Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0021552

Physical Location & Seq

Genomic Coordinates Reverse (-)

60129224 .. 60129598

Gene Structure 375 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG426600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGCGTGCTCACTACGTCCTAGCACTCCTCACCCTCCTCTATCCTCTCTTCGCCGCAGGTGCTTCTGCTCCGACTGGTCAGTGGAAGCCTGTAGACCTCTACGATCCGCTTGTGACAGATATCGGAAAGTTTGCAGTTTACGAATACAACTATCAATATAAGAAGGATTTGTTCTTTCAGAATGTGACTAACGGCGCCTACAAGGATGTCGCATATTCGTCTTACTCGAATGCCACCTTGTATCAGCTTGTCATTACTGTTCAAGGCTATGACAAAACTCCTAACCCCAAACTTGCAGTATATCAGGCTACCGTCTTCCGTAGGACTTGGGATCGATTTAAGAAATTGCTCTCCTTTGTTAAGATTTCAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002020 GO:0003674 GO:0004857 GO:0004866 GO:0004869 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005623 GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0009892 GO:0009987 GO:0010029 GO:0010030 GO:0010466 GO:0010605 GO:0010951 GO:0019222 GO:0019899 GO:0030162 GO:0030234 GO:0030312 GO:0030414 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0033554 GO:0034605 GO:0043086 GO:0044092 GO:0044464 GO:0045861 GO:0048518 GO:0048519 GO:0048523 GO:0048580 GO:0048582 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051172 GO:0051239 GO:0051240 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0051716 GO:0052547 GO:0052548 GO:0060255 GO:0061134 GO:0061135 GO:0065007 GO:0065009 GO:0071944 GO:0080090 GO:0098772 GO:1900140 GO:2000026 GO:2000116 GO:2000117

KEGG Pathways

Metabolic & Signaling

ko04970 map04970

Pfam Domains

Protein Families

SQAPI

Protein Analysis

124

Amino Acids

14.29

Weight (kDa)

9.52

Isoelectric Point (pI)

