Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003354.1

Orthogroup ID

OG0025561

Physical Location & Seq

Genomic Coordinates Reverse (-)

86390 .. 87511

Gene Structure 1122 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003354.1_g000022.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

atggaagctgaaccgctagataaatcgtcactgaccactcctcttatcgtggatgagcggcaatatgatgagccaggatgcaataccaagctagttgaagaagaactagagtccaacaattctcatcctcaaagtaaagccacaacatctactctcaaaacctgtttcaatggactcaatgctctctcaggagttgggatcctatcagttccttatgcactggcaactggagggtggtcaagcttagcacttctgtttttgttcgctgctgcagccttttactcaggcttgttaatcaagagattgcagtcctctgcatatatgctagaacttgtgttattgtgctcatcctgtgttccctaccctgtacacttctatgaaaaacaaaaaacagttctccaatgttctccttgtctgctttatattatgcaccatctgttatgcatcaatggcagtttttgggtacttaatgttcgggtcaacagttcaatcgcagataactctaaacctcccgactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0008150 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015318 GO:0015711 GO:0015849 GO:0022857 GO:0034220 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0098656 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

ko04721 ko04723 ko04727 ko05032 ko05033 map04721 map04723 map04727 map05032 map05033

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

172

Amino Acids

18.86

Weight (kDa)

5.52

Isoelectric Point (pI)

