Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0019935

Physical Location & Seq

Genomic Coordinates Reverse (-)

68041127 .. 68041757

Gene Structure 631 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG392400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGCCTTATGCTTATATCCACTATCCTTTCGAGAATGTGGAGCTCTTTGAGAAAAACGTGCCTGGGAACTTTGTGGCCGAAGGGCTTGATCAGACTCGTGGATGGTTCTACACTCTTATGGTGCTATCTACTGCATCATTTGGGAAACCTGCTTTTAAGAACCTCATTTGCAATGGACTTGTTCTTGCTGATGATGGGAAAAAGTTTTTAAAACTTTCCTCCAGTTATGGAGAACCATTACGATTCAAGAAGGAAGGAGTATATGGAGTTGTCAAGGATGTATTTCTGCCTTGGTACAATGCATATAGGTTCCTCGTTCAACAATCTAAAAGTCTCAATGCGCCTTTCCACCCTTTTGATCAAACTACTGTACAAAAGTCATCTAATGTGCTTGACCAGTGGATCAACTCAGCCACAGAGTCTCTTGTGCATTTTGTCTGTCAAGAGATGGATGCTTACCTGTTAGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004812 GO:0004822 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006428 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010035 GO:0010038 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0017101 GO:0019538 GO:0019752 GO:0019899 GO:0032991 GO:0034641 GO:0034645 GO:0034660 GO:0042221 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046686 GO:0050896 GO:0051020 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

Anticodon_1 tRNA-synt_1

Protein Analysis

156

Amino Acids

17.86

Weight (kDa)

6.28

Isoelectric Point (pI)

