Rmu_sc0003439.1_g000013

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003439.1
OG0019468
Physical Location & Seq
Reverse (-)
58455 .. 63266
4812 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003439.1_g000013.1.cds

Sequence Viewer

Length: 1116 bp
atgtctgcagatcacctgctgcaaatccctctcttacttgctacctttatcggcgaggcccaagcaaccggcgatcccaccggctccgattgccgcaacgaggaccggtcgctgtcgtcttccgtctccgattctctcggcgtgttgaaagtgatgaccgccgctcactttcctcctccagctcatcggtcaccggatttcagttaccggttcccggaatccggtaattggtcgcgggaatccggtcacctttcaccggagtccggtcaccggtcgccggagtctggtcgccggagatcgcgccggtcactggccctccgaccaccagattcagctgcagcatcttcacgaaatcaatcttcgtcgacggtaacgaggacgagtggattgaacaaggaggtgatggttttgggtctcagtcattggcgtcgagagcggggtggtgacttcggtctcggagtctgggcagagggtagcctgaagaagaagtcggtggtctgggatgttggagggcgctggccggggcgacggaggaggaggcagccaatgaggggtgccgctggtctgggatgtaccctctctctctccttcgaattggatggaatcaatctgggcttcatatatataagtggtggcgttttggaatcaatattctgggctctctacaagaacacacctcttcctagtcctcccctaccatcaactcccaaagccagaagtgccatcttcatcttccatcatatcttcttcattatcatcatgaagcaaaaggtggtgatcaggctctctgtgcacgacgagaagtcccgatccaaggcaatgaagacagcagttggagttgatggggtggattcagcaagtctgccactggacaaggaccaaattgaagtaacaggaaatgatgttgatgtggttttgctcacaagacttctcagaaaaagcgtcaagcgtgctgacgtcgtcagtgtgagccctgtcaaagaggaggagaagaagaaggaggagaagaaggaggagcctaaatttgagcaaatcatcgtcggatggcctcagacttacccagttgatccataccagtggtatgatcagccaagccccggttgctccattatgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

371

Amino Acids

41.03

Weight (kDa)

9.57

Isoelectric Point (pI)

66.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019468)

