGRYCG	1 cut(s)	2983
BshNI	GGYRCC	2 cut(s)	901, 1025
BsiEI	CGRYCG	1 cut(s)	2983
BsiHKAI	GWGCWC	3 cut(s)	327, 490, 2922
BsiSI	CCGG	5 cut(s)	109, 192, 1728, 2750, 3300
BslFI	GGGAC	3 cut(s)	1094, 1837, 2990
BslI	CCNNNNNNNGG	8 cut(s)	197, 198, 738, 815, 1394, 1566, 2672, 3299
BsmAI	GTCTC	8 cut(s)	99, 682, 961, 968, 1745, 1917, 2419, 3187
BsmBI	CGTCTC	1 cut(s)	682
BsmFI	GGGAC	3 cut(s)	1094, 1837, 2990
Bso31I	GGTCTC	4 cut(s)	99, 961, 968, 2419
Bsp1286I	GDGCHC	5 cut(s)	327, 490, 2199, 2922, 3124
Bsp13I	TCCGGA	1 cut(s)	2749
Bsp19I	CCATGG	1 cut(s)	765
BspACI	CCGC	8 cut(s)	74, 84, 293, 540, 1409, 1586, 1712, 2368
BspEI	TCCGGA	1 cut(s)	2749
BspHI	TCATGA	2 cut(s)	835, 3084
BspLI	GGNNCC	7 cut(s)	612, 903, 1027, 1109, 1110, 1936, 2434
BspMAI	CTGCAG	1 cut(s)	958
BspMI	ACCTGC	3 cut(s)	473, 736, 1321
BspOI	GCTAGC	1 cut(s)	1466
BspPI	GGATC	3 cut(s)	605, 618, 2112
BspQI	GCTCTTC	2 cut(s)	83, 1212
BspT107I	GGYRCC	2 cut(s)	901, 1025
BspTNI	GGTCTC	4 cut(s)	99, 961, 968, 2419
BsrDI	GCAATG	3 cut(s)	1899, 2197, 3017
BsrFI	RCCGGY	1 cut(s)	108
BssAI	RCCGGY	1 cut(s)	108
BssECI	CCNNGG	7 cut(s)	197, 468, 673, 765, 1835, 1836, 3129
BssSI	CACGAG	1 cut(s)	2175
BssT1I	CCWWGG	3 cut(s)	673, 765, 3129
Bst2BI	CACGAG	1 cut(s)	2175
Bst2UI	CCWGG	7 cut(s)	100, 198, 1389, 1547, 1837, 2258, 2430
Bst6I	CTCTTC	4 cut(s)	83, 1212, 1710, 2422
BstAPI	GCANNNNNTGC	2 cut(s)	2203, 2336
BstBAI	YACGTR	1 cut(s)	1079
BstC8I	GCNNGC	3 cut(s)	356, 1464, 1574
BstDSI	CCRYGG	1 cut(s)	765
BstENI	CCTNNNNNAGG	2 cut(s)	736, 1564
BstF5I	GGATG	8 cut(s)	478, 820, 1830, 1846, 2575, 2638, 2735, 3106
BstHHI	GCGC	2 cut(s)	317, 1660
BstMAI	GTCTC	8 cut(s)	99, 682, 961, 968, 1745, 1917, 2419, 3187
BstMCI	CGRYCG	1 cut(s)	2983
BstNI	CCWGG	7 cut(s)	100, 198, 1389, 1547, 1837, 2258, 2430
BstNSI	RCATGY	3 cut(s)	263, 358, 1930
BstSCI	CCNGG	9 cut(s)	98, 190, 196, 1387, 1545, 1835, 2256, 2428, 3298
BstSFI	CTRYAG	3 cut(s)	705, 954, 2232
BstSLI	GKGCMC	2 cut(s)	490, 2199
BstV1I	GCAGC	8 cut(s)	277, 511, 940, 968, 1085, 1393, 2344, 2548
BstV2I	GAAGAC	2 cut(s)	2889, 3197
BstX2I	RGATCY	6 cut(s)	610, 784, 1426, 2025, 2104, 2382
BstYI	RGATCY	6 cut(s)	610, 784, 1426, 2025, 2104, 2382
