Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0002108

Physical Location & Seq

Genomic Coordinates Forward (+)

19359085 .. 19363545

Gene Structure 4461 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1119400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1029 bp

ATGCATAGCCGGCCGTCGCACAGCCGGCTATCTGGCTCCGCTTTTCACTCTCGGATTTCTGCTCTCTTGCTCACCATGGTCTCCACCATGGCCGCCATCTACGTCGCCGGCCGACTGTGGCAGGATGCTGCCGATAGGGTTTATTTGATTCAGGAGATTGATAGAAAAAATGGTCAGGGTCAATCTGCTGTATCCGTAGACGATACACTTAAAATTATAGCTTGCAGGGAGCAACAGAAGCAGCTGTCCGCCCTTGAGATGCAACTGACTGCGGCAAGACAGGAAGGTTTCGTCCCAAAGAGCTTGTCTAAAAATGAGGGGGCTCAATCTAAGAAGAAGCTTTTAGCTGTTATAGGAATTATTACAACATTTGACCGCAAGAAAAATAGAGAGGCAATTCGTAAGGCGTGGATGCCTACAGGTGAAGCTCTAAAAAGATTGGCAGATGAAAAGGGCATCATTGTGCGATTTGTGATTGGAAGAAGCCCAAATCGTGGAGACAGTTTGGACAAGCAAATAGACGAAGAAAATGAGCGGACCAACGACTTCATTATGCTTGACGATCAAGTGGAGGCATCTGAGGAGTGGCCAAAAAAGACAAAATCATTCTATATTCATGCTGTAGAGAACTGGGATGCCGAGTTTTATGTTAAGGTCAATGATGATGTTTATGTTAATATTGATGTCCTGGGAGCAACTCTAACTACTTATTTAGATAAGCCTCATGTCTATATTGGGTGCATGAAATCAGGCGAAGTCTTCTCTGAACCAACACGCAAGTGGTATGAGCCAGACTGGTGGAAATTTGGCGATGCAAAATCATACTTTAGACATGCTTCTGGTGAATTGTACGCCATTTCTAGAGCCTTGGCTCAATTTATATCAATAAACAGGTCTATTCTTCGTGCTTATGCTCATGATGATGTTAGTGCTGGGTCATGGTTTATTGGGCTTGATGTGAAGCACATTGATGAACGGAAATTTTGCTGCTCCTCTTGGATGCCAGGAGCAATATGTACAGCCGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0006029 GO:0006464 GO:0006486 GO:0006493 GO:0006807 GO:0008150 GO:0008152 GO:0008378 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0010384 GO:0010404 GO:0010405 GO:0012505 GO:0016740 GO:0016757 GO:0016758 GO:0018193 GO:0018208 GO:0018258 GO:0019538 GO:0031410 GO:0031982 GO:0031984 GO:0034645 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044036 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0070085 GO:0071554 GO:0071704 GO:0097708 GO:0098791 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1990714

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4094 Galactosyl_T

Protein Analysis

343

Amino Acids

38.78

Weight (kDa)

8.15

Isoelectric Point (pI)