8.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SQAPI	PF16845	32 - 121	7.5e-14	Aspartic acid proteinase inhibitor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0021552)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000019900
rosa_multiflora	Rmu_sc0003342.1_g000050
rosa_roxburghii	Rroxscaffold_2G00104440
rosa_rugosa	Rorug02G0365500
rosa_samantha	Rh2BG426600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	47
Acc36I	ACCTGC	1 cut(s)	47
AccB1I	GGYRCC	1 cut(s)	194
AccI	GTMKAC	1 cut(s)	93
AciI	CCGC	2 cut(s)	54, 107
AclWI	GGATC	2 cut(s)	98, 339
AcyI	GRCGYC	1 cut(s)	195
AgsI	TTSAA	2 cut(s)	263, 369
AluBI	AGCT	1 cut(s)	247
AluI	AGCT	1 cut(s)	247
Alw21I	GWGCWC	1 cut(s)	10
AlwI	GGATC	2 cut(s)	98, 339
AspLEI	GCGC	1 cut(s)	197
AsuHPI	GGTGA	1 cut(s)	22
BanI	GGYRCC	1 cut(s)	194
BbsI	GAAGAC	1 cut(s)	307
Bbv12I	GWGCWC	1 cut(s)	10
BceAI	ACGGC	1 cut(s)	208
BfaI	CTAG	1 cut(s)	20
BfmI	CTRYAG	1 cut(s)	90
BfoI	RGCGCY	1 cut(s)	198
BfuAI	ACCTGC	1 cut(s)	47
BisI	GCNGC	1 cut(s)	54
BlsI	GCNGC	1 cut(s)	55
BmiI	GGNNCC	1 cut(s)	196
BpiI	GAAGAC	1 cut(s)	307
Bsa29I	ATCGAT	1 cut(s)	334
BsaHI	GRCGYC	1 cut(s)	195
Bse1I	ACTGG	1 cut(s)	79
BseCI	ATCGAT	1 cut(s)	334
BseGI	GGATG	1 cut(s)	211
BseNI	ACTGG	1 cut(s)	79
BseRI	GAGGAG	2 cut(s)	17, 26
BshNI	GGYRCC	1 cut(s)	194
BshVI	ATCGAT	1 cut(s)	334
BsiHKAI	GWGCWC	1 cut(s)	10
BsmI	GAATGC	1 cut(s)	235
Bsp1286I	GDGCHC	1 cut(s)	10
Bsp143I	GATC	2 cut(s)	103, 331
BspACI	CCGC	2 cut(s)	54, 107
BspDI	ATCGAT	1 cut(s)	334
BspLI	GGNNCC	1 cut(s)	196
BspMI	ACCTGC	1 cut(s)	47
BspPI	GGATC	2 cut(s)	98, 339
BspT107I	GGYRCC	1 cut(s)	194
BsrI	ACTGG	1 cut(s)	79
BssMI	GATC	2 cut(s)	103, 331
BssNI	GRCGYC	1 cut(s)	195
Bst4CI	ACNGT	2 cut(s)	259, 313
Bst6I	CTCTTC	1 cut(s)	53
BstACI	GRCGYC	1 cut(s)	195
BstC8I	GCNNGC	1 cut(s)	6
BstF5I	GGATG	1 cut(s)	211
BstH2I	RGCGCY	1 cut(s)	198
BstHHI	GCGC	1 cut(s)	197
BstKTI	GATC	2 cut(s)	106, 334
BstMBI	GATC	2 cut(s)	103, 331
BstMWI	GCNNNNNNNGC	1 cut(s)	59
BstSFI	CTRYAG	1 cut(s)	90
BstV2I	GAAGAC	1 cut(s)	307
Bsu15I	ATCGAT	1 cut(s)	334
BsuTUI	ATCGAT	1 cut(s)	334
BtsCI	GGATG	1 cut(s)	211
BtsIMutI	CAGTG	1 cut(s)	86
BveI	ACCTGC	1 cut(s)	47
Cac8I	GCNNGC	1 cut(s)	6
CfoI	GCGC	1 cut(s)	197
ClaI	ATCGAT	1 cut(s)	334
CviJI	RGCY	4 cut(s)	88, 247, 267, 308
CviKI_1	RGCY	4 cut(s)	88, 247, 267, 308
DinI	GGCGCC	1 cut(s)	196
DpnI	GATC	2 cut(s)	105, 333
DpnII	GATC	2 cut(s)	103, 331
Eam1104I	CTCTTC	1 cut(s)	53
EarI	CTCTTC	1 cut(s)	53
Eco32I	GATATC	1 cut(s)	121
EcoRV	GATATC	1 cut(s)	121
EgeI	GGCGCC	1 cut(s)	196
EheI	GGCGCC	1 cut(s)	196
FaiI	YATR	4 cut(s)	159, 214, 270, 301
FblI	GTMKAC	1 cut(s)	93
Fnu4HI	GCNGC	1 cut(s)	54
FokI	GGATG	1 cut(s)	218
Fsp4HI	GCNGC	1 cut(s)	54
FspBI	CTAG	1 cut(s)	20
GlaI	GCGC	1 cut(s)	196
GluI	GCNGC	1 cut(s)	54
HaeII	RGCGCY	1 cut(s)	198
HhaI	GCGC	1 cut(s)	197
Hin1I	GRCGYC	1 cut(s)	195
Hin6I	GCGC	1 cut(s)	195
HinP1I	GCGC	1 cut(s)	195
HphI	GGTGA	1 cut(s)	22
Hpy166II	GTNNAC	2 cut(s)	94, 139
Hpy188I	TCNGA	3 cut(s)	72, 125, 180
Hpy8I	GTNNAC	2 cut(s)	94, 139
HpyAV	CCTTC	1 cut(s)	157
HpyCH4III	ACNGT	2 cut(s)	259, 313
HpyCH4IV	ACGT	1 cut(s)	15
HpyCH4V	TGCA	2 cut(s)	134, 296
HpyF10VI	GCNNNNNNNGC	1 cut(s)	59
HpySE526I	ACGT	1 cut(s)	15
Hsp92I	GRCGYC	1 cut(s)	195
HspAI	GCGC	1 cut(s)	195
KasI	GGCGCC	1 cut(s)	194
Kzo9I	GATC	2 cut(s)	103, 331
LmnI	GCTCC	1 cut(s)	73
LpnPI	CCDG	4 cut(s)	42, 60, 102, 290
MaeI	CTAG	1 cut(s)	20
MaeII	ACGT	1 cut(s)	15
MaeIII	GTNAC	2 cut(s)	112, 184
MalI	GATC	2 cut(s)	105, 333
MboI	GATC	2 cut(s)	103, 331
MboII	GAAGA	2 cut(s)	40, 307
MhlI	GDGCHC	1 cut(s)	10
MluCI	AATT	1 cut(s)	344
Mly113I	GGCGCC	1 cut(s)	195
MmeI	TCCRAC	1 cut(s)	95
MnlI	CCTC	5 cut(s)	38, 44, 47, 54, 107
MseI	TTAA	2 cut(s)	339, 360
Mva1269I	GAATGC	1 cut(s)	235
MwoI	GCNNNNNNNGC	1 cut(s)	59
NarI	GGCGCC	1 cut(s)	195
NdeII	GATC	2 cut(s)	103, 331
NlaIV	GGNNCC	1 cut(s)	196
NmuCI	GTSAC	2 cut(s)	112, 184
PaqCI	CACCTGC	1 cut(s)	47
PcsI	WCGNNNNNNNCGW	1 cut(s)	224
PctI	GAATGC	1 cut(s)	235
PkrI	GCNGC	1 cut(s)	55
PluTI	GGCGCC	1 cut(s)	198
PspN4I	GGNNCC	1 cut(s)	196
SaqAI	TTAA	2 cut(s)	339, 360
SatI	GCNGC	1 cut(s)	54
Sau3AI	GATC	2 cut(s)	103, 331
SduI	GDGCHC	1 cut(s)	10
SetI	ASST	5 cut(s)	18, 61, 99, 239, 249
SfcI	CTRYAG	1 cut(s)	90
SfoI	GGCGCC	1 cut(s)	196
Sse9I	AATT	1 cut(s)	344
SsiI	CCGC	2 cut(s)	54, 107
SspDI	GGCGCC	1 cut(s)	194
SspMI	CTAG	1 cut(s)	20
TaaI	ACNGT	2 cut(s)	259, 313
TaiI	ACGT	1 cut(s)	18
TaqI	TCGA	2 cut(s)	227, 334
TasI	AATT	1 cut(s)	344
TauI	GCSGC	1 cut(s)	56
Tru1I	TTAA	2 cut(s)	339, 360
Tru9I	TTAA	2 cut(s)	339, 360
TscAI	CASTG	1 cut(s)	86
TseFI	GTSAC	2 cut(s)	112, 184
Tsp45I	GTSAC	2 cut(s)	112, 184
TspGWI	ACGGA	1 cut(s)	308
TspRI	CASTG	1 cut(s)	86
XmiI	GTMKAC	1 cut(s)	93
XspI	CTAG	1 cut(s)	20

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.