31.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA-synt_1	PF00133	1 - 80	5.1e-19	tRNA synthetases class I (I, L, M and V)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0019935)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0060201
rosa_multiflora	Rmu_sc0003366.1_g000008
rosa_samantha	Rh5AG392400 Rh5AG392500 Rh5BG404900 Rh5CG429000 Rh5DG420600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	157
AclWI	GGATC	1 cut(s)	410
AcoI	YGGCCR	1 cut(s)	75
AfaI	GTAC	2 cut(s)	296, 372
AgsI	TTSAA	2 cut(s)	247, 320
AjnI	CCWGG	1 cut(s)	61
AluBI	AGCT	1 cut(s)	43
AluI	AGCT	1 cut(s)	43
Alw21I	GWGCWC	1 cut(s)	45
Alw26I	GTCTC	2 cut(s)	338, 426
AlwI	GGATC	1 cut(s)	410
AoxI	GGCC	1 cut(s)	75
AspLEI	GCGC	1 cut(s)	343
BanII	GRGCYC	1 cut(s)	45
BauI	CACGAG	1 cut(s)	96
Bbv12I	GWGCWC	1 cut(s)	45
BccI	CCATC	3 cut(s)	96, 188, 442
BciT130I	CCWGG	1 cut(s)	63
BclI	TGATCA	2 cut(s)	88, 358
BcoDI	GTCTC	2 cut(s)	338, 426
BfuAI	ACCTGC	1 cut(s)	157
Bme1390I	CCNGG	1 cut(s)	63
BmiI	GGNNCC	1 cut(s)	311
BmrFI	CCNGG	1 cut(s)	63
BmsI	GCATC	2 cut(s)	143, 442
BpmI	CTGGAG	1 cut(s)	205
BsaJI	CCNNGG	2 cut(s)	62, 290
Bse1I	ACTGG	2 cut(s)	222, 397
Bse3DI	GCAATG	1 cut(s)	178
BseBI	CCWGG	1 cut(s)	63
BseDI	CCNNGG	2 cut(s)	62, 290
BseGI	GGATG	3 cut(s)	107, 283, 457
BseMI	GCAATG	1 cut(s)	178
BseMII	CTCAG	1 cut(s)	423
BseNI	ACTGG	2 cut(s)	222, 397
BshFI	GGCC	1 cut(s)	77
BsiHKAI	GWGCWC	1 cut(s)	45
BsmAI	GTCTC	2 cut(s)	338, 426
BsnI	GGCC	1 cut(s)	77
Bsp1286I	GDGCHC	1 cut(s)	45
Bsp1407I	TGTACA	1 cut(s)	370
Bsp143I	GATC	3 cut(s)	88, 358, 402
BspANI	GGCC	1 cut(s)	77
BspCNI	CTCAG	1 cut(s)	422
BspLI	GGNNCC	1 cut(s)	311
BspMI	ACCTGC	1 cut(s)	157
BspPI	GGATC	1 cut(s)	410
BsrDI	GCAATG	1 cut(s)	178
BsrGI	TGTACA	1 cut(s)	370
BsrI	ACTGG	2 cut(s)	222, 397
BssECI	CCNNGG	2 cut(s)	62, 290
BssMI	GATC	3 cut(s)	88, 358, 402
BssSI	CACGAG	1 cut(s)	96
BssT1I	CCWWGG	1 cut(s)	290
Bst2BI	CACGAG	1 cut(s)	96
Bst2UI	CCWGG	1 cut(s)	63
Bst4CI	ACNGT	1 cut(s)	370
BstAUI	TGTACA	1 cut(s)	370
BstDEI	CTNAG	1 cut(s)	409
BstF5I	GGATG	3 cut(s)	107, 283, 457
BstHHI	GCGC	1 cut(s)	343
BstKTI	GATC	3 cut(s)	91, 361, 405
BstMAI	GTCTC	2 cut(s)	338, 426
BstMBI	GATC	3 cut(s)	88, 358, 402
BstNI	CCWGG	1 cut(s)	63
BstSCI	CCNGG	1 cut(s)	61
BsuRI	GGCC	1 cut(s)	77
BtsCI	GGATG	3 cut(s)	107, 283, 457
BtsIMutI	CAGTG	1 cut(s)	404
BveI	ACCTGC	1 cut(s)	157
CfoI	GCGC	1 cut(s)	343
Csp6I	GTAC	2 cut(s)	295, 371
CviJI	RGCY	4 cut(s)	43, 77, 85, 413
CviKI_1	RGCY	4 cut(s)	43, 77, 85, 413
CviQI	GTAC	2 cut(s)	295, 371
DdeI	CTNAG	1 cut(s)	409
DpnI	GATC	3 cut(s)	90, 360, 404
DpnII	GATC	3 cut(s)	88, 358, 402
DraI	TTTAAA	1 cut(s)	210
EaeI	YGGCCR	1 cut(s)	75
Ecl136II	GAGCTC	1 cut(s)	43
Eco130I	CCWWGG	1 cut(s)	290
Eco24I	GRGCYC	1 cut(s)	45
Eco53kI	GAGCTC	1 cut(s)	43
EcoICRI	GAGCTC	1 cut(s)	43
EcoRII	CCWGG	1 cut(s)	61
EcoT14I	CCWWGG	1 cut(s)	290
EcoT22I	ATGCAT	1 cut(s)	304
EcoT38I	GRGCYC	1 cut(s)	45
ErhI	CCWWGG	1 cut(s)	290
FaiI	YATR	8 cut(s)	9, 15, 119, 228, 262, 264, 304, 306
FbaI	TGATCA	2 cut(s)	88, 358
FokI	GGATG	3 cut(s)	114, 290, 464
FriOI	GRGCYC	1 cut(s)	45
GlaI	GCGC	1 cut(s)	342
GsuI	CTGGAG	1 cut(s)	205
HaeIII	GGCC	1 cut(s)	77
HhaI	GCGC	1 cut(s)	343
Hin6I	GCGC	1 cut(s)	341
HinP1I	GCGC	1 cut(s)	341
HinfI	GANTC	3 cut(s)	94, 243, 419
Hpy188I	TCNGA	1 cut(s)	93
Hpy188III	TCNNGA	3 cut(s)	31, 247, 443
HpyAV	CCTTC	3 cut(s)	74, 244, 248
HpyCH4III	ACNGT	1 cut(s)	370
HpyCH4IV	ACGT	1 cut(s)	57
HpyCH4V	TGCA	4 cut(s)	134, 171, 302, 430
HpyF3I	CTNAG	1 cut(s)	409
HpySE526I	ACGT	1 cut(s)	57
HspAI	GCGC	1 cut(s)	341
Ksp22I	TGATCA	2 cut(s)	88, 358
Kzo9I	GATC	3 cut(s)	88, 358, 402
LmnI	GCTCC	1 cut(s)	40
LpnPI	CCDG	5 cut(s)	48, 75, 162, 235, 410
LweI	GCATC	2 cut(s)	143, 442
MaeII	ACGT	1 cut(s)	57
MalI	GATC	3 cut(s)	90, 360, 404
MboI	GATC	3 cut(s)	88, 358, 402
MhlI	GDGCHC	1 cut(s)	45
MlyI	GAGTC	2 cut(s)	88, 428
MnlI	CCTC	3 cut(s)	173, 229, 323
Mph1103I	ATGCAT	1 cut(s)	304
MseI	TTAA	2 cut(s)	156, 209
MslI	CAYNNNNRTG	1 cut(s)	116
MspR9I	CCNGG	1 cut(s)	63
MvaI	CCWGG	1 cut(s)	63
NdeII	GATC	3 cut(s)	88, 358, 402
NlaIV	GGNNCC	1 cut(s)	311
NsiI	ATGCAT	1 cut(s)	304
PfeI	GAWTC	1 cut(s)	243
PleI	GAGTC	2 cut(s)	88, 427
PpsI	GAGTC	2 cut(s)	88, 427
Psp124BI	GAGCTC	1 cut(s)	45
Psp6I	CCWGG	1 cut(s)	61
PspGI	CCWGG	1 cut(s)	61
PspN4I	GGNNCC	1 cut(s)	311
RsaI	GTAC	2 cut(s)	296, 372
RsaNI	GTAC	2 cut(s)	295, 371
RseI	CAYNNNNRTG	1 cut(s)	116
SacI	GAGCTC	1 cut(s)	45
SaqAI	TTAA	2 cut(s)	156, 209
Sau3AI	GATC	3 cut(s)	88, 358, 402
SchI	GAGTC	2 cut(s)	88, 428
ScrFI	CCNGG	1 cut(s)	63
SduI	GDGCHC	1 cut(s)	45
SetI	ASST	6 cut(s)	45, 60, 151, 165, 311, 462
SfaNI	GCATC	2 cut(s)	143, 442
SmiMI	CAYNNNNRTG	1 cut(s)	116
SstI	GAGCTC	1 cut(s)	45
StyD4I	CCNGG	1 cut(s)	61
StyI	CCWWGG	1 cut(s)	290
TaaI	ACNGT	1 cut(s)	370
TaiI	ACGT	1 cut(s)	60
TaqI	TCGA	1 cut(s)	30
TatI	WGTACW	1 cut(s)	370
TfiI	GAWTC	1 cut(s)	243
Tru1I	TTAA	2 cut(s)	156, 209
Tru9I	TTAA	2 cut(s)	156, 209
TscAI	CASTG	1 cut(s)	404
TspRI	CASTG	1 cut(s)	404
Zsp2I	ATGCAT	1 cut(s)	304

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.