39.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF4094	PF13334	17 - 94	1.4e-06	Domain of unknown function (DUF4094)
Galactosyl_T	PF01762	129 - 324	1.4e-34	Galactosyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002108)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G53340 AT5G53340
fragaria_vesca	FvH4_5g03830 FvH4_5g03830 FvH4_5g03830 FvH4_5g03830 FvH4_5g03830 FvH4_5g03830 FvH4_5g03830 FvH4_7g30880 FvH4_7g30880 FvH4_7g30880 FvH4_7g30880 FvH4_7g30880
malus_domestica	MD01G1213800.v1.1 MD06G1099700.v1.1 MD07G1283500.v1.1 MD14G1119400.v1.1
prunus_persica	Prupe.2G305900_v2.0.a1 Prupe.5G113400_v2.0.a1 Prupe.5G113400_v2.0.a1
pyrus_communis	pycom01g22450 pycom06g09500 pycom07g25760
rosa_chinensis	RchiOBHm_Chr1g0379951 RchiOBHm_Chr7g0195671
rosa_laevigata	RLG00000026346
rosa_multiflora	Rmu_sc0003314.1_g000015 Rmu_sc0004184.1_g000018 Rmu_sc0016754.1_g000001 Rmu_sc0035510.1_g000001
rosa_roxburghii	Rroxscaffold_3G00260230 Rroxscaffold_4G00279830
rosa_rugosa	Rorug01G0415900 Rorug07G0025600
rosa_samantha	Rh1AG440400 Rh1BG396200 Rh1DG427000 Rh7AG153400 Rh7BG154600 Rh7CG158600 Rh7CG158700
rosa_wichuraiana	Rw1G038290 Rw7G013100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	494
AccBSI	CCGCTC	1 cut(s)	535
AccI	GTMKAC	1 cut(s)	198
AciI	CCGC	6 cut(s)	39, 93, 249, 272, 376, 535
AcoI	YGGCCR	4 cut(s)	11, 90, 109, 587
AcsI	RAATTY	2 cut(s)	803, 980
AfaI	GTAC	2 cut(s)	851, 1018
AfiI	CCNNNNNNNGG	1 cut(s)	494
AjnI	CCWGG	2 cut(s)	687, 1003
AleI	CACNNNNGTG	1 cut(s)	778
AluBI	AGCT	6 cut(s)	221, 244, 303, 340, 347, 428
AluI	AGCT	6 cut(s)	221, 244, 303, 340, 347, 428
Alw26I	GTCTC	2 cut(s)	85, 492
AoxI	GGCC	4 cut(s)	11, 90, 109, 587
ApeKI	GCWGC	3 cut(s)	128, 241, 987
ApoI	RAATTY	2 cut(s)	803, 980
ArsI	GACNNNNNNTTYG	2 cut(s)	290, 322
AspS9I	GGNCC	1 cut(s)	537
AsuHPI	GGTGA	3 cut(s)	64, 434, 854
AvaII	GGWCC	1 cut(s)	537
BalI	TGGCCA	1 cut(s)	589
BanII	GRGCYC	1 cut(s)	325
BbsI	GAAGAC	1 cut(s)	751
BbvI	GCAGC	3 cut(s)	115, 253, 974
BccI	CCATC	1 cut(s)	104
BceAI	ACGGC	1 cut(s)	1007
BciT130I	CCWGG	2 cut(s)	689, 1005
BciVI	GTATCC	1 cut(s)	202
BcoDI	GTCTC	2 cut(s)	85, 492
BfaI	CTAG	1 cut(s)	861
BfmI	CTRYAG	2 cut(s)	417, 621
BfuI	GTATCC	1 cut(s)	202
BisI	GCNGC	5 cut(s)	93, 129, 242, 273, 988
BlsI	GCNGC	5 cut(s)	94, 130, 243, 274, 989
Bme1390I	CCNGG	2 cut(s)	689, 1005
Bme18I	GGWCC	1 cut(s)	537
BmgT120I	GGNCC	1 cut(s)	537
BmiI	GGNNCC	1 cut(s)	37
