Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0002108

Physical Location & Seq

Genomic Coordinates Forward (+)

2289471 .. 2293789

Gene Structure 4319 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g03830.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

ATGCATAGCCGGCCGTCGCAGACCCGGCTATTGCCTCTCCAGTCCAGAATTTCACTTCTCCTGCTCGCCATGCTCTCTACCATGGCCGCAATTTACGTCGCCGGCCGTATGTGGCAGGATGCTGAAGCTAGGGTTCATTTGATTCAGGAACTTGATAAAACAAATAGTCAGGTTCACACTGCTATATCGGTAGACGATACGCTTAAGATTATAGCTTGCAGGGAGCAACAGAAGAAGTTGTCCGCCGTGGAGACAGAACTGGCTGCAGCAAGGAAAGAAGGCTTTGTTCCGAAGAGCTTGGTGGAGAATGAGAAGGCTAATTATTCTAGGAAGAGGATTCTAGCAGTTATAGGGATTTTTACGACGTTTGGCCGCAAGAAAAATAGGGAGGCAATTCGTATGGCGTGGATGCCTACTGGTGCAGCAATGAAAAAAGTGGCAGATGAAAAGGGCATTGTTGTGCGGTTTGTAATTGGAAGAAGCCCAAATCGTGGAGACAGTTTGGACAAGCAAATCGACAGTGAAAGTAGGCAGACCAAAGACTTCATTGTTCTTGATGGTCAACTAGAGGCATCTGAGGAGGCTTCGAAAAAGATGAAATCATTCGTTACTCATGCTGTAGAGAGCTGGGATGCTGAGTTTTATGTGAAGGTTAATGATGATGTTTTTGTTAATATTGATGTCCTTGGAGCAACACTAACTACATATTTGAATAAGCCTCGTGTCTACATTGGGTGCATGAAATCAGGCGAAGTTTTCTCTGAACCGACTCACAAGTGGTATGAACCAGACTGGTGGAAATTTGGTGATGCAAAATCATACCCTACACATGCATCTGGTGAAATTTATGCCATTTCCAGAGCATTAGCTCAATTTTTATCAATAAATAGATCTATTCTTCGTACTTATGCTCATGATGATGTTAGTGCTGGATCATGGTTTATTGGGCTTGACGTGGAGCACATTAATGAGCGAAAGTTTTGCTGCTCCGCCTTGGTTCCAGGAGCAATCTGTACAGCTGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0006029 GO:0006464 GO:0006486 GO:0006493 GO:0006807 GO:0008150 GO:0008152 GO:0008378 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0010384 GO:0010404 GO:0010405 GO:0012505 GO:0016740 GO:0016757 GO:0016758 GO:0018193 GO:0018208 GO:0018258 GO:0019538 GO:0031410 GO:0031982 GO:0031984 GO:0034645 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044036 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0070085 GO:0071554 GO:0071704 GO:0097708 GO:0098791 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1990714

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4094 Galactosyl_T

Protein Analysis

342

Amino Acids

38.3

Weight (kDa)

8.81

Isoelectric Point (pI)