BsuI	GTATCC	2 cut(s)	2019, 2085
BtgI	CCRYGG	1 cut(s)	765
BtrI	CACGTC	1 cut(s)	2645
BtsCI	GGATG	8 cut(s)	478, 820, 1830, 1846, 2575, 2638, 2735, 3106
BtsI	GCAGTG	2 cut(s)	654, 2346
BveI	ACCTGC	3 cut(s)	473, 736, 1321
Cac8I	GCNNGC	3 cut(s)	356, 1464, 1574
CciI	TCATGA	2 cut(s)	835, 3084
CfoI	GCGC	2 cut(s)	317, 1660
Cfr10I	RCCGGY	1 cut(s)	108
Cfr13I	GGNCC	8 cut(s)	194, 655, 843, 1108, 2003, 2432, 2752, 3163
CseI	GACGC	1 cut(s)	2753
DrdI	GACNNNNNNGTC	1 cut(s)	3201
DseDI	GACNNNNNNGTC	1 cut(s)	3201
Eam1104I	CTCTTC	4 cut(s)	83, 1212, 1710, 2422
EarI	CTCTTC	4 cut(s)	83, 1212, 1710, 2422
EciI	GGCGGA	2 cut(s)	89, 1727
Eco130I	CCWWGG	3 cut(s)	673, 765, 3129
Eco147I	AGGCCT	2 cut(s)	368, 3128
Eco24I	GRGCYC	1 cut(s)	3124
Eco31I	GGTCTC	4 cut(s)	99, 961, 968, 2419
Eco47I	GGWCC	6 cut(s)	194, 655, 843, 1108, 2752, 3163
Eco57I	CTGAAG	1 cut(s)	2979
EcoNI	CCTNNNNNAGG	2 cut(s)	736, 1564
EcoO109I	RGGNCCY	4 cut(s)	655, 1108, 2432, 3163
EcoRI	GAATTC	1 cut(s)	1847
EcoRII	CCWGG	7 cut(s)	98, 196, 1387, 1545, 1835, 2256, 2428
EcoT14I	CCWWGG	3 cut(s)	673, 765, 3129
EcoT22I	ATGCAT	1 cut(s)	1000
EcoT38I	GRGCYC	1 cut(s)	3124
ErhI	CCWWGG	3 cut(s)	673, 765, 3129
Esp3I	CGTCTC	1 cut(s)	682
FalI	AAGNNNNNCTT	2 cut(s)	933, 965
FaqI	GGGAC	3 cut(s)	1094, 1837, 2990
FauI	CCCGC	2 cut(s)	77, 1579
FblI	GTMKAC	1 cut(s)	2231
FokI	GGATG	8 cut(s)	485, 827, 1817, 1853, 2582, 2645, 2742, 3113
FriOI	GRGCYC	1 cut(s)	3124
FspBI	CTAG	8 cut(s)	60, 116, 387, 674, 1104, 1181, 1463, 2565
GlaI	GCGC	2 cut(s)	316, 1659
GsuI	CTGGAG	8 cut(s)	302, 477, 706, 1257, 2331, 2747, 2847, 3276
HapII	CCGG	5 cut(s)	109, 192, 1728, 2750, 3300
HgaI	GACGC	1 cut(s)	2753
HhaI	GCGC	2 cut(s)	317, 1660
Hin6I	GCGC	2 cut(s)	315, 1658
HinP1I	GCGC	2 cut(s)	315, 1658
HincII	GTYRAC	4 cut(s)	627, 1218, 1482, 2877
HindII	GTYRAC	4 cut(s)	627, 1218, 1482, 2877
HindIII	AAGCTT	4 cut(s)	380, 571, 1574, 3068
HpaII	CCGG	5 cut(s)	109, 192, 1728, 2750, 3300
HphI	GGTGA	4 cut(s)	863, 1652, 2603, 3016
HpyCH4IV	ACGT	3 cut(s)	691, 1078, 2644
HpySE526I	ACGT	3 cut(s)	691, 1078, 2644
HspAI	GCGC	2 cut(s)	315, 1658
KflI	GGGWCCC	1 cut(s)	1108
Kpn2I	TCCGGA	1 cut(s)	2749
LguI	GCTCTTC	2 cut(s)	83, 1212