BmrFI	CCNGG	2 cut(s)	689, 1005
BmrI	ACTGGG	1 cut(s)	640
BmsI	GCATC	8 cut(s)	115, 249, 402, 465, 584, 625, 802, 990
BmuI	ACTGGG	1 cut(s)	640
BpiI	GAAGAC	1 cut(s)	751
BpuEI	CTTGAG	1 cut(s)	275
BsaI	GGTCTC	1 cut(s)	85
BsaJI	CCNNGG	4 cut(s)	75, 87, 688, 867
Bsc4I	CCNNNNNNNGG	1 cut(s)	494
Bse118I	RCCGGY	3 cut(s)	9, 24, 107
Bse1I	ACTGG	2 cut(s)	635, 800
BseBI	CCWGG	2 cut(s)	689, 1005
BseDI	CCNNGG	4 cut(s)	75, 87, 688, 867
BseGI	GGATG	4 cut(s)	130, 417, 640, 1005
BseLI	CCNNNNNNNGG	1 cut(s)	494
BseMII	CTCAG	1 cut(s)	570
BseNI	ACTGG	2 cut(s)	635, 800
BseRI	GAGGAG	2 cut(s)	596, 982
BseX3I	CGGCCG	2 cut(s)	11, 109
BseXI	GCAGC	3 cut(s)	115, 253, 974
BseYI	CCCAGC	1 cut(s)	932
Bsh1285I	CGRYCG	2 cut(s)	14, 112
BshFI	GGCC	4 cut(s)	13, 92, 111, 589
BsiEI	CGRYCG	2 cut(s)	14, 112
BsiSI	CCGG	3 cut(s)	10, 25, 108
BslFI	GGGAC	1 cut(s)	278
BslI	CCNNNNNNNGG	1 cut(s)	494
BsmAI	GTCTC	2 cut(s)	85, 492
BsmFI	GGGAC	1 cut(s)	278
BsnI	GGCC	4 cut(s)	13, 92, 111, 589
Bso31I	GGTCTC	1 cut(s)	85
Bsp1286I	GDGCHC	1 cut(s)	325
Bsp1407I	TGTACA	1 cut(s)	1016
Bsp143I	GATC	1 cut(s)	562
Bsp19I	CCATGG	2 cut(s)	75, 87
BspACI	CCGC	6 cut(s)	39, 93, 249, 272, 376, 535
BspANI	GGCC	4 cut(s)	13, 92, 111, 589
BspCNI	CTCAG	1 cut(s)	571
BspHI	TCATGA	1 cut(s)	916
BspLI	GGNNCC	1 cut(s)	37
BspTNI	GGTCTC	1 cut(s)	85
BsrBI	CCGCTC	1 cut(s)	535
BsrFI	RCCGGY	3 cut(s)	9, 24, 107
BsrGI	TGTACA	1 cut(s)	1016
BsrI	ACTGG	2 cut(s)	635, 800
BssAI	RCCGGY	3 cut(s)	9, 24, 107
BssECI	CCNNGG	4 cut(s)	75, 87, 688, 867
BssMI	GATC	1 cut(s)	562
BssT1I	CCWWGG	3 cut(s)	75, 87, 867
Bst2UI	CCWGG	2 cut(s)	689, 1005
Bst4CI	ACNGT	2 cut(s)	117, 503
BstAUI	TGTACA	1 cut(s)	1016
BstC8I	GCNNGC	4 cut(s)	11, 26, 109, 223
BstDEI	CTNAG	2 cut(s)	330, 579
BstDSI	CCRYGG	2 cut(s)	75, 87
BstF5I	GGATG	4 cut(s)	130, 417, 640, 1005
BstKTI	GATC	1 cut(s)	565
BstMAI	GTCTC	2 cut(s)	85, 492
BstMBI	GATC	1 cut(s)	562
BstMCI	CGRYCG	2 cut(s)	14, 112
BstMWI	GCNNNNNNNGC	3 cut(s)	10, 25, 238
BstNI	CCWGG	2 cut(s)	689, 1005
BstNSI	RCATGY	1 cut(s)	836
BstSCI	CCNGG	2 cut(s)	687, 1003
BstSFI	CTRYAG	2 cut(s)	417, 621
BstV1I	GCAGC	3 cut(s)	115, 253, 974
BstV2I	GAAGAC	1 cut(s)	751
BstXI	CCANNNNNNTGG	1 cut(s)	798
BstZI	CGGCCG	2 cut(s)	11, 109
BsuI	GTATCC	1 cut(s)	202
BsuRI	GGCC	4 cut(s)	13, 92, 111, 589
BtgI	CCRYGG	2 cut(s)	75, 87
BtgZI	GCGATG	1 cut(s)	825
BtsCI	GGATG	4 cut(s)	130, 417, 640, 1005
Cac8I	GCNNGC	4 cut(s)	11, 26, 109, 223
CciI	TCATGA	1 cut(s)	916