Species Orthologous Gene IDs
rosa_laevigata RLG00000012759
rosa_multiflora Rmu_sc0003439.1_g000013
rosa_samantha Rh2AG129300 Rh2CG133100 Rh3CG273400 Rh4BG449800 Rh4DG170000 Rh6CG085000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 24
AatII GACGTC 1 cut(s) 960
Acc36I ACCTGC 1 cut(s) 24
AccB1I GGYRCC 1 cut(s) 554
AccBSI CCGCTC 2 cut(s) 164, 436
AccI GTMKAC 1 cut(s) 365
AccII CGCG 2 cut(s) 235, 301
AciI CCGC 6 cut(s) 94, 159, 162, 235, 436, 558
AclWI GGATC 3 cut(s) 68, 804, 1061
AcoI YGGCCR 1 cut(s) 518
AcsI RAATTY 1 cut(s) 1022
AcuI CTGAAG 1 cut(s) 500
AcyI GRCGYC 2 cut(s) 427, 957
AfaI GTAC 1 cut(s) 574
AgeI ACCGGT 3 cut(s) 105, 207, 270
AgsI TTSAA 3 cut(s) 148, 391, 887
AhdI GACNNNNNGTC 1 cut(s) 802
AluBI AGCT 2 cut(s) 182, 335
AluI AGCT 2 cut(s) 182, 335
Alw21I GWGCWC 1 cut(s) 795
Alw26I GTCTC 3 cut(s) 130, 419, 458
Alw44I GTGCAC 1 cut(s) 791
AlwI GGATC 3 cut(s) 68, 804, 1061
AoxI GGCC 4 cut(s) 57, 312, 518, 1046
ApaLI GTGCAC 1 cut(s) 791
ApeKI GCWGC 4 cut(s) 19, 335, 338, 541
ApoI RAATTY 1 cut(s) 1022
AsiGI ACCGGT 3 cut(s) 105, 207, 270
AspLEI GCGC 2 cut(s) 303, 516
AspS9I GGNCC 4 cut(s) 58, 103, 313, 877
AsuC2I CCSGG 3 cut(s) 215, 522, 1098
AsuHPI GGTGA 8 cut(s) 5, 183, 239, 246, 260, 412, 455, 787
AsuII TTCGAA 1 cut(s) 591
AvaII GGWCC 2 cut(s) 103, 877
BaeGI GKGCMC 1 cut(s) 795
BanI GGYRCC 1 cut(s) 554
BanII GRGCYC 2 cut(s) 661, 974
BbsI GAAGAC 2 cut(s) 111, 830
Bbv12I GWGCWC 1 cut(s) 795
BbvI GCAGC 4 cut(s) 6, 322, 350, 553
BccI CCATC 7 cut(s) 397, 593, 706, 731, 744, 836, 1038
BclI TGATCA 2 cut(s) 777, 1084
BcnI CCSGG 3 cut(s) 215, 522, 1098
BcoDI GTCTC 3 cut(s) 130, 419, 458
BfaI CTAG 1 cut(s) 684
BfmI CTRYAG 2 cut(s) 6, 336
BfoI RGCGCY 1 cut(s) 517
BfuAI ACCTGC 1 cut(s) 24
BisI GCNGC 7 cut(s) 20, 94, 162, 336, 339, 542, 558
BlsI GCNGC 7 cut(s) 21, 95, 163, 337, 340, 543, 559
Bme1390I CCNGG 3 cut(s) 215, 522, 1098
Bme18I GGWCC 2 cut(s) 103, 877
BmeRI GACNNNNNGTC 1 cut(s) 802
BmgT120I GGNCC 4 cut(s) 58, 103, 313, 877
BmiI GGNNCC 4 cut(s) 85, 212, 556, 1017
BmrFI CCNGG 3 cut(s) 215, 522, 1098
BmrI ACTGGG 1 cut(s) 1055
BmsI GCATC 1 cut(s) 350
BmuI ACTGGG 1 cut(s) 1055
BoxI GACNNNNGTC 1 cut(s) 450
BpiI GAAGAC 2 cut(s) 111, 830
BpmI CTGGAG 1 cut(s) 162
Bpu14I TTCGAA 1 cut(s) 591
BpuMI CCSGG 3 cut(s) 215, 522, 1098
BsaHI GRCGYC 2 cut(s) 427, 957
BsaI GGTCTC 2 cut(s) 419, 458
BsaJI CCNNGG 3 cut(s) 521, 813, 1096