42.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF4094	PF13334	15 - 92	8.9e-08	Domain of unknown function (DUF4094)
Galactosyl_T	PF01762	128 - 264	9.1e-24	Galactosyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002108)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G53340 AT5G53340
fragaria_vesca	FvH4_5g03830 FvH4_5g03830 FvH4_5g03830 FvH4_5g03830 FvH4_5g03830 FvH4_5g03830 FvH4_5g03830 FvH4_7g30880 FvH4_7g30880 FvH4_7g30880 FvH4_7g30880 FvH4_7g30880
malus_domestica	MD01G1213800.v1.1 MD06G1099700.v1.1 MD07G1283500.v1.1 MD14G1119400.v1.1
prunus_persica	Prupe.2G305900_v2.0.a1 Prupe.5G113400_v2.0.a1 Prupe.5G113400_v2.0.a1
pyrus_communis	pycom01g22450 pycom06g09500 pycom07g25760
rosa_chinensis	RchiOBHm_Chr1g0379951 RchiOBHm_Chr7g0195671
rosa_laevigata	RLG00000026346
rosa_multiflora	Rmu_sc0003314.1_g000015 Rmu_sc0004184.1_g000018 Rmu_sc0016754.1_g000001 Rmu_sc0035510.1_g000001
rosa_roxburghii	Rroxscaffold_3G00260230 Rroxscaffold_4G00279830
rosa_rugosa	Rorug01G0415900 Rorug07G0025600
rosa_samantha	Rh1AG440400 Rh1BG396200 Rh1DG427000 Rh7AG153400 Rh7BG154600 Rh7CG158600 Rh7CG158700
rosa_wichuraiana	Rw1G038290 Rw7G013100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	491
AccI	GTMKAC	2 cut(s)	192, 726
AciI	CCGC	5 cut(s)	87, 243, 373, 463, 990
AclWI	GGATC	1 cut(s)	940
AcoI	YGGCCR	4 cut(s)	11, 84, 103, 370
AcsI	RAATTY	3 cut(s)	48, 800, 843
AcuI	CTGAAG	1 cut(s)	144
AfaI	GTAC	2 cut(s)	904, 1015
AfiI	CCNNNNNNNGG	1 cut(s)	491
AflII	CTTAAG	1 cut(s)	203
AgsI	TTSAA	1 cut(s)	712
AjiI	CACGTC	1 cut(s)	955
AjnI	CCWGG	1 cut(s)	1000
AluBI	AGCT	6 cut(s)	128, 215, 297, 627, 869, 1019
AluI	AGCT	6 cut(s)	128, 215, 297, 627, 869, 1019
Alw21I	GWGCWC	1 cut(s)	963
Alw26I	GTCTC	2 cut(s)	245, 489
AlwI	GGATC	1 cut(s)	940
AoxI	GGCC	4 cut(s)	11, 84, 103, 370
ApeKI	GCWGC	4 cut(s)	263, 266, 422, 984
ApoI	RAATTY	3 cut(s)	48, 800, 843
AseI	ATTAAT	1 cut(s)	966
Asp700I	GAANNNNTTC	1 cut(s)	602
AsuC2I	CCSGG	1 cut(s)	25
AsuHPI	GGTGA	2 cut(s)	818, 851
AsuII	TTCGAA	1 cut(s)	587
BauI	CACGAG	1 cut(s)	720
Bbv12I	GWGCWC	1 cut(s)	963
BbvI	GCAGC	4 cut(s)	250, 278, 434, 971
