Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003366.1

Orthogroup ID

OG0019935

Physical Location & Seq

Genomic Coordinates Forward (+)

28151 .. 29377

Gene Structure 1227 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1227 bp

atggacttgaagttcatggagagtgtgtggtgggtttttgctcaattatatgaaaagggtcttgtttacaaagacttcaaggtcatgctttacagcactggttgcaagacaccgctctccaattttgaggccggtaaaaatcacaaggatgtgtctgatcctgaaataatggtagctttcccaattgtcggtgatctggataaggcagcgtttgtggcttggacaactactccatggacccttcctagcaatttagccctgtttgtcaatccaaatttaacctatgtgaaggtttgcaacaggtgttctggaagagtttatgttgttgctgaatcccgggtttcatctctacctagtgagagacctagaggagctgcttatgacggttcaaacatttatgaagtgttggagagattctcagggactacactagtgggaaagaaggatgagccactttttgattacttcatggagttctcagatgtggcatttcgagttttgtccgacgattatgttaaaggtgacagtggtactggagttgttcactgtgctcctgcatttggtgaggatgactaccgcgtttgccttgcaaatgaaataatcaaaaagggagagggcttgattgtaccagttgatgagaatgggtgctttacagaaagagttgctgacttcagcaacctctatgtgaaggaggcagataaggctattattgaagcagtgaggctaaagggaagtcttgttaagtctggaaccataactcattcgtatcccttttgctggagaacaaacactccacttatctacagagctgttccaagctggtttatccgggtggagcagttgaaagaaaagttattggaaaacaacaagcagacgtattgggttcctgattttgtgaaggaaaagcgattccacaattggctagaaaatgcaagagattgggcggttagcagaagtagattttggggtactcctcttcctgtgtgggttagtgaggatggtgaggaagtactggtcatggattccattgagaagcttgaaaagctttctggtgttaaggtttctgatctgcaccgccattacattgatcatatcactattccatcggcgcgtggcactgaatttggttatcttcgacgtgtagacgatgtgtttgattgttggtttgagagtggatccatgccttatccttatatccactatcctttcgagaatgtggagctttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004812 GO:0004822 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006428 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010035 GO:0010038 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0017101 GO:0019538 GO:0019752 GO:0019899 GO:0032991 GO:0034641 GO:0034645 GO:0034660 GO:0042221 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046686 GO:0050896 GO:0051020 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

Anticodon_1 tRNA-synt_1

Protein Analysis

408

Amino Acids

46.77

Weight (kDa)

5.37

Isoelectric Point (pI)

