Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003366.1

Orthogroup ID

OG0019947

Physical Location & Seq

Genomic Coordinates Forward (+)

25402 .. 25689

Gene Structure 288 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

atggaagaggtatgtgaaagcaaggacttctccttccccaaacatgaggagaagatcctcgagttttggtctgaaatcaatgccttcgagacccaattggctcgaaccaaggacatgccggagtatgtcttctacgacggtccagcttttgccactggcctcccatactatggccacctattggctggcaccatcaaggacattgtcacgcgctacccgtccatgactggccaccatgtcacgcgccgcgcgccgctttggctgggactgccatggcttgcctgttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004812 GO:0004822 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006428 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010035 GO:0010038 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0017101 GO:0019538 GO:0019752 GO:0019899 GO:0032991 GO:0034641 GO:0034645 GO:0034660 GO:0042221 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046686 GO:0050896 GO:0051020 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

Anticodon_1 tRNA-synt_1

Protein Analysis

95

Amino Acids

11.0

Weight (kDa)

5.46

Isoelectric Point (pI)

56.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA-synt_1	PF00133	18 - 83	2.9e-19	tRNA synthetases class I (I, L, M and V)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019947)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0060211
rosa_multiflora	Rmu_sc0000493.1_g000054 Rmu_sc0003366.1_g000006 Rmu_sc0007120.1_g000001 Rmu_ssc0000039.1_g000002
rosa_samantha	Rh5BG405000 Rh5CG429100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	188
AccB7I	CCANNNNNTGG	2 cut(s)	170, 181
AccII	CGCG	4 cut(s)	211, 244, 249, 251
AciI	CCGC	2 cut(s)	247, 254
AclWI	GGATC	1 cut(s)	49
AcoI	YGGCCR	2 cut(s)	172, 229
AfiI	CCNNNNNNNGG	2 cut(s)	170, 181
AluBI	AGCT	1 cut(s)	146
AluI	AGCT	1 cut(s)	146
Alw26I	GTCTC	1 cut(s)	83
AlwI	GGATC	1 cut(s)	49
Ama87I	CYCGRG	1 cut(s)	59
AoxI	GGCC	3 cut(s)	157, 172, 229
AspLEI	GCGC	4 cut(s)	213, 246, 251, 253
AspS9I	GGNCC	1 cut(s)	140
AvaI	CYCGRG	1 cut(s)	59
AvaII	GGWCC	1 cut(s)	140
BalI	TGGCCA	2 cut(s)	174, 231
BanI	GGYRCC	1 cut(s)	188
BbsI	GAAGAC	1 cut(s)	121
BccI	CCATC	1 cut(s)	200
BcoDI	GTCTC	1 cut(s)	83
BglI	GCCNNNNNGGC	1 cut(s)	259
BisI	GCNGC	2 cut(s)	247, 254
BlsI	GCNGC	2 cut(s)	248, 255
Bme18I	GGWCC	1 cut(s)	140
BmeT110I	CYCGRG	1 cut(s)	59
BmgT120I	GGNCC	1 cut(s)	140
BmiI	GGNNCC	1 cut(s)	190
BpiI	GAAGAC	1 cut(s)	121
