Rh2DG626200

vacuolar amino acid transporter

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
Physical Location & Seq
Reverse (-)
85513788 .. 85515738
1951 bp
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UTR
Exon/CDS
Intron
Rh2DG626200.1

Sequence Viewer

Length: 240 bp
ATGGAAGCTGAACCGCTAGATAAATCGTCACTGACCACTCCTCTTATCGTGGATGAGCGGCGGCAATATGATGAGCCAGGATGCAATACCAAGCTAGTTGAAGAAGAACTAGAGTCCAACAATTCTCACCCTCAAAGTAAAGCCACAACATCTACTCTCAAAACCTGTTTCAATGGACTCAATGCTCTCTCAGGATTTGAAAGTCTTTCCTCAACTCGTAAAGATAGTGTTTTTGGTTAA

Protein Analysis

79

Amino Acids

8.68

Weight (kDa)

4.7

Isoelectric Point (pI)

45.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0025561)

Species Orthologous Gene IDs
rosa_multiflora Rmu_co8269365.1_g000001 Rmu_sc0003354.1_g000022
rosa_samantha Rh2DG626200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 58
AciI CCGC 3 cut(s) 14, 58, 61
AgsI TTSAA 3 cut(s) 101, 172, 200
AjnI CCWGG 1 cut(s) 76
AluBI AGCT 2 cut(s) 8, 94
AluI AGCT 2 cut(s) 8, 94
AsuHPI GGTGA 1 cut(s) 119
BciT130I CCWGG 1 cut(s) 78
BfaI CTAG 3 cut(s) 17, 95, 110
BisI GCNGC 2 cut(s) 59, 62
BlsI GCNGC 2 cut(s) 60, 63
Bme1390I CCNGG 1 cut(s) 78
BmrFI CCNGG 1 cut(s) 78
BmsI GCATC 1 cut(s) 71
BseBI CCWGG 1 cut(s) 78
BseGI GGATG 2 cut(s) 58, 86
BseMII CTCAG 1 cut(s) 204
BseRI GAGGAG 1 cut(s) 30
BspACI CCGC 3 cut(s) 14, 58, 61
BspCNI CTCAG 1 cut(s) 203
BsrBI CCGCTC 1 cut(s) 58
Bst2UI CCWGG 1 cut(s) 78
BstDEI CTNAG 1 cut(s) 190
BstF5I GGATG 2 cut(s) 58, 86
BstNI CCWGG 1 cut(s) 78
BstSCI CCNGG 1 cut(s) 76
BtsCI GGATG 2 cut(s) 58, 86
BtsIMutI CAGTG 1 cut(s) 29
CviJI RGCY 4 cut(s) 8, 76, 94, 143
CviKI_1 RGCY 4 cut(s) 8, 76, 94, 143
DdeI CTNAG 1 cut(s) 190
EcoRII CCWGG 1 cut(s) 76
FaiI YATR 1 cut(s) 69
Fnu4HI GCNGC 2 cut(s) 59, 62
FokI GGATG 2 cut(s) 65, 93
Fsp4HI GCNGC 2 cut(s) 59, 62
FspBI CTAG 3 cut(s) 17, 95, 110
GluI GCNGC 2 cut(s) 59, 62
HinfI GANTC 2 cut(s) 113, 177
HphI GGTGA 1 cut(s) 119
Hpy188III TCNNGA 1 cut(s) 192
HpyCH4V TGCA 1 cut(s) 84
HpyF3I CTNAG 1 cut(s) 190
LpnPI CCDG 4 cut(s) 63, 90, 177, 178
LweI GCATC 1 cut(s) 71
MaeI CTAG 3 cut(s) 17, 95, 110
MaeIII GTNAC 1 cut(s) 27
MbiI CCGCTC 1 cut(s) 58
MboII GAAGA 2 cut(s) 113, 116
MluCI AATT 1 cut(s) 121
MlyI GAGTC 2 cut(s) 122, 171
MmeI TCCRAC 1 cut(s) 141
MnlI CCTC 3 cut(s) 51, 141, 220
MseI TTAA 1 cut(s) 238
MspR9I CCNGG 1 cut(s) 78
MvaI CCWGG 1 cut(s) 78
NmuCI GTSAC 1 cut(s) 27
PkrI GCNGC 2 cut(s) 60, 63
PleI GAGTC 2 cut(s) 121, 171
PpsI GAGTC 2 cut(s) 121, 171
Psp6I CCWGG 1 cut(s) 76
PspGI CCWGG 1 cut(s) 76
SaqAI TTAA 1 cut(s) 238
SatI GCNGC 2 cut(s) 59, 62
SchI GAGTC 2 cut(s) 122, 171
ScrFI CCNGG 1 cut(s) 78
SetI ASST 3 cut(s) 10, 96, 167
SfaNI GCATC 1 cut(s) 71
Sse9I AATT 1 cut(s) 121
SsiI CCGC 3 cut(s) 14, 58, 61
SspMI CTAG 3 cut(s) 17, 95, 110
StyD4I CCNGG 1 cut(s) 76
TasI AATT 1 cut(s) 121
TauI GCSGC 2 cut(s) 61, 64
Tru1I TTAA 1 cut(s) 238
Tru9I TTAA 1 cut(s) 238
TscAI CASTG 1 cut(s) 36
TseFI GTSAC 1 cut(s) 27
Tsp45I GTSAC 1 cut(s) 27
TspRI CASTG 1 cut(s) 36
XspI CTAG 3 cut(s) 17, 95, 110
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.