BccI	CCATC	1 cut(s)	551
BceAI	ACGGC	2 cut(s)	90, 230
BcgI	CGANNNNNNTGC	2 cut(s)	963, 997
BciT130I	CCWGG	1 cut(s)	1002
BcnI	CCSGG	1 cut(s)	25
BcoDI	GTCTC	2 cut(s)	245, 489
BfaI	CTAG	4 cut(s)	129, 327, 341, 566
BfmI	CTRYAG	2 cut(s)	264, 618
BfrI	CTTAAG	1 cut(s)	203
BglII	AGATCT	1 cut(s)	890
BisI	GCNGC	6 cut(s)	87, 264, 267, 373, 423, 985
BlsI	GCNGC	6 cut(s)	88, 265, 268, 374, 424, 986
Bme1390I	CCNGG	2 cut(s)	25, 1002
BmgBI	CACGTC	1 cut(s)	955
BmiI	GGNNCC	1 cut(s)	999
BmrFI	CCNGG	2 cut(s)	25, 1002
BmsI	GCATC	6 cut(s)	109, 399, 581, 622, 799, 842
BpmI	CTGGAG	1 cut(s)	23
Bpu14I	TTCGAA	1 cut(s)	587
BpuMI	CCSGG	1 cut(s)	25
BsaJI	CCNNGG	4 cut(s)	81, 246, 685, 993
Bsc4I	CCNNNNNNNGG	1 cut(s)	491
Bse118I	RCCGGY	2 cut(s)	9, 101
Bse1I	ACTGG	4 cut(s)	40, 264, 421, 797
Bse3DI	GCAATG	1 cut(s)	432
BseBI	CCWGG	1 cut(s)	1002
BseDI	CCNNGG	4 cut(s)	81, 246, 685, 993
BseGI	GGATG	3 cut(s)	124, 414, 637
BseLI	CCNNNNNNNGG	1 cut(s)	491
BseMI	GCAATG	1 cut(s)	432
BseMII	CTCAG	2 cut(s)	567, 627
BseNI	ACTGG	4 cut(s)	40, 264, 421, 797
BseRI	GAGGAG	1 cut(s)	593
BseX3I	CGGCCG	2 cut(s)	11, 103
BseXI	GCAGC	4 cut(s)	250, 278, 434, 971
BseYI	CCCAGC	1 cut(s)	627
BsgI	GTGCAG	1 cut(s)	441
Bsh1285I	CGRYCG	2 cut(s)	14, 106
BshFI	GGCC	4 cut(s)	13, 86, 105, 372
BsiEI	CGRYCG	2 cut(s)	14, 106
BsiHKAI	GWGCWC	1 cut(s)	963
BsiSI	CCGG	3 cut(s)	10, 25, 102
BslI	CCNNNNNNNGG	1 cut(s)	491
BsmAI	GTCTC	2 cut(s)	245, 489
BsnI	GGCC	4 cut(s)	13, 86, 105, 372
Bsp119I	TTCGAA	1 cut(s)	587
Bsp1286I	GDGCHC	1 cut(s)	963
Bsp1407I	TGTACA	1 cut(s)	1013
Bsp143I	GATC	2 cut(s)	890, 932
Bsp19I	CCATGG	1 cut(s)	81
BspACI	CCGC	5 cut(s)	87, 243, 373, 463, 990
BspANI	GGCC	4 cut(s)	13, 86, 105, 372
BspCNI	CTCAG	2 cut(s)	568, 628
BspHI	TCATGA	1 cut(s)	913
BspLI	GGNNCC	1 cut(s)	999
BspMAI	CTGCAG	1 cut(s)	268
BspPI	GGATC	1 cut(s)	940
BspQI	GCTCTTC	1 cut(s)	287
BspT104I	TTCGAA	1 cut(s)	587
BspTI	CTTAAG	1 cut(s)	203
BsrDI	GCAATG	1 cut(s)	432
BsrFI	RCCGGY	2 cut(s)	9, 101
BsrGI	TGTACA	1 cut(s)	1013
BsrI	ACTGG	4 cut(s)	40, 264, 421, 797
BssAI	RCCGGY	2 cut(s)	9, 101
BssECI	CCNNGG	4 cut(s)	81, 246, 685, 993
BssMI	GATC	2 cut(s)	890, 932