31.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA-synt_1	PF00133	1 - 405	7.7e-61	tRNA synthetases class I (I, L, M and V)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019935)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0060201
rosa_multiflora	Rmu_sc0003366.1_g000008
rosa_samantha	Rh5AG392400 Rh5AG392500 Rh5BG404900 Rh5CG429000 Rh5DG420600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	80
AccBSI	CCGCTC	1 cut(s)	115
AccI	GTMKAC	1 cut(s)	1143
AccII	CGCG	2 cut(s)	579, 1111
AciI	CCGC	4 cut(s)	113, 577, 944, 1075
AclWI	GGATC	3 cut(s)	152, 1170, 1183
AcsI	RAATTY	2 cut(s)	274, 1121
AcuI	CTGAAG	1 cut(s)	655
AfaI	GTAC	4 cut(s)	532, 627, 970, 1011
AfiI	CCNNNNNNNGG	3 cut(s)	188, 560, 777
AflIII	ACRYGT	1 cut(s)	1138
AgsI	TTSAA	6 cut(s)	10, 79, 390, 713, 844, 1040
AhlI	ACTAGT	1 cut(s)	430
AjiI	CACGTC	1 cut(s)	1139
AjuI	GAANNNNNNNTTGG	2 cut(s)	946, 978
AloI	GAACNNNNNNTCC	3 cut(s)	28, 775, 807
AluBI	AGCT	7 cut(s)	176, 374, 809, 819, 1036, 1045, 1222
AluI	AGCT	7 cut(s)	176, 374, 809, 819, 1036, 1045, 1222
Alw21I	GWGCWC	1 cut(s)	553
Alw26I	GTCTC	1 cut(s)	355
AlwI	GGATC	3 cut(s)	152, 1170, 1183
Ama87I	CYCGRG	1 cut(s)	336
AoxI	GGCC	1 cut(s)	129
ApeKI	GCWGC	2 cut(s)	206, 374
ApoI	RAATTY	2 cut(s)	274, 1121
ArsI	GACNNNNNNTTYG	2 cut(s)	1136, 1168
AspLEI	GCGC	1 cut(s)	1111
AspS9I	GGNCC	1 cut(s)	237
AsuC2I	CCSGG	3 cut(s)	337, 338, 830
AsuHPI	GGTGA	4 cut(s)	203, 533, 575, 1013
AvaI	CYCGRG	1 cut(s)	336
AvaII	GGWCC	1 cut(s)	237
BaeI	ACNNNNGTAYC	2 cut(s)	522, 555
BamHI	GGATCC	1 cut(s)	1175
Bbv12I	GWGCWC	1 cut(s)	553
BbvI	GCAGC	2 cut(s)	218, 361
BccI	CCATC	2 cut(s)	992, 1111
BciVI	GTATCC	1 cut(s)	777
BclI	TGATCA	1 cut(s)	1087
BcnI	CCSGG	3 cut(s)	337, 338, 830
BcoDI	GTCTC	1 cut(s)	355
BcuI	ACTAGT	1 cut(s)	430
BfaI	CTAG	5 cut(s)	246, 354, 366, 431, 923
BfmI	CTRYAG	1 cut(s)	802
BfuI	GTATCC	1 cut(s)	777
BisI	GCNGC	2 cut(s)	207, 375
BlsI	GCNGC	2 cut(s)	208, 376
BmcAI	AGTACT	1 cut(s)	1011
Bme1390I	CCNGG	3 cut(s)	337, 338, 830
Bme18I	GGWCC	1 cut(s)	237
BmeT110I	CYCGRG	1 cut(s)	336
BmgBI	CACGTC	1 cut(s)	1139
BmgT120I	GGNCC	1 cut(s)	237
BmiI	GGNNCC	4 cut(s)	239, 751, 885, 1177
BmrFI	CCNGG	3 cut(s)	337, 338, 830
BplI	GAGNNNNNCTC	2 cut(s)	401, 433
BpmI	CTGGAG	2 cut(s)	555, 799
BpuMI	CCSGG	3 cut(s)	337, 338, 830
BsaI	GGTCTC	1 cut(s)	355