BsaWI WCCGGW 8 cut(s) 105, 193, 207, 221, 242, 256, 263, 270
BsaXI ACNNNNNCTCC 2 cut(s) 300, 330
Bse118I RCCGGY 6 cut(s) 68, 80, 105, 207, 270, 303
Bse1I ACTGG 4 cut(s) 315, 873, 1061, 1075
Bse3DI GCAATG 1 cut(s) 825
BseDI CCNNGG 3 cut(s) 521, 813, 1096
BseGI GGATG 4 cut(s) 508, 575, 604, 1049
BseMI GCAATG 1 cut(s) 825
BseMII CTCAG 3 cut(s) 430, 946, 1064
BseNI ACTGG 4 cut(s) 315, 873, 1061, 1075
BseRI GAGGAG 7 cut(s) 165, 547, 550, 998, 1001, 1016, 1028
BseSI GKGCMC 1 cut(s) 795
BseXI GCAGC 4 cut(s) 6, 322, 350, 553
Bsh1236I CGCG 2 cut(s) 235, 301
Bsh1285I CGRYCG 2 cut(s) 110, 275
BshFI GGCC 4 cut(s) 59, 314, 520, 1048
BshNI GGYRCC 1 cut(s) 554
BshTI ACCGGT 3 cut(s) 105, 207, 270
BsiEI CGRYCG 2 cut(s) 110, 275
BsiHKAI GWGCWC 1 cut(s) 795
BslFI GGGAC 1 cut(s) 790
BsmAI GTCTC 3 cut(s) 130, 419, 458
BsmBI CGTCTC 1 cut(s) 130
BsmFI GGGAC 1 cut(s) 790
BsnI GGCC 4 cut(s) 59, 314, 520, 1048
Bso31I GGTCTC 2 cut(s) 419, 458
Bsp119I TTCGAA 1 cut(s) 591
Bsp1286I GDGCHC 3 cut(s) 661, 795, 974
Bsp143I GATC 7 cut(s) 10, 73, 296, 777, 809, 1066, 1084
BspACI CCGC 6 cut(s) 94, 159, 162, 235, 436, 558
BspANI GGCC 4 cut(s) 59, 314, 520, 1048
BspCNI CTCAG 3 cut(s) 429, 945, 1063
BspFNI CGCG 2 cut(s) 235, 301
BspHI TCATGA 1 cut(s) 759
BspLI GGNNCC 4 cut(s) 85, 212, 556, 1017
BspMAI CTGCAG 2 cut(s) 10, 340
BspMI ACCTGC 1 cut(s) 24
BspPI GGATC 3 cut(s) 68, 804, 1061
BspT104I TTCGAA 1 cut(s) 591
BspT107I GGYRCC 1 cut(s) 554
BspTNI GGTCTC 2 cut(s) 419, 458
BsrBI CCGCTC 2 cut(s) 164, 436
BsrDI GCAATG 1 cut(s) 825
BsrFI RCCGGY 6 cut(s) 68, 80, 105, 207, 270, 303
BsrI ACTGG 4 cut(s) 315, 873, 1061, 1075
BssAI RCCGGY 6 cut(s) 68, 80, 105, 207, 270, 303
BssECI CCNNGG 3 cut(s) 521, 813, 1096
BssMI GATC 7 cut(s) 10, 73, 296, 777, 809, 1066, 1084
BssNI GRCGYC 2 cut(s) 427, 957
BssT1I CCWWGG 1 cut(s) 813
Bst4CI ACNGT 1 cut(s) 370
Bst6I CTCTTC 1 cut(s) 684
BstACI GRCGYC 2 cut(s) 427, 957
BstBI TTCGAA 1 cut(s) 591
BstC8I GCNNGC 2 cut(s) 518, 951
BstDEI CTNAG 3 cut(s) 416, 932, 1050
BstEII GGTNACC 3 cut(s) 189, 245, 266
BstF5I GGATG 4 cut(s) 508, 575, 604, 1049
BstFNI CGCG 2 cut(s) 235, 301
BstH2I RGCGCY 1 cut(s) 517
BstHHI GCGC 2 cut(s) 303, 516
BstKTI GATC 7 cut(s) 13, 76, 299, 780, 812, 1069, 1087
BstMAI GTCTC 3 cut(s) 130, 419, 458
BstMBI GATC 7 cut(s) 10, 73, 296, 777, 809, 1066, 1084
BstMCI CGRYCG 2 cut(s) 110, 275
BstMWI GCNNNNNNNGC 5 cut(s) 90, 433, 719, 790, 1101
