Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003342.1

Orthogroup ID

OG0021552

Physical Location & Seq

Genomic Coordinates Reverse (-)

196635 .. 197012

Gene Structure 378 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003342.1_g000050.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

atgatgcgtgctcactacgtcctagcactcctcaccctcctctatcctctcttcgccgcaggtgcttctgctccgactggtcagtggaagcctgtagacctctacgatccgcttgtgacagatatcggaaagtttgcagtttacgaatacaactatcaatataagaaggatttgttctttcagaatgtgactaacggcgcctacaaggatgtcgcatattcgtcttactcgaatgccaccttgtatcagcttgtcattactgttcaaggctatgacaaaactcctaaccccaaacttgcagtatatcaggctaccgtcttccgtaggacttgggatcgatttaagaaattgctctcctttgttaagatttcaaaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002020 GO:0003674 GO:0004857 GO:0004866 GO:0004869 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005623 GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0009892 GO:0009987 GO:0010029 GO:0010030 GO:0010466 GO:0010605 GO:0010951 GO:0019222 GO:0019899 GO:0030162 GO:0030234 GO:0030312 GO:0030414 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0033554 GO:0034605 GO:0043086 GO:0044092 GO:0044464 GO:0045861 GO:0048518 GO:0048519 GO:0048523 GO:0048580 GO:0048582 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051172 GO:0051239 GO:0051240 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0051716 GO:0052547 GO:0052548 GO:0060255 GO:0061134 GO:0061135 GO:0065007 GO:0065009 GO:0071944 GO:0080090 GO:0098772 GO:1900140 GO:2000026 GO:2000116 GO:2000117

KEGG Pathways

Metabolic & Signaling

ko04970 map04970

Pfam Domains

Protein Families

SQAPI

Protein Analysis

125

Amino Acids

14.42

Weight (kDa)

9.52

Isoelectric Point (pI)