BsaJI	CCNNGG	2 cut(s)	233, 336
BsaXI	ACNNNNNCTCC	6 cut(s)	11, 41, 214, 244, 775, 805
Bsc4I	CCNNNNNNNGG	3 cut(s)	188, 560, 777
Bse118I	RCCGGY	1 cut(s)	131
Bse1I	ACTGG	4 cut(s)	103, 538, 629, 1017
BseDI	CCNNGG	2 cut(s)	233, 336
BseGI	GGATG	4 cut(s)	154, 451, 574, 1003
BseLI	CCNNNNNNNGG	3 cut(s)	188, 560, 777
BseMII	CTCAG	2 cut(s)	432, 492
BseNI	ACTGG	4 cut(s)	103, 538, 629, 1017
BseRI	GAGGAG	2 cut(s)	384, 963
BseXI	GCAGC	2 cut(s)	218, 361
BsgI	GTGCAG	1 cut(s)	1055
Bsh1236I	CGCG	2 cut(s)	579, 1111
BshFI	GGCC	1 cut(s)	131
BsiHKAI	GWGCWC	1 cut(s)	553
BsiHKCI	CYCGRG	1 cut(s)	336
BsiSI	CCGG	3 cut(s)	132, 337, 829
BslFI	GGGAC	1 cut(s)	436
BslI	CCNNNNNNNGG	3 cut(s)	188, 560, 777
BsmAI	GTCTC	1 cut(s)	355
BsmFI	GGGAC	1 cut(s)	436
BsnI	GGCC	1 cut(s)	131
Bso31I	GGTCTC	1 cut(s)	355
BsoBI	CYCGRG	1 cut(s)	336
Bsp1286I	GDGCHC	1 cut(s)	553
Bsp143I	GATC	5 cut(s)	157, 193, 1066, 1087, 1175
Bsp19I	CCATGG	1 cut(s)	233
BspACI	CCGC	4 cut(s)	113, 577, 944, 1075
BspANI	GGCC	1 cut(s)	131
BspCNI	CTCAG	2 cut(s)	431, 491
BspFNI	CGCG	2 cut(s)	579, 1111
BspLI	GGNNCC	4 cut(s)	239, 751, 885, 1177
BspPI	GGATC	3 cut(s)	152, 1170, 1183
BspTNI	GGTCTC	1 cut(s)	355
BsrBI	CCGCTC	1 cut(s)	115
BsrFI	RCCGGY	1 cut(s)	131
BsrI	ACTGG	4 cut(s)	103, 538, 629, 1017
BssAI	RCCGGY	1 cut(s)	131
BssECI	CCNNGG	2 cut(s)	233, 336
BssMI	GATC	5 cut(s)	157, 193, 1066, 1087, 1175
BssT1I	CCWWGG	1 cut(s)	233
Bst4CI	ACNGT	3 cut(s)	386, 527, 548
Bst6I	CTCTTC	2 cut(s)	307, 981
BstAPI	GCANNNNNTGC	1 cut(s)	102
BstDEI	CTNAG	2 cut(s)	418, 478
BstDSI	CCRYGG	1 cut(s)	233
BstF5I	GGATG	4 cut(s)	154, 451, 574, 1003
BstFNI	CGCG	2 cut(s)	579, 1111
BstHHI	GCGC	1 cut(s)	1111
BstKTI	GATC	5 cut(s)	160, 196, 1069, 1090, 1178
BstMAI	GTCTC	1 cut(s)	355
BstMBI	GATC	5 cut(s)	157, 193, 1066, 1087, 1175
BstMWI	GCNNNNNNNGC	4 cut(s)	102, 215, 701, 1042
BstSCI	CCNGG	3 cut(s)	335, 336, 828
BstSFI	CTRYAG	1 cut(s)	802
BstUI	CGCG	2 cut(s)	579, 1111
BstV1I	GCAGC	2 cut(s)	218, 361
BstX2I	RGATCY	1 cut(s)	1175
BstYI	RGATCY	1 cut(s)	1175
BsuI	GTATCC	1 cut(s)	777
BsuRI	GGCC	1 cut(s)	131
BtgI	CCRYGG	1 cut(s)	233
BtrI	CACGTC	1 cut(s)	1139
BtsCI	GGATG	4 cut(s)	154, 451, 574, 1003
BtsI	GCAGTG	1 cut(s)	723
BtsIMutI	CAGTG	5 cut(s)	96, 532, 544, 723, 1116
CfoI	GCGC	1 cut(s)	1111
Cfr10I	RCCGGY	1 cut(s)	131
Cfr13I	GGNCC	1 cut(s)	237