BsaI	GGTCTC	1 cut(s)	83
BsaJI	CCNNGG	2 cut(s)	108, 272
Bsc4I	CCNNNNNNNGG	2 cut(s)	170, 181
Bse1I	ACTGG	2 cut(s)	160, 232
BseDI	CCNNGG	2 cut(s)	108, 272
BseLI	CCNNNNNNNGG	2 cut(s)	170, 181
BseNI	ACTGG	2 cut(s)	160, 232
BsePI	GCGCGC	1 cut(s)	249
BseRI	GAGGAG	1 cut(s)	62
BseYI	CCCAGC	1 cut(s)	262
Bsh1236I	CGCG	4 cut(s)	211, 244, 249, 251
BshFI	GGCC	3 cut(s)	159, 174, 231
BshNI	GGYRCC	1 cut(s)	188
BsiHKCI	CYCGRG	1 cut(s)	59
BsiSI	CCGG	1 cut(s)	119
BslFI	GGGAC	1 cut(s)	279
BslI	CCNNNNNNNGG	2 cut(s)	170, 181
BsmAI	GTCTC	1 cut(s)	83
BsmFI	GGGAC	1 cut(s)	279
BsnI	GGCC	3 cut(s)	159, 174, 231
Bso31I	GGTCTC	1 cut(s)	83
BsoBI	CYCGRG	1 cut(s)	59
Bsp143I	GATC	1 cut(s)	54
Bsp19I	CCATGG	1 cut(s)	272
BspACI	CCGC	2 cut(s)	247, 254
BspANI	GGCC	3 cut(s)	159, 174, 231
BspFNI	CGCG	4 cut(s)	211, 244, 249, 251
BspLI	GGNNCC	1 cut(s)	190
BspPI	GGATC	1 cut(s)	49
BspT107I	GGYRCC	1 cut(s)	188
BspTNI	GGTCTC	1 cut(s)	83
BsrI	ACTGG	2 cut(s)	160, 232
BssECI	CCNNGG	2 cut(s)	108, 272
BssHII	GCGCGC	1 cut(s)	249
BssMI	GATC	1 cut(s)	54
BssT1I	CCWWGG	2 cut(s)	108, 272
Bst4CI	ACNGT	1 cut(s)	140
BstC8I	GCNNGC	3 cut(s)	187, 251, 279
BstDSI	CCRYGG	1 cut(s)	272
BstFNI	CGCG	4 cut(s)	211, 244, 249, 251
BstHHI	GCGC	4 cut(s)	213, 246, 251, 253
BstKTI	GATC	1 cut(s)	57
BstMAI	GTCTC	1 cut(s)	83
BstMBI	GATC	1 cut(s)	54
BstMWI	GCNNNNNNNGC	3 cut(s)	250, 259, 268
BstNSI	RCATGY	1 cut(s)	118
BstUI	CGCG	4 cut(s)	211, 244, 249, 251
BstV2I	GAAGAC	1 cut(s)	121
BstX2I	RGATCY	1 cut(s)	54
BstYI	RGATCY	1 cut(s)	54
BsuRI	GGCC	3 cut(s)	159, 174, 231
BtgI	CCRYGG	1 cut(s)	272
BtsIMutI	CAGTG	1 cut(s)	153
Cac8I	GCNNGC	3 cut(s)	187, 251, 279
CfoI	GCGC	4 cut(s)	213, 246, 251, 253
Cfr13I	GGNCC	1 cut(s)	140
CviAII	CATG	5 cut(s)	44, 115, 223, 236, 273
CviJI	RGCY	8 cut(s)	101, 146, 159, 174, 185, 231, 262, 277
CviKI_1	RGCY	8 cut(s)	101, 146, 159, 174, 185, 231, 262, 277
DpnI	GATC	1 cut(s)	56
DpnII	GATC	1 cut(s)	54
EaeI	YGGCCR	2 cut(s)	172, 229
Eco130I	CCWWGG	2 cut(s)	108, 272
Eco31I	GGTCTC	1 cut(s)	83
Eco47I	GGWCC	1 cut(s)	140
Eco88I	CYCGRG	1 cut(s)	59
EcoT14I	CCWWGG	2 cut(s)	108, 272
ErhI	CCWWGG	2 cut(s)	108, 272
FaeI	CATG	5 cut(s)	47, 118, 226, 239, 276
FaiI	YATR	9 cut(s)	13, 45, 116, 126, 166, 171, 224, 237, 274
FaqI	GGGAC	1 cut(s)	279
FatI	CATG	5 cut(s)	43, 114, 222, 235, 272
Fnu4HI	GCNGC	2 cut(s)	247, 254
Fsp4HI	GCNGC	2 cut(s)	247, 254
GlaI	GCGC	4 cut(s)	212, 245, 250, 252
GluI	GCNGC	2 cut(s)	247, 254
GsaI	CCCAGC	1 cut(s)	266