8.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021552)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000019900
rosa_multiflora	Rmu_sc0003342.1_g000050
rosa_roxburghii	Rroxscaffold_2G00104440
rosa_rugosa	Rorug02G0365500
rosa_samantha	Rh2BG426600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	50
Acc36I	ACCTGC	1 cut(s)	50
AccB1I	GGYRCC	1 cut(s)	197
AccI	GTMKAC	1 cut(s)	96
AciI	CCGC	2 cut(s)	57, 110
AclWI	GGATC	2 cut(s)	101, 342
AcyI	GRCGYC	1 cut(s)	198
AgsI	TTSAA	2 cut(s)	266, 372
AluBI	AGCT	1 cut(s)	250
AluI	AGCT	1 cut(s)	250
Alw21I	GWGCWC	1 cut(s)	13
AlwI	GGATC	2 cut(s)	101, 342
AspLEI	GCGC	1 cut(s)	200
AsuHPI	GGTGA	1 cut(s)	25
BanI	GGYRCC	1 cut(s)	197
BbsI	GAAGAC	1 cut(s)	310
Bbv12I	GWGCWC	1 cut(s)	13
BceAI	ACGGC	1 cut(s)	211
BfaI	CTAG	1 cut(s)	23
BfmI	CTRYAG	1 cut(s)	93
BfoI	RGCGCY	1 cut(s)	201
BfuAI	ACCTGC	1 cut(s)	50
BisI	GCNGC	1 cut(s)	57
BlsI	GCNGC	1 cut(s)	58
BmiI	GGNNCC	1 cut(s)	199
BpiI	GAAGAC	1 cut(s)	310
Bsa29I	ATCGAT	1 cut(s)	337
BsaHI	GRCGYC	1 cut(s)	198
Bse1I	ACTGG	1 cut(s)	82
BseCI	ATCGAT	1 cut(s)	337
BseGI	GGATG	1 cut(s)	214
BseNI	ACTGG	1 cut(s)	82
BseRI	GAGGAG	2 cut(s)	20, 29
BshNI	GGYRCC	1 cut(s)	197
BshVI	ATCGAT	1 cut(s)	337
BsiHKAI	GWGCWC	1 cut(s)	13
BsmI	GAATGC	1 cut(s)	238
Bsp1286I	GDGCHC	1 cut(s)	13
Bsp143I	GATC	2 cut(s)	106, 334
BspACI	CCGC	2 cut(s)	57, 110
BspDI	ATCGAT	1 cut(s)	337
BspLI	GGNNCC	1 cut(s)	199
BspMI	ACCTGC	1 cut(s)	50
BspPI	GGATC	2 cut(s)	101, 342
BspT107I	GGYRCC	1 cut(s)	197
BsrI	ACTGG	1 cut(s)	82
BssMI	GATC	2 cut(s)	106, 334
BssNI	GRCGYC	1 cut(s)	198
Bst4CI	ACNGT	2 cut(s)	262, 316
Bst6I	CTCTTC	1 cut(s)	56
BstACI	GRCGYC	1 cut(s)	198
BstC8I	GCNNGC	1 cut(s)	9
BstF5I	GGATG	1 cut(s)	214
BstH2I	RGCGCY	1 cut(s)	201
BstHHI	GCGC	1 cut(s)	200
BstKTI	GATC	2 cut(s)	109, 337
BstMBI	GATC	2 cut(s)	106, 334
BstMWI	GCNNNNNNNGC	1 cut(s)	62
BstSFI	CTRYAG	1 cut(s)	93
BstV2I	GAAGAC	1 cut(s)	310
Bsu15I	ATCGAT	1 cut(s)	337
BsuTUI	ATCGAT	1 cut(s)	337
BtsCI	GGATG	1 cut(s)	214
BtsIMutI	CAGTG	1 cut(s)	89
BveI	ACCTGC	1 cut(s)	50
Cac8I	GCNNGC	1 cut(s)	9
CfoI	GCGC	1 cut(s)	200
ClaI	ATCGAT	1 cut(s)	337
CviJI	RGCY	4 cut(s)	91, 250, 270, 311
CviKI_1	RGCY	4 cut(s)	91, 250, 270, 311
DinI	GGCGCC	1 cut(s)	199
DpnI	GATC	2 cut(s)	108, 336
DpnII	GATC	2 cut(s)	106, 334
Eam1104I	CTCTTC	1 cut(s)	56
EarI	CTCTTC	1 cut(s)	56
Eco32I	GATATC	1 cut(s)	124
EcoRV	GATATC	1 cut(s)	124
EgeI	GGCGCC	1 cut(s)	199
EheI	GGCGCC	1 cut(s)	199
FaiI	YATR	4 cut(s)	162, 217, 273, 304
FblI	GTMKAC	1 cut(s)	96
Fnu4HI	GCNGC	1 cut(s)	57
FokI	GGATG	1 cut(s)	221
Fsp4HI	GCNGC	1 cut(s)	57
FspBI	CTAG	1 cut(s)	23
GlaI	GCGC	1 cut(s)	199
GluI	GCNGC	1 cut(s)	57
HaeII	RGCGCY	1 cut(s)	201
HhaI	GCGC	1 cut(s)	200
Hin1I	GRCGYC	1 cut(s)	198
Hin6I	GCGC	1 cut(s)	198
HinP1I	GCGC	1 cut(s)	198
HphI	GGTGA	1 cut(s)	25
Hpy166II	GTNNAC	2 cut(s)	97, 142
Hpy188I	TCNGA	3 cut(s)	75, 128, 183
Hpy8I	GTNNAC	2 cut(s)	97, 142
HpyAV	CCTTC	1 cut(s)	160
HpyCH4III	ACNGT	2 cut(s)	262, 316
HpyCH4IV	ACGT	1 cut(s)	18
HpyCH4V	TGCA	2 cut(s)	137, 299
HpyF10VI	GCNNNNNNNGC	1 cut(s)	62
HpySE526I	ACGT	1 cut(s)	18
Hsp92I	GRCGYC	1 cut(s)	198
HspAI	GCGC	1 cut(s)	198
KasI	GGCGCC	1 cut(s)	197
Kzo9I	GATC	2 cut(s)	106, 334
LmnI	GCTCC	1 cut(s)	76
LpnPI	CCDG	4 cut(s)	45, 63, 105, 293
MaeI	CTAG	1 cut(s)	23
MaeII	ACGT	1 cut(s)	18
MaeIII	GTNAC	2 cut(s)	115, 187
MalI	GATC	2 cut(s)	108, 336
MboI	GATC	2 cut(s)	106, 334
MboII	GAAGA	2 cut(s)	43, 310
MhlI	GDGCHC	1 cut(s)	13
MluCI	AATT	1 cut(s)	347
Mly113I	GGCGCC	1 cut(s)	198
MmeI	TCCRAC	1 cut(s)	98
MnlI	CCTC	5 cut(s)	41, 47, 50, 57, 110
MseI	TTAA	2 cut(s)	342, 363
Mva1269I	GAATGC	1 cut(s)	238
MwoI	GCNNNNNNNGC	1 cut(s)	62
NarI	GGCGCC	1 cut(s)	198
NdeII	GATC	2 cut(s)	106, 334
NlaIV	GGNNCC	1 cut(s)	199
NmuCI	GTSAC	2 cut(s)	115, 187
PaqCI	CACCTGC	1 cut(s)	50
PcsI	WCGNNNNNNNCGW	1 cut(s)	227
PctI	GAATGC	1 cut(s)	238
PkrI	GCNGC	1 cut(s)	58
PluTI	GGCGCC	1 cut(s)	201
PspN4I	GGNNCC	1 cut(s)	199
SaqAI	TTAA	2 cut(s)	342, 363
SatI	GCNGC	1 cut(s)	57
Sau3AI	GATC	2 cut(s)	106, 334
SduI	GDGCHC	1 cut(s)	13
SetI	ASST	5 cut(s)	21, 64, 102, 242, 252
SfcI	CTRYAG	1 cut(s)	93
SfoI	GGCGCC	1 cut(s)	199
Sse9I	AATT	1 cut(s)	347
SsiI	CCGC	2 cut(s)	57, 110
SspDI	GGCGCC	1 cut(s)	197
SspMI	CTAG	1 cut(s)	23
TaaI	ACNGT	2 cut(s)	262, 316
TaiI	ACGT	1 cut(s)	21
TaqI	TCGA	2 cut(s)	230, 337
TasI	AATT	1 cut(s)	347
TauI	GCSGC	1 cut(s)	59
Tru1I	TTAA	2 cut(s)	342, 363
Tru9I	TTAA	2 cut(s)	342, 363
TscAI	CASTG	1 cut(s)	89
TseFI	GTSAC	2 cut(s)	115, 187
Tsp45I	GTSAC	2 cut(s)	115, 187
TspGWI	ACGGA	1 cut(s)	311
TspRI	CASTG	1 cut(s)	89
XmiI	GTMKAC	1 cut(s)	96
XspI	CTAG	1 cut(s)	23

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.