BssSI	CACGAG	1 cut(s)	720
BssT1I	CCWWGG	3 cut(s)	81, 685, 993
Bst2BI	CACGAG	1 cut(s)	720
Bst2UI	CCWGG	1 cut(s)	1002
Bst4CI	ACNGT	2 cut(s)	500, 521
Bst6I	CTCTTC	2 cut(s)	287, 326
BstAFI	CTTAAG	1 cut(s)	203
BstAUI	TGTACA	1 cut(s)	1013
BstBI	TTCGAA	1 cut(s)	587
BstC8I	GCNNGC	4 cut(s)	11, 66, 103, 217
BstDEI	CTNAG	2 cut(s)	576, 636
BstDSI	CCRYGG	2 cut(s)	81, 246
BstF5I	GGATG	3 cut(s)	124, 414, 637
BstKTI	GATC	2 cut(s)	893, 935
BstMAI	GTCTC	2 cut(s)	245, 489
BstMBI	GATC	2 cut(s)	890, 932
BstMCI	CGRYCG	2 cut(s)	14, 106
BstMWI	GCNNNNNNNGC	3 cut(s)	10, 25, 70
BstNI	CCWGG	1 cut(s)	1002
BstNSI	RCATGY	1 cut(s)	833
BstSCI	CCNGG	2 cut(s)	23, 1000
BstSFI	CTRYAG	2 cut(s)	264, 618
BstV1I	GCAGC	4 cut(s)	250, 278, 434, 971
BstX2I	RGATCY	1 cut(s)	890
BstXI	CCANNNNNNTGG	1 cut(s)	795
BstYI	RGATCY	1 cut(s)	890
BstZI	CGGCCG	2 cut(s)	11, 103
BsuRI	GGCC	4 cut(s)	13, 86, 105, 372
BtgI	CCRYGG	2 cut(s)	81, 246
BtrI	CACGTC	1 cut(s)	955
BtsCI	GGATG	3 cut(s)	124, 414, 637
BtsI	GCAGTG	1 cut(s)	177
BtsIMutI	CAGTG	2 cut(s)	177, 526
Cac8I	GCNNGC	4 cut(s)	11, 66, 103, 217
CciI	TCATGA	1 cut(s)	913
Cfr10I	RCCGGY	2 cut(s)	9, 101
Csp6I	GTAC	2 cut(s)	903, 1014
CviAII	CATG	7 cut(s)	70, 82, 614, 739, 830, 914, 936
CviQI	GTAC	2 cut(s)	903, 1014
DdeI	CTNAG	2 cut(s)	576, 636
DpnI	GATC	2 cut(s)	892, 934
DpnII	GATC	2 cut(s)	890, 932
EaeI	YGGCCR	4 cut(s)	11, 84, 103, 370
EagI	CGGCCG	2 cut(s)	11, 103
Eam1104I	CTCTTC	2 cut(s)	287, 326
EarI	CTCTTC	2 cut(s)	287, 326
EciI	GGCGGA	2 cut(s)	232, 979
EclXI	CGGCCG	2 cut(s)	11, 103
Eco130I	CCWWGG	3 cut(s)	81, 685, 993
Eco52I	CGGCCG	2 cut(s)	11, 103
Eco57I	CTGAAG	1 cut(s)	144
EcoRII	CCWGG	1 cut(s)	1000
EcoT14I	CCWWGG	3 cut(s)	81, 685, 993
EcoT22I	ATGCAT	2 cut(s)	6, 835
ErhI	CCWWGG	3 cut(s)	81, 685, 993
FaeI	CATG	7 cut(s)	73, 85, 617, 742, 833, 917, 939
FatI	CATG	7 cut(s)	69, 81, 613, 738, 829, 913, 935
FblI	GTMKAC	2 cut(s)	192, 726
Fnu4HI	GCNGC	6 cut(s)	87, 264, 267, 373, 423, 985
FokI	GGATG	3 cut(s)	131, 421, 644
Fsp4HI	GCNGC	6 cut(s)	87, 264, 267, 373, 423, 985
FspBI	CTAG	4 cut(s)	129, 327, 341, 566
GluI	GCNGC	6 cut(s)	87, 264, 267, 373, 423, 985