BstPAI GACNNNNGTC 1 cut(s) 450
BstPI GGTNACC 3 cut(s) 189, 245, 266
BstSCI CCNGG 3 cut(s) 213, 520, 1096
BstSFI CTRYAG 2 cut(s) 6, 336
BstSLI GKGCMC 1 cut(s) 795
BstUI CGCG 2 cut(s) 235, 301
BstV1I GCAGC 4 cut(s) 6, 322, 350, 553
BstV2I GAAGAC 2 cut(s) 111, 830
BstXI CCANNNNNNTGG 1 cut(s) 1077
BsuRI GGCC 4 cut(s) 59, 314, 520, 1048
BtsCI GGATG 4 cut(s) 508, 575, 604, 1049
BtsIMutI CAGTG 4 cut(s) 308, 866, 970, 1082
BveI ACCTGC 1 cut(s) 24
Cac8I GCNNGC 2 cut(s) 518, 951
CciI TCATGA 1 cut(s) 759
CfoI GCGC 2 cut(s) 303, 516
Cfr10I RCCGGY 6 cut(s) 68, 80, 105, 207, 270, 303
Cfr13I GGNCC 4 cut(s) 58, 103, 313, 877
CseI GACGC 2 cut(s) 416, 931
Csp6I GTAC 1 cut(s) 573
CspAI ACCGGT 3 cut(s) 105, 207, 270
CviAII CATG 1 cut(s) 760
CviQI GTAC 1 cut(s) 573
DdeI CTNAG 3 cut(s) 416, 932, 1050
DpnI GATC 7 cut(s) 12, 75, 298, 779, 811, 1068, 1086
DpnII GATC 7 cut(s) 10, 73, 296, 777, 809, 1066, 1084
DriI GACNNNNNGTC 1 cut(s) 802
EaeI YGGCCR 1 cut(s) 518
Eam1104I CTCTTC 1 cut(s) 684
Eam1105I GACNNNNNGTC 1 cut(s) 802
EarI CTCTTC 1 cut(s) 684
Eco130I CCWWGG 1 cut(s) 813
Eco24I GRGCYC 2 cut(s) 661, 974
Eco31I GGTCTC 2 cut(s) 419, 458
Eco47I GGWCC 2 cut(s) 103, 877
Eco57I CTGAAG 1 cut(s) 500
Eco91I GGTNACC 3 cut(s) 189, 245, 266
EcoO65I GGTNACC 3 cut(s) 189, 245, 266
EcoT14I CCWWGG 1 cut(s) 813
EcoT38I GRGCYC 2 cut(s) 661, 974
ErhI CCWWGG 1 cut(s) 813
Esp3I CGTCTC 1 cut(s) 130
FaeI CATG 1 cut(s) 763
FaiI YATR 9 cut(s) 620, 622, 624, 626, 741, 761, 1072, 1083, 1112
FaqI GGGAC 1 cut(s) 790
FatI CATG 1 cut(s) 759
FauI CCCGC 2 cut(s) 228, 429
FbaI TGATCA 2 cut(s) 777, 1084
FblI GTMKAC 1 cut(s) 365
Fnu4HI GCNGC 7 cut(s) 20, 94, 162, 336, 339, 542, 558
FokI GGATG 4 cut(s) 515, 582, 611, 1056
FriOI GRGCYC 2 cut(s) 661, 974
Fsp4HI GCNGC 7 cut(s) 20, 94, 162, 336, 339, 542, 558
FspBI CTAG 1 cut(s) 684
GlaI GCGC 2 cut(s) 302, 515
GluI GCNGC 7 cut(s) 20, 94, 162, 336, 339, 542, 558
GsuI CTGGAG 1 cut(s) 162
HaeII RGCGCY 1 cut(s) 517
HaeIII GGCC 4 cut(s) 59, 314, 520, 1048
HgaI GACGC 2 cut(s) 416, 931
HhaI GCGC 2 cut(s) 303, 516
Hin1I GRCGYC 2 cut(s) 427, 957
Hin1II CATG 1 cut(s) 763
Hin6I GCGC 2 cut(s) 301, 514
HinP1I GCGC 2 cut(s) 301, 514
HincII GTYRAC 1 cut(s) 366
HindII GTYRAC 1 cut(s) 366
HphI GGTGA 8 cut(s) 5, 183, 239, 246, 260, 412, 455, 787
Hpy166II GTNNAC 2 cut(s) 366, 793
Hpy188I TCNGA 7 cut(s) 88, 130, 320, 458, 935, 1043, 1053