Cfr9I	CCCGGG	1 cut(s)	336
Csp6I	GTAC	4 cut(s)	531, 626, 969, 1010
CviAII	CATG	6 cut(s)	16, 85, 234, 469, 1018, 1180
CviQI	GTAC	4 cut(s)	531, 626, 969, 1010
DdeI	CTNAG	2 cut(s)	418, 478
DpnI	GATC	5 cut(s)	159, 195, 1068, 1089, 1177
DpnII	GATC	5 cut(s)	157, 193, 1066, 1087, 1175
DrdI	GACNNNNNNGTC	1 cut(s)	80
DseDI	GACNNNNNNGTC	1 cut(s)	80
Eam1104I	CTCTTC	2 cut(s)	307, 981
EarI	CTCTTC	2 cut(s)	307, 981
Eco130I	CCWWGG	1 cut(s)	233
Eco31I	GGTCTC	1 cut(s)	355
Eco47I	GGWCC	1 cut(s)	237
Eco57I	CTGAAG	1 cut(s)	655
Eco88I	CYCGRG	1 cut(s)	336
EcoT14I	CCWWGG	1 cut(s)	233
ErhI	CCWWGG	1 cut(s)	233
FaeI	CATG	6 cut(s)	19, 88, 237, 472, 1021, 1183
FaqI	GGGAC	1 cut(s)	436
FatI	CATG	6 cut(s)	15, 84, 233, 468, 1017, 1179
FbaI	TGATCA	1 cut(s)	1087
FblI	GTMKAC	1 cut(s)	1143
Fnu4HI	GCNGC	2 cut(s)	207, 375
FokI	GGATG	4 cut(s)	161, 458, 581, 1010
Fsp4HI	GCNGC	2 cut(s)	207, 375
FspBI	CTAG	5 cut(s)	246, 354, 366, 431, 923
GlaI	GCGC	1 cut(s)	1110
GluI	GCNGC	2 cut(s)	207, 375
GsuI	CTGGAG	2 cut(s)	555, 799
HaeIII	GGCC	1 cut(s)	131
HapII	CCGG	3 cut(s)	132, 337, 829
HhaI	GCGC	1 cut(s)	1111
Hin1II	CATG	6 cut(s)	19, 88, 237, 472, 1021, 1183
Hin6I	GCGC	1 cut(s)	1109
HinP1I	GCGC	1 cut(s)	1109
HindIII	AAGCTT	2 cut(s)	1034, 1043
HinfI	GANTC	4 cut(s)	332, 414, 909, 1022
HpaII	CCGG	3 cut(s)	132, 337, 829
HphI	GGTGA	4 cut(s)	203, 533, 575, 1013
Hpy166II	GTNNAC	3 cut(s)	67, 544, 1144
Hpy188I	TCNGA	4 cut(s)	157, 481, 505, 1066
Hpy188III	TCNNGA	6 cut(s)	161, 197, 309, 747, 887, 1210
Hpy8I	GTNNAC	3 cut(s)	67, 544, 1144
Hpy99I	CGWCG	2 cut(s)	509, 1140
HpyAV	CCTTC	5 cut(s)	251, 283, 436, 682, 892
HpyCH4III	ACNGT	3 cut(s)	386, 527, 548
HpyCH4IV	ACGT	2 cut(s)	875, 1138
HpyCH4V	TGCA	6 cut(s)	105, 297, 557, 590, 932, 1072
HpyF10VI	GCNNNNNNNGC	4 cut(s)	102, 215, 701, 1042
HpyF3I	CTNAG	2 cut(s)	418, 478
HpySE526I	ACGT	2 cut(s)	875, 1138
Hsp92II	CATG	6 cut(s)	19, 88, 237, 472, 1021, 1183
HspAI	GCGC	1 cut(s)	1109
Ksp22I	TGATCA	1 cut(s)	1087
Kzo9I	GATC	5 cut(s)	157, 193, 1066, 1087, 1175
LmnI	GCTCC	4 cut(s)	371, 556, 835, 1219
Lsp1109I	GCAGC	2 cut(s)	218, 361
MaeI	CTAG	5 cut(s)	246, 354, 366, 431, 923
MaeII	ACGT	2 cut(s)	875, 1138
MaeIII	GTNAC	1 cut(s)	521
MalI	GATC	5 cut(s)	159, 195, 1068, 1089, 1177
MbiI	CCGCTC	1 cut(s)	115
MboI	GATC	5 cut(s)	157, 193, 1066, 1087, 1175