LmnI	GCTCC	4 cut(s)	330, 1569, 2752, 2817
Lsp1109I	GCAGC	8 cut(s)	277, 511, 940, 968, 1085, 1393, 2344, 2548
LweI	GCATC	9 cut(s)	259, 536, 1839, 2142, 2177, 2272, 2296, 2317, 3232
MaeI	CTAG	8 cut(s)	60, 116, 387, 674, 1104, 1181, 1463, 2565
MaeII	ACGT	3 cut(s)	691, 1078, 2644
MaeIII	GTNAC	5 cut(s)	590, 680, 791, 1249, 2866
MfeI	CAATTG	3 cut(s)	2262, 3108, 3114
MflI	RGATCY	6 cut(s)	610, 784, 1426, 2025, 2104, 2382
MhlI	GDGCHC	5 cut(s)	327, 490, 2199, 2922, 3124
MlyI	GAGTC	5 cut(s)	182, 1819, 1868, 2408, 2783
MmeI	TCCRAC	2 cut(s)	609, 909
Mph1103I	ATGCAT	1 cut(s)	1000
MroI	TCCGGA	1 cut(s)	2749
MroXI	GAANNNNTTC	3 cut(s)	858, 944, 1496
MslI	CAYNNNNRTG	4 cut(s)	734, 887, 2801, 2925
MspA1I	CMGCKG	1 cut(s)	374
MspI	CCGG	5 cut(s)	109, 192, 1728, 2750, 3300
MspR9I	CCNGG	9 cut(s)	100, 192, 198, 1389, 1547, 1837, 2258, 2430, 3300
MunI	CAATTG	3 cut(s)	2262, 3108, 3114
MvaI	CCWGG	7 cut(s)	100, 198, 1389, 1547, 1837, 2258, 2430
NciI	CCSGG	2 cut(s)	192, 3300
NcoI	CCATGG	1 cut(s)	765
NheI	GCTAGC	1 cut(s)	1462
NlaIV	GGNNCC	7 cut(s)	612, 903, 1027, 1109, 1110, 1936, 2434
NmeAIII	GCCGAG	1 cut(s)	493
NmuCI	GTSAC	3 cut(s)	590, 680, 1249
NsiI	ATGCAT	1 cut(s)	1000
NspI	RCATGY	3 cut(s)	263, 358, 1930
OliI	CACNNNNGTG	1 cut(s)	734
PacI	TTAATTAA	1 cut(s)	3189
PaeI	GCATGC	1 cut(s)	358
PagI	TCATGA	2 cut(s)	835, 3084
PaqCI	CACCTGC	1 cut(s)	473
PasI	CCCWGGG	1 cut(s)	1836
PceI	AGGCCT	2 cut(s)	368, 3128
PciI	ACATGT	1 cut(s)	1926
PciSI	GCTCTTC	2 cut(s)	83, 1212
PdmI	GAANNNNTTC	3 cut(s)	858, 944, 1496
PfeI	GAWTC	7 cut(s)	394, 715, 1268, 1497, 1789, 1871, 3286
PflMI	CCANNNNNTGG	2 cut(s)	1394, 2672
PfoI	TCCNGGA	3 cut(s)	190, 1387, 1545
PleI	GAGTC	5 cut(s)	181, 1819, 1867, 2408, 2783
PpsI	GAGTC	5 cut(s)	181, 1819, 1867, 2408, 2783
Ppu21I	YACGTR	1 cut(s)	1079
PpuMI	RGGWCCY	3 cut(s)	655, 1108, 3163
PscI	ACATGT	1 cut(s)	1926
PsiI	TTATAA	1 cut(s)	618
Psp5II	RGGWCCY	3 cut(s)	655, 1108, 3163
Psp6I	CCWGG	7 cut(s)	98, 196, 1387, 1545, 1835, 2256, 2428
PspGI	CCWGG	7 cut(s)	98, 196, 1387, 1545, 1835, 2256, 2428
PspN4I	GGNNCC	7 cut(s)	612, 903, 1027, 1109, 1110, 1936, 2434
PspPI	GGNCC	8 cut(s)	194, 655, 843, 1108, 2003, 2432, 2752, 3163