50.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0025561)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_co8269365.1_g000001 Rmu_sc0003354.1_g000022
rosa_samantha	Rh2DG626200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	58
AciI	CCGC	2 cut(s)	14, 58
AclWI	GGATC	2 cut(s)	193, 206
AfaI	GTAC	2 cut(s)	369, 465
AgsI	TTSAA	3 cut(s)	98, 169, 489
AjnI	CCWGG	1 cut(s)	73
AluBI	AGCT	3 cut(s)	8, 91, 243
AluI	AGCT	3 cut(s)	8, 91, 243
Alw21I	GWGCWC	1 cut(s)	347
AlwI	GGATC	2 cut(s)	193, 206
ApeKI	GCWGC	3 cut(s)	266, 269, 272
BamHI	GGATCC	1 cut(s)	198
Bbv12I	GWGCWC	1 cut(s)	347
BbvI	GCAGC	3 cut(s)	253, 256, 284
BccI	CCATC	1 cut(s)	441
BciT130I	CCWGG	1 cut(s)	75
BfaI	CTAG	5 cut(s)	17, 92, 107, 326, 517
BfmI	CTRYAG	1 cut(s)	270
BisI	GCNGC	4 cut(s)	59, 267, 270, 273
BlpI	GCTNAGC	1 cut(s)	244
BlsI	GCNGC	4 cut(s)	60, 268, 271, 274
Bme1390I	CCNGG	1 cut(s)	75
BmiI	GGNNCC	1 cut(s)	200
BmrFI	CCNGG	1 cut(s)	75
BmsI	GCATC	2 cut(s)	68, 453
BpmI	CTGGAG	1 cut(s)	249
Bpu1102I	GCTNAGC	1 cut(s)	244
Bse1I	ACTGG	2 cut(s)	225, 232
BseBI	CCWGG	1 cut(s)	75
BseGI	GGATG	4 cut(s)	58, 83, 124, 347
BseMII	CTCAG	2 cut(s)	201, 297
BseNI	ACTGG	2 cut(s)	225, 232
BseRI	GAGGAG	1 cut(s)	30
BseXI	GCAGC	3 cut(s)	253, 256, 284
BsiHKAI	GWGCWC	1 cut(s)	347
Bsp1286I	GDGCHC	1 cut(s)	347
Bsp1407I	TGTACA	1 cut(s)	367
Bsp143I	GATC	1 cut(s)	198
Bsp1720I	GCTNAGC	1 cut(s)	244
BspACI	CCGC	2 cut(s)	14, 58
BspCNI	CTCAG	2 cut(s)	200, 296
BspLI	GGNNCC	1 cut(s)	200
BspMAI	CTGCAG	1 cut(s)	274
BspPI	GGATC	2 cut(s)	193, 206
BsrBI	CCGCTC	1 cut(s)	58
BsrGI	TGTACA	1 cut(s)	367
BsrI	ACTGG	2 cut(s)	225, 232
BssMI	GATC	1 cut(s)	198
Bst2UI	CCWGG	1 cut(s)	75
Bst4CI	ACNGT	2 cut(s)	394, 485
BstAUI	TGTACA	1 cut(s)	367
BstDEI	CTNAG	3 cut(s)	187, 244, 283
BstF5I	GGATG	4 cut(s)	58, 83, 124, 347
BstKTI	GATC	1 cut(s)	201
BstMBI	GATC	1 cut(s)	198
BstMWI	GCNNNNNNNGC	2 cut(s)	272, 450
BstNI	CCWGG	1 cut(s)	75
BstSCI	CCNGG	1 cut(s)	73
BstSFI	CTRYAG	1 cut(s)	270
BstV1I	GCAGC	3 cut(s)	253, 256, 284
BstX2I	RGATCY	1 cut(s)	198
BstYI	RGATCY	1 cut(s)	198
BtsCI	GGATG	4 cut(s)	58, 83, 124, 347
BtsIMutI	CAGTG	2 cut(s)	29, 218
Csp6I	GTAC	2 cut(s)	368, 464
CviJI	RGCY	7 cut(s)	8, 73, 91, 140, 243, 275, 288
CviKI_1	RGCY	7 cut(s)	8, 73, 91, 140, 243, 275, 288
CviQI	GTAC	2 cut(s)	368, 464
DdeI	CTNAG	3 cut(s)	187, 244, 283
DpnI	GATC	1 cut(s)	200
DpnII	GATC	1 cut(s)	198
EcoRII	CCWGG	1 cut(s)	73
EcoT22I	ATGCAT	1 cut(s)	446
FaiI	YATR	9 cut(s)	66, 216, 319, 321, 323, 378, 423, 428, 442
Fnu4HI	GCNGC	4 cut(s)	59, 267, 270, 273
FokI	GGATG	4 cut(s)	65, 90, 111, 334
Fsp4HI	GCNGC	4 cut(s)	59, 267, 270, 273
FspBI	CTAG	5 cut(s)	17, 92, 107, 326, 517
GluI	GCNGC	4 cut(s)	59, 267, 270, 273
GsuI	CTGGAG	1 cut(s)	249
HincII	GTYRAC	1 cut(s)	481
HindII	GTYRAC	1 cut(s)	481
HindIII	AAGCTT	1 cut(s)	241
HinfI	GANTC	2 cut(s)	110, 174
Hpy166II	GTNNAC	2 cut(s)	370, 481
Hpy188III	TCNNGA	3 cut(s)	189, 298, 512
Hpy8I	GTNNAC	2 cut(s)	370, 481
HpyCH4III	ACNGT	2 cut(s)	394, 485
HpyCH4V	TGCA	7 cut(s)	81, 218, 272, 307, 317, 430, 444
HpyF10VI	GCNNNNNNNGC	2 cut(s)	272, 450
HpyF3I	CTNAG	3 cut(s)	187, 244, 283
Kzo9I	GATC	1 cut(s)	198
LpnPI	CCDG	9 cut(s)	60, 87, 174, 175, 206, 213, 270, 364, 378
Lsp1109I	GCAGC	3 cut(s)	253, 256, 284
LweI	GCATC	2 cut(s)	68, 453
MaeI	CTAG	5 cut(s)	17, 92, 107, 326, 517
MaeIII	GTNAC	1 cut(s)	27
MalI	GATC	1 cut(s)	200
MbiI	CCGCTC	1 cut(s)	58
MboI	GATC	1 cut(s)	198
MboII	GAAGA	2 cut(s)	110, 113
MflI	RGATCY	1 cut(s)	198
MhlI	GDGCHC	1 cut(s)	347
MluCI	AATT	1 cut(s)	118
MlyI	GAGTC	2 cut(s)	119, 168
MmeI	TCCRAC	1 cut(s)	138
MnlI	CCTC	5 cut(s)	51, 138, 224, 322, 519
Mph1103I	ATGCAT	1 cut(s)	446
MseI	TTAA	2 cut(s)	293, 468
MslI	CAYNNNNRTG	1 cut(s)	375
MspR9I	CCNGG	1 cut(s)	75
MvaI	CCWGG	1 cut(s)	75
MwoI	GCNNNNNNNGC	2 cut(s)	272, 450
NdeII	GATC	1 cut(s)	198
NlaIV	GGNNCC	1 cut(s)	200
NmuCI	GTSAC	1 cut(s)	27
NsiI	ATGCAT	1 cut(s)	446
PkrI	GCNGC	4 cut(s)	60, 268, 271, 274
PleI	GAGTC	2 cut(s)	118, 168
PpsI	GAGTC	2 cut(s)	118, 168
Psp6I	CCWGG	1 cut(s)	73
PspGI	CCWGG	1 cut(s)	73
PspN4I	GGNNCC	1 cut(s)	200
PsrI	GAACNNNNNNTAC	2 cut(s)	456, 488
PstI	CTGCAG	1 cut(s)	274
PsuI	RGATCY	1 cut(s)	198
RsaI	GTAC	2 cut(s)	369, 465
RsaNI	GTAC	2 cut(s)	368, 464
RseI	CAYNNNNRTG	1 cut(s)	375
SaqAI	TTAA	2 cut(s)	293, 468
SatI	GCNGC	4 cut(s)	59, 267, 270, 273
Sau3AI	GATC	1 cut(s)	198
SchI	GAGTC	2 cut(s)	119, 168
ScrFI	CCNGG	1 cut(s)	75
SduI	GDGCHC	1 cut(s)	347
SetI	ASST	5 cut(s)	10, 93, 164, 245, 511
SfaNI	GCATC	2 cut(s)	68, 453
SfcI	CTRYAG	1 cut(s)	270
SmiMI	CAYNNNNRTG	1 cut(s)	375
Sse9I	AATT	1 cut(s)	118
SsiI	CCGC	2 cut(s)	14, 58
SspMI	CTAG	5 cut(s)	17, 92, 107, 326, 517
StyD4I	CCNGG	1 cut(s)	73
TaaI	ACNGT	2 cut(s)	394, 485
TasI	AATT	1 cut(s)	118
TatI	WGTACW	1 cut(s)	367
TauI	GCSGC	1 cut(s)	61
Tru1I	TTAA	2 cut(s)	293, 468
Tru9I	TTAA	2 cut(s)	293, 468
TscAI	CASTG	2 cut(s)	36, 225
TseFI	GTSAC	1 cut(s)	27
TseI	GCWGC	3 cut(s)	266, 269, 272
Tsp45I	GTSAC	1 cut(s)	27
TspDTI	ATGAA	1 cut(s)	393
TspRI	CASTG	2 cut(s)	36, 225
XspI	CTAG	5 cut(s)	17, 92, 107, 326, 517
Zsp2I	ATGCAT	1 cut(s)	446

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.