GsaI	CCCAGC	1 cut(s)	631
GsuI	CTGGAG	1 cut(s)	23
HaeIII	GGCC	4 cut(s)	13, 86, 105, 372
HapII	CCGG	3 cut(s)	10, 25, 102
Hin1II	CATG	7 cut(s)	73, 85, 617, 742, 833, 917, 939
HincII	GTYRAC	1 cut(s)	563
HindII	GTYRAC	1 cut(s)	563
HinfI	GANTC	3 cut(s)	142, 337, 769
HpaII	CCGG	3 cut(s)	10, 25, 102
HphI	GGTGA	2 cut(s)	818, 851
Hpy166II	GTNNAC	4 cut(s)	175, 193, 563, 727
Hpy188I	TCNGA	3 cut(s)	291, 577, 763
Hpy188III	TCNNGA	5 cut(s)	45, 146, 554, 858, 914
Hpy8I	GTNNAC	4 cut(s)	175, 193, 563, 727
Hpy99I	CGWCG	3 cut(s)	19, 101, 367
HpyAV	CCTTC	3 cut(s)	272, 307, 643
HpyCH4III	ACNGT	2 cut(s)	500, 521
HpyCH4IV	ACGT	3 cut(s)	96, 365, 954
HpyCH4V	TGCA	7 cut(s)	4, 219, 266, 422, 738, 812, 833
HpyF10VI	GCNNNNNNNGC	3 cut(s)	10, 25, 70
HpyF3I	CTNAG	2 cut(s)	576, 636
HpySE526I	ACGT	3 cut(s)	96, 365, 954
Hsp92II	CATG	7 cut(s)	73, 85, 617, 742, 833, 917, 939
KroI	GCCGGC	2 cut(s)	9, 101
KroNI	GCCGGC	2 cut(s)	11, 103
Kzo9I	GATC	2 cut(s)	890, 932
LguI	GCTCTTC	1 cut(s)	287
LmnI	GCTCC	5 cut(s)	223, 689, 958, 992, 1004
Lsp1109I	GCAGC	4 cut(s)	250, 278, 434, 971
LweI	GCATC	6 cut(s)	109, 399, 581, 622, 799, 842
MaeI	CTAG	4 cut(s)	129, 327, 341, 566
MaeII	ACGT	3 cut(s)	96, 365, 954
MaeIII	GTNAC	1 cut(s)	607
MalI	GATC	2 cut(s)	892, 934
MboI	GATC	2 cut(s)	890, 932
MboII	GAAGA	5 cut(s)	244, 304, 343, 489, 890
MflI	RGATCY	1 cut(s)	890
MhlI	GDGCHC	1 cut(s)	963
MluCI	AATT	8 cut(s)	48, 90, 319, 393, 471, 800, 843, 872
MlyI	GAGTC	1 cut(s)	763
MnlI	CCTC	7 cut(s)	45, 327, 382, 562, 571, 574, 729
Mph1103I	ATGCAT	2 cut(s)	6, 835
MroNI	GCCGGC	2 cut(s)	9, 101
MroXI	GAANNNNTTC	1 cut(s)	602
MseI	TTAA	4 cut(s)	204, 654, 672, 966
MslI	CAYNNNNRTG	3 cut(s)	458, 918, 966
MspA1I	CMGCKG	1 cut(s)	1019
MspCI	CTTAAG	1 cut(s)	203
MspI	CCGG	3 cut(s)	10, 25, 102
MspR9I	CCNGG	2 cut(s)	25, 1002
MvaI	CCWGG	1 cut(s)	1002
MwoI	GCNNNNNNNGC	3 cut(s)	10, 25, 70
NaeI	GCCGGC	2 cut(s)	11, 103
NciI	CCSGG	1 cut(s)	25
NcoI	CCATGG	1 cut(s)	81
NdeII	GATC	2 cut(s)	890, 932
NgoMIV	GCCGGC	2 cut(s)	9, 101
NlaIII	CATG	7 cut(s)	73, 85, 617, 742, 833, 917, 939
NlaIV	GGNNCC	1 cut(s)	999
NsiI	ATGCAT	2 cut(s)	6, 835