PspPPI	RGGWCCY	3 cut(s)	655, 1108, 3163
PstI	CTGCAG	1 cut(s)	958
PsuI	RGATCY	6 cut(s)	610, 784, 1426, 2025, 2104, 2382
PvuII	CAGCTG	1 cut(s)	374
RseI	CAYNNNNRTG	4 cut(s)	734, 887, 2801, 2925
SapI	GCTCTTC	2 cut(s)	83, 1212
Sau96I	GGNCC	8 cut(s)	194, 655, 843, 1108, 2003, 2432, 2752, 3163
ScaI	AGTACT	2 cut(s)	1100, 1626
SchI	GAGTC	5 cut(s)	182, 1819, 1868, 2408, 2783
ScrFI	CCNGG	9 cut(s)	100, 192, 198, 1389, 1547, 1837, 2258, 2430, 3300
SduI	GDGCHC	5 cut(s)	327, 490, 2199, 2922, 3124
SfaNI	GCATC	9 cut(s)	259, 536, 1839, 2142, 2177, 2272, 2296, 2317, 3232
SfcI	CTRYAG	3 cut(s)	705, 954, 2232
SinI	GGWCC	6 cut(s)	194, 655, 843, 1108, 2752, 3163
SmiMI	CAYNNNNRTG	4 cut(s)	734, 887, 2801, 2925
SmlI	CTYRAG	4 cut(s)	659, 867, 1430, 2534
SmoI	CTYRAG	4 cut(s)	659, 867, 1430, 2534
SpeI	ACTAGT	1 cut(s)	59
SphI	GCATGC	1 cut(s)	358
SseBI	AGGCCT	2 cut(s)	368, 3128
SsiI	CCGC	8 cut(s)	74, 84, 293, 540, 1409, 1586, 1712, 2368
SspI	AATATT	3 cut(s)	2069, 2479, 3222
SspMI	CTAG	8 cut(s)	60, 116, 387, 674, 1104, 1181, 1463, 2565
StuI	AGGCCT	2 cut(s)	368, 3128
StyD4I	CCNGG	9 cut(s)	98, 190, 196, 1387, 1545, 1835, 2256, 2428, 3298
StyI	CCWWGG	3 cut(s)	673, 765, 3129
TaiI	ACGT	3 cut(s)	694, 1081, 2647
TaqI	TCGA	7 cut(s)	123, 136, 275, 518, 726, 2792, 3044
TatI	WGTACW	3 cut(s)	347, 1098, 1624
TauI	GCSGC	3 cut(s)	296, 543, 2371
TfiI	GAWTC	7 cut(s)	394, 715, 1268, 1497, 1789, 1871, 3286
TseFI	GTSAC	3 cut(s)	590, 680, 1249
TseI	GCWGC	8 cut(s)	290, 524, 953, 956, 1073, 1406, 2357, 2561
Tsp45I	GTSAC	3 cut(s)	590, 680, 1249
TspGWI	ACGGA	2 cut(s)	779, 2408
Van91I	CCANNNNNTGG	2 cut(s)	1394, 2672
VneI	GTGCAC	1 cut(s)	486
VpaK11BI	GGWCC	6 cut(s)	194, 655, 843, 1108, 2752, 3163
XagI	CCTNNNNNAGG	2 cut(s)	736, 1564
XapI	RAATTY	5 cut(s)	602, 1847, 2270, 2332, 3089
XbaI	TCTAGA	1 cut(s)	115
XceI	RCATGY	3 cut(s)	263, 358, 1930
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2894
XmaJI	CCTAGG	1 cut(s)	673
XmiI	GTMKAC	1 cut(s)	2231
XmnI	GAANNNNTTC	3 cut(s)	858, 944, 1496
XspI	CTAG	8 cut(s)	60, 116, 387, 674, 1104, 1181, 1463, 2565
ZrmI	AGTACT	2 cut(s)	1100, 1626
Zsp2I	ATGCAT	1 cut(s)	1000

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.