HaeIII	GGCC	3 cut(s)	159, 174, 231
HapII	CCGG	1 cut(s)	119
HhaI	GCGC	4 cut(s)	213, 246, 251, 253
Hin1II	CATG	5 cut(s)	47, 118, 226, 239, 276
Hin6I	GCGC	4 cut(s)	211, 244, 249, 251
HinP1I	GCGC	4 cut(s)	211, 244, 249, 251
HpaII	CCGG	1 cut(s)	119
Hpy188I	TCNGA	1 cut(s)	73
Hpy188III	TCNNGA	1 cut(s)	88
Hpy99I	CGWCG	1 cut(s)	140
HpyAV	CCTTC	2 cut(s)	43, 94
HpyCH4III	ACNGT	1 cut(s)	140
HpyF10VI	GCNNNNNNNGC	3 cut(s)	250, 259, 268
Hsp92II	CATG	5 cut(s)	47, 118, 226, 239, 276
HspAI	GCGC	4 cut(s)	211, 244, 249, 251
Kzo9I	GATC	1 cut(s)	54
LpnPI	CCDG	6 cut(s)	132, 141, 156, 171, 213, 248
MaeIII	GTNAC	2 cut(s)	205, 238
MalI	GATC	1 cut(s)	56
MboI	GATC	1 cut(s)	54
MboII	GAAGA	3 cut(s)	17, 64, 121
MfeI	CAATTG	1 cut(s)	95
MflI	RGATCY	1 cut(s)	54
MlsI	TGGCCA	2 cut(s)	174, 231
MluCI	AATT	1 cut(s)	95
MluNI	TGGCCA	2 cut(s)	174, 231
MnlI	CCTC	3 cut(s)	40, 68, 170
Mox20I	TGGCCA	2 cut(s)	174, 231
MscI	TGGCCA	2 cut(s)	174, 231
Msp20I	TGGCCA	2 cut(s)	174, 231
MspI	CCGG	1 cut(s)	119
MteI	GCGCNGCGC	1 cut(s)	247
MunI	CAATTG	1 cut(s)	95
MvnI	CGCG	4 cut(s)	211, 244, 249, 251
MwoI	GCNNNNNNNGC	3 cut(s)	250, 259, 268
NcoI	CCATGG	1 cut(s)	272
NdeII	GATC	1 cut(s)	54
NlaIII	CATG	5 cut(s)	47, 118, 226, 239, 276
NlaIV	GGNNCC	1 cut(s)	190
NmuCI	GTSAC	2 cut(s)	205, 238
NspI	RCATGY	1 cut(s)	118
PaeR7I	CTCGAG	1 cut(s)	59
PauI	GCGCGC	1 cut(s)	249
PcsI	WCGNNNNNNNCGW	1 cut(s)	215
PflFI	GACNNNGTC	1 cut(s)	203
PflMI	CCANNNNNTGG	2 cut(s)	170, 181
PkrI	GCNGC	2 cut(s)	248, 255
PspFI	CCCAGC	1 cut(s)	262
PspN4I	GGNNCC	1 cut(s)	190
PspPI	GGNCC	1 cut(s)	140
PspXI	VCTCGAGB	1 cut(s)	59
PsuI	RGATCY	1 cut(s)	54
PsyI	GACNNNGTC	1 cut(s)	203
PteI	GCGCGC	1 cut(s)	249
SatI	GCNGC	2 cut(s)	247, 254
Sau3AI	GATC	1 cut(s)	54
Sau96I	GGNCC	1 cut(s)	140
SetI	ASST	3 cut(s)	12, 148, 180
Sfr274I	CTCGAG	1 cut(s)	59
SinI	GGWCC	1 cut(s)	140
SlaI	CTCGAG	1 cut(s)	59
SmlI	CTYRAG	1 cut(s)	59
SmoI	CTYRAG	1 cut(s)	59
Sse9I	AATT	1 cut(s)	95
SsiI	CCGC	2 cut(s)	247, 254
StyI	CCWWGG	2 cut(s)	108, 272
TaaI	ACNGT	1 cut(s)	140
TaqI	TCGA	3 cut(s)	60, 87, 103
TasI	AATT	1 cut(s)	95
TauI	GCSGC	2 cut(s)	249, 256
TscAI	CASTG	1 cut(s)	160
TseFI	GTSAC	2 cut(s)	205, 238
Tsp45I	GTSAC	2 cut(s)	205, 238
TspRI	CASTG	1 cut(s)	160
Tth111I	GACNNNGTC	1 cut(s)	203
Van91I	CCANNNNNTGG	2 cut(s)	170, 181
VpaK11BI	GGWCC	1 cut(s)	140
XceI	RCATGY	1 cut(s)	118
XcmI	CCANNNNNNNNNTGG	1 cut(s)	182
XhoI	CTCGAG	1 cut(s)	59

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.