Cfr10I	RCCGGY	3 cut(s)	9, 24, 107
Cfr13I	GGNCC	1 cut(s)	537
Csp6I	GTAC	2 cut(s)	850, 1017
CviAII	CATG	8 cut(s)	76, 88, 617, 725, 742, 833, 917, 939
CviQI	GTAC	2 cut(s)	850, 1017
DdeI	CTNAG	2 cut(s)	330, 579
DpnI	GATC	1 cut(s)	564
DpnII	GATC	1 cut(s)	562
EaeI	YGGCCR	4 cut(s)	11, 90, 109, 587
EagI	CGGCCG	2 cut(s)	11, 109
EciI	GGCGGA	1 cut(s)	238
EclXI	CGGCCG	2 cut(s)	11, 109
Eco130I	CCWWGG	3 cut(s)	75, 87, 867
Eco24I	GRGCYC	1 cut(s)	325
Eco31I	GGTCTC	1 cut(s)	85
Eco47I	GGWCC	1 cut(s)	537
Eco52I	CGGCCG	2 cut(s)	11, 109
EcoRII	CCWGG	2 cut(s)	687, 1003
EcoT14I	CCWWGG	3 cut(s)	75, 87, 867
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	325
ErhI	CCWWGG	3 cut(s)	75, 87, 867
FaeI	CATG	8 cut(s)	79, 91, 620, 728, 745, 836, 920, 942
FaqI	GGGAC	1 cut(s)	278
FatI	CATG	8 cut(s)	75, 87, 616, 724, 741, 832, 916, 938
FblI	GTMKAC	1 cut(s)	198
Fnu4HI	GCNGC	5 cut(s)	93, 129, 242, 273, 988
FokI	GGATG	4 cut(s)	137, 424, 647, 1012
FriOI	GRGCYC	1 cut(s)	325
Fsp4HI	GCNGC	5 cut(s)	93, 129, 242, 273, 988
FspBI	CTAG	1 cut(s)	861
GluI	GCNGC	5 cut(s)	93, 129, 242, 273, 988
GsaI	CCCAGC	1 cut(s)	936
HaeIII	GGCC	4 cut(s)	13, 92, 111, 589
HapII	CCGG	3 cut(s)	10, 25, 108
Hin1II	CATG	8 cut(s)	79, 91, 620, 728, 745, 836, 920, 942
HindIII	AAGCTT	1 cut(s)	338
HinfI	GANTC	1 cut(s)	148
HpaII	CCGG	3 cut(s)	10, 25, 108
HphI	GGTGA	3 cut(s)	64, 434, 854
Hpy166II	GTNNAC	1 cut(s)	199
Hpy188I	TCNGA	3 cut(s)	54, 580, 766
Hpy188III	TCNNGA	3 cut(s)	152, 861, 917
Hpy8I	GTNNAC	1 cut(s)	199
Hpy99I	CGWCG	2 cut(s)	19, 107
HpyAV	CCTTC	1 cut(s)	278
HpyCH4III	ACNGT	2 cut(s)	117, 503
HpyCH4IV	ACGT	1 cut(s)	102
HpyCH4V	TGCA	5 cut(s)	4, 225, 262, 741, 815
HpyF10VI	GCNNNNNNNGC	3 cut(s)	10, 25, 238
HpyF3I	CTNAG	2 cut(s)	330, 579
HpySE526I	ACGT	1 cut(s)	102
Hsp92II	CATG	8 cut(s)	79, 91, 620, 728, 745, 836, 920, 942
KroI	GCCGGC	3 cut(s)	9, 24, 107
KroNI	GCCGGC	3 cut(s)	11, 26, 109
Kzo9I	GATC	1 cut(s)	562
LmnI	GCTCC	5 cut(s)	41, 229, 692, 995, 1007
Lsp1109I	GCAGC	3 cut(s)	115, 253, 974
LweI	GCATC	8 cut(s)	115, 249, 402, 465, 584, 625, 802, 990
MaeI	CTAG	1 cut(s)	861
MaeII	ACGT	1 cut(s)	102
MalI	GATC	1 cut(s)	564
MbiI	CCGCTC	1 cut(s)	535
MboI	GATC	1 cut(s)	562
MboII	GAAGA	5 cut(s)	346, 492, 536, 751, 893
MhlI	GDGCHC	1 cut(s)	325
MlsI	TGGCCA	1 cut(s)	589
MluCI	AATT	7 cut(s)	213, 357, 396, 803, 845, 875, 980
MluNI	TGGCCA	1 cut(s)	589
MnlI	CCTC	6 cut(s)	310, 385, 565, 574, 732, 1003