MboII	GAAGA	3 cut(s)	324, 968, 1124
MfeI	CAATTG	2 cut(s)	183, 916
MflI	RGATCY	1 cut(s)	1175
MhlI	GDGCHC	1 cut(s)	553
MluCI	AATT	7 cut(s)	44, 121, 183, 250, 274, 916, 1121
MmeI	TCCRAC	2 cut(s)	387, 528
MseI	TTAA	4 cut(s)	278, 516, 741, 1056
MslI	CAYNNNNRTG	1 cut(s)	147
MspI	CCGG	3 cut(s)	132, 337, 829
MspR9I	CCNGG	3 cut(s)	337, 338, 830
MunI	CAATTG	2 cut(s)	183, 916
MvnI	CGCG	2 cut(s)	579, 1111
MwoI	GCNNNNNNNGC	4 cut(s)	102, 215, 701, 1042
NciI	CCSGG	3 cut(s)	337, 338, 830
NcoI	CCATGG	1 cut(s)	233
NdeII	GATC	5 cut(s)	157, 193, 1066, 1087, 1175
NlaIII	CATG	6 cut(s)	19, 88, 237, 472, 1021, 1183
NlaIV	GGNNCC	4 cut(s)	239, 751, 885, 1177
NmuCI	GTSAC	1 cut(s)	521
PfeI	GAWTC	4 cut(s)	332, 414, 909, 1022
PkrI	GCNGC	2 cut(s)	208, 376
PspN4I	GGNNCC	4 cut(s)	239, 751, 885, 1177
PspPI	GGNCC	1 cut(s)	237
PsuI	RGATCY	1 cut(s)	1175
RsaI	GTAC	4 cut(s)	532, 627, 970, 1011
RsaNI	GTAC	4 cut(s)	531, 626, 969, 1010
RseI	CAYNNNNRTG	1 cut(s)	147
SaqAI	TTAA	4 cut(s)	278, 516, 741, 1056
SatI	GCNGC	2 cut(s)	207, 375
Sau3AI	GATC	5 cut(s)	157, 193, 1066, 1087, 1175
Sau96I	GGNCC	1 cut(s)	237
ScaI	AGTACT	1 cut(s)	1011
ScrFI	CCNGG	3 cut(s)	337, 338, 830
SduI	GDGCHC	1 cut(s)	553
SfcI	CTRYAG	1 cut(s)	802
SinI	GGWCC	1 cut(s)	237
SmaI	CCCGGG	1 cut(s)	338
SmiMI	CAYNNNNRTG	1 cut(s)	147
SpeI	ACTAGT	1 cut(s)	430
Sse9I	AATT	7 cut(s)	44, 121, 183, 250, 274, 916, 1121
SsiI	CCGC	4 cut(s)	113, 577, 944, 1075
SspMI	CTAG	5 cut(s)	246, 354, 366, 431, 923
StyD4I	CCNGG	3 cut(s)	335, 336, 828
StyI	CCWWGG	1 cut(s)	233
TaaI	ACNGT	3 cut(s)	386, 527, 548
TaiI	ACGT	2 cut(s)	878, 1141
TaqI	TCGA	3 cut(s)	493, 1135, 1209
TasI	AATT	7 cut(s)	44, 121, 183, 250, 274, 916, 1121
TatI	WGTACW	1 cut(s)	1009
TfiI	GAWTC	4 cut(s)	332, 414, 909, 1022
Tru1I	TTAA	4 cut(s)	278, 516, 741, 1056
Tru9I	TTAA	4 cut(s)	278, 516, 741, 1056
TscAI	CASTG	5 cut(s)	103, 532, 551, 723, 1123
TseFI	GTSAC	1 cut(s)	521
TseI	GCWGC	2 cut(s)	206, 374
Tsp45I	GTSAC	1 cut(s)	521
TspDTI	ATGAA	6 cut(s)	4, 66, 333, 414, 457, 609
TspMI	CCCGGG	1 cut(s)	336
TspRI	CASTG	5 cut(s)	103, 532, 551, 723, 1123
VpaK11BI	GGWCC	1 cut(s)	237
XapI	RAATTY	2 cut(s)	274, 1121
XmaI	CCCGGG	1 cut(s)	336
XmiI	GTMKAC	1 cut(s)	1143
XspI	CTAG	5 cut(s)	246, 354, 366, 431, 923
ZrmI	AGTACT	1 cut(s)	1011

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.