NspI	RCATGY	1 cut(s)	833
NspV	TTCGAA	1 cut(s)	587
PagI	TCATGA	1 cut(s)	913
PciSI	GCTCTTC	1 cut(s)	287
PdiI	GCCGGC	2 cut(s)	11, 103
PdmI	GAANNNNTTC	1 cut(s)	602
PfeI	GAWTC	2 cut(s)	142, 337
PflMI	CCANNNNNTGG	1 cut(s)	491
PfoI	TCCNGGA	1 cut(s)	1000
PkrI	GCNGC	6 cut(s)	88, 265, 268, 374, 424, 986
PleI	GAGTC	1 cut(s)	763
PpsI	GAGTC	1 cut(s)	763
PshBI	ATTAAT	1 cut(s)	966
Psp6I	CCWGG	1 cut(s)	1000
PspFI	CCCAGC	1 cut(s)	627
PspGI	CCWGG	1 cut(s)	1000
PspN4I	GGNNCC	1 cut(s)	999
PstI	CTGCAG	1 cut(s)	268
PsuI	RGATCY	1 cut(s)	890
PvuII	CAGCTG	1 cut(s)	1019
RsaI	GTAC	2 cut(s)	904, 1015
RsaNI	GTAC	2 cut(s)	903, 1014
RseI	CAYNNNNRTG	3 cut(s)	458, 918, 966
SapI	GCTCTTC	1 cut(s)	287
SaqAI	TTAA	4 cut(s)	204, 654, 672, 966
SatI	GCNGC	6 cut(s)	87, 264, 267, 373, 423, 985
Sau3AI	GATC	2 cut(s)	890, 932
SchI	GAGTC	1 cut(s)	763
ScrFI	CCNGG	2 cut(s)	25, 1002
SduI	GDGCHC	1 cut(s)	963
SfaNI	GCATC	6 cut(s)	109, 399, 581, 622, 799, 842
SfcI	CTRYAG	2 cut(s)	264, 618
SfuI	TTCGAA	1 cut(s)	587
SmiMI	CAYNNNNRTG	3 cut(s)	458, 918, 966
SmlI	CTYRAG	1 cut(s)	203
SmoI	CTYRAG	1 cut(s)	203
Sse9I	AATT	8 cut(s)	48, 90, 319, 393, 471, 800, 843, 872
SsiI	CCGC	5 cut(s)	87, 243, 373, 463, 990
SspI	AATATT	1 cut(s)	676
SspMI	CTAG	4 cut(s)	129, 327, 341, 566
StyD4I	CCNGG	2 cut(s)	23, 1000
StyI	CCWWGG	3 cut(s)	81, 685, 993
TaaI	ACNGT	2 cut(s)	500, 521
TaiI	ACGT	3 cut(s)	99, 368, 957
TaqI	TCGA	2 cut(s)	516, 587
TasI	AATT	8 cut(s)	48, 90, 319, 393, 471, 800, 843, 872
TatI	WGTACW	1 cut(s)	1013
TauI	GCSGC	2 cut(s)	89, 375
TfiI	GAWTC	2 cut(s)	142, 337
Tru1I	TTAA	4 cut(s)	204, 654, 672, 966
Tru9I	TTAA	4 cut(s)	204, 654, 672, 966
TscAI	CASTG	2 cut(s)	184, 526
TseI	GCWGC	4 cut(s)	263, 266, 422, 984
TspDTI	ATGAA	7 cut(s)	125, 443, 459, 535, 611, 755, 798
TspRI	CASTG	2 cut(s)	184, 526
Van91I	CCANNNNNTGG	1 cut(s)	491
Vha464I	CTTAAG	1 cut(s)	203
VspI	ATTAAT	1 cut(s)	966
XapI	RAATTY	3 cut(s)	48, 800, 843
XceI	RCATGY	1 cut(s)	833
XmiI	GTMKAC	2 cut(s)	192, 726
XmnI	GAANNNNTTC	1 cut(s)	602
XspI	CTAG	4 cut(s)	129, 327, 341, 566
Zsp2I	ATGCAT	2 cut(s)	6, 835

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.