Mox20I	TGGCCA	1 cut(s)	589
Mph1103I	ATGCAT	1 cut(s)	6
MroNI	GCCGGC	3 cut(s)	9, 24, 107
MscI	TGGCCA	1 cut(s)	589
MseI	TTAA	3 cut(s)	210, 651, 675
MslI	CAYNNNNRTG	4 cut(s)	461, 778, 921, 969
Msp20I	TGGCCA	1 cut(s)	589
MspA1I	CMGCKG	1 cut(s)	244
MspI	CCGG	3 cut(s)	10, 25, 108
MspR9I	CCNGG	2 cut(s)	689, 1005
MvaI	CCWGG	2 cut(s)	689, 1005
MwoI	GCNNNNNNNGC	3 cut(s)	10, 25, 238
NaeI	GCCGGC	3 cut(s)	11, 26, 109
NcoI	CCATGG	2 cut(s)	75, 87
NdeII	GATC	1 cut(s)	562
NgoMIV	GCCGGC	3 cut(s)	9, 24, 107
NlaIII	CATG	8 cut(s)	79, 91, 620, 728, 745, 836, 920, 942
NlaIV	GGNNCC	1 cut(s)	37
NmeAIII	GCCGAG	1 cut(s)	664
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	836
OliI	CACNNNNGTG	1 cut(s)	778
PagI	TCATGA	1 cut(s)	916
PdiI	GCCGGC	3 cut(s)	11, 26, 109
PfeI	GAWTC	1 cut(s)	148
PflMI	CCANNNNNTGG	1 cut(s)	494
PkrI	GCNGC	5 cut(s)	94, 130, 243, 274, 989
Psp6I	CCWGG	2 cut(s)	687, 1003
PspFI	CCCAGC	1 cut(s)	932
PspGI	CCWGG	2 cut(s)	687, 1003
PspN4I	GGNNCC	1 cut(s)	37
PspPI	GGNCC	1 cut(s)	537
PvuII	CAGCTG	1 cut(s)	244
RsaI	GTAC	2 cut(s)	851, 1018
RsaNI	GTAC	2 cut(s)	850, 1017
RseI	CAYNNNNRTG	4 cut(s)	461, 778, 921, 969
SaqAI	TTAA	3 cut(s)	210, 651, 675
SatI	GCNGC	5 cut(s)	93, 129, 242, 273, 988
Sau3AI	GATC	1 cut(s)	562
Sau96I	GGNCC	1 cut(s)	537
ScrFI	CCNGG	2 cut(s)	689, 1005
SduI	GDGCHC	1 cut(s)	325
SfaNI	GCATC	8 cut(s)	115, 249, 402, 465, 584, 625, 802, 990
SfcI	CTRYAG	2 cut(s)	417, 621
SinI	GGWCC	1 cut(s)	537
SmiMI	CAYNNNNRTG	4 cut(s)	461, 778, 921, 969
SmlI	CTYRAG	1 cut(s)	254
SmoI	CTYRAG	1 cut(s)	254
Sse9I	AATT	7 cut(s)	213, 357, 396, 803, 845, 875, 980
SsiI	CCGC	6 cut(s)	39, 93, 249, 272, 376, 535
SspI	AATATT	1 cut(s)	679
SspMI	CTAG	1 cut(s)	861
StyD4I	CCNGG	2 cut(s)	687, 1003
StyI	CCWWGG	3 cut(s)	75, 87, 867
TaaI	ACNGT	2 cut(s)	117, 503
TaiI	ACGT	1 cut(s)	105
TasI	AATT	7 cut(s)	213, 357, 396, 803, 845, 875, 980
TatI	WGTACW	1 cut(s)	1016
TauI	GCSGC	2 cut(s)	95, 275
TfiI	GAWTC	1 cut(s)	148
Tru1I	TTAA	3 cut(s)	210, 651, 675
Tru9I	TTAA	3 cut(s)	210, 651, 675
TseI	GCWGC	3 cut(s)	128, 241, 987
TspDTI	ATGAA	5 cut(s)	462, 538, 605, 758, 987
TspGWI	ACGGA	2 cut(s)	184, 991
Van91I	CCANNNNNTGG	1 cut(s)	494
VpaK11BI	GGWCC	1 cut(s)	537
XapI	RAATTY	2 cut(s)	803, 980
XbaI	TCTAGA	1 cut(s)	860
XceI	RCATGY	1 cut(s)	836
XcmI	CCANNNNNNNNNTGG	1 cut(s)	777
XmiI	GTMKAC	1 cut(s)	198
XspI	CTAG	1 cut(s)	861
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.