Hpy188III TCNNGA 4 cut(s) 348, 431, 760, 807
Hpy8I GTNNAC 2 cut(s) 366, 793
Hpy99I CGWCG 7 cut(s) 367, 370, 432, 531, 800, 962, 1043
HpyAV CCTTC 3 cut(s) 598, 991, 1003
HpyCH4III ACNGT 1 cut(s) 370
HpyCH4IV ACGT 1 cut(s) 957
HpyCH4V TGCA 4 cut(s) 8, 22, 338, 793
HpyF10VI GCNNNNNNNGC 5 cut(s) 90, 433, 719, 790, 1101
HpyF3I CTNAG 3 cut(s) 416, 932, 1050
HpySE526I ACGT 1 cut(s) 957
Hsp92I GRCGYC 2 cut(s) 427, 957
Hsp92II CATG 1 cut(s) 763
HspAI GCGC 2 cut(s) 301, 514
Ksp22I TGATCA 2 cut(s) 777, 1084
Kzo9I GATC 7 cut(s) 10, 73, 296, 777, 809, 1066, 1084
LmnI GCTCC 3 cut(s) 89, 1015, 1109
Lsp1109I GCAGC 4 cut(s) 6, 322, 350, 553
LweI GCATC 1 cut(s) 350
MaeI CTAG 1 cut(s) 684
MaeII ACGT 1 cut(s) 957
MaeIII GTNAC 8 cut(s) 189, 203, 245, 266, 306, 370, 443, 889
MalI GATC 7 cut(s) 12, 75, 298, 779, 811, 1068, 1086
MbiI CCGCTC 2 cut(s) 164, 436
MboI GATC 7 cut(s) 10, 73, 296, 777, 809, 1066, 1084
MhlI GDGCHC 3 cut(s) 661, 795, 974
MluCI AATT 4 cut(s) 226, 593, 882, 1022
MlyI GAGTC 3 cut(s) 269, 290, 468
MmeI TCCRAC 4 cut(s) 343, 487, 814, 1021
MslI CAYNNNNRTG 1 cut(s) 1075
MspA1I CMGCKG 2 cut(s) 335, 560
MspR9I CCNGG 3 cut(s) 215, 522, 1098
MvnI CGCG 2 cut(s) 235, 301
MwoI GCNNNNNNNGC 5 cut(s) 90, 433, 719, 790, 1101
NciI CCSGG 3 cut(s) 215, 522, 1098
NdeII GATC 7 cut(s) 10, 73, 296, 777, 809, 1066, 1084
NlaIII CATG 1 cut(s) 763
NlaIV GGNNCC 4 cut(s) 85, 212, 556, 1017
NmeAIII GCCGAG 1 cut(s) 117
NmuCI GTSAC 5 cut(s) 189, 245, 266, 306, 443
NspV TTCGAA 1 cut(s) 591
PagI TCATGA 1 cut(s) 759
PaqCI CACCTGC 1 cut(s) 24
PcsI WCGNNNNNNNCGW 1 cut(s) 371
PfeI GAWTC 7 cut(s) 131, 218, 239, 329, 603, 644, 851
PflFI GACNNNGTC 1 cut(s) 959
PfoI TCCNGGA 1 cut(s) 213
PinAI ACCGGT 3 cut(s) 105, 207, 270
PkrI GCNGC 7 cut(s) 21, 95, 163, 337, 340, 543, 559
PleI GAGTC 3 cut(s) 268, 289, 467
PpsI GAGTC 3 cut(s) 268, 289, 467
PshAI GACNNNNGTC 1 cut(s) 450
PspEI GGTNACC 3 cut(s) 189, 245, 266
PspN4I GGNNCC 4 cut(s) 85, 212, 556, 1017
PspPI GGNCC 4 cut(s) 58, 103, 313, 877
PstI CTGCAG 2 cut(s) 10, 340
PsyI GACNNNGTC 1 cut(s) 959
PvuII CAGCTG 1 cut(s) 335
RsaI GTAC 1 cut(s) 574
RsaNI GTAC 1 cut(s) 573
RseI CAYNNNNRTG 1 cut(s) 1075
SalI GTCGAC 1 cut(s) 364
SatI GCNGC 7 cut(s) 20, 94, 162, 336, 339, 542, 558
Sau3AI GATC 7 cut(s) 10, 73, 296, 777, 809, 1066, 1084
Sau96I GGNCC 4 cut(s) 58, 103, 313, 877
SchI GAGTC 3 cut(s) 269, 290, 468
ScrFI CCNGG 3 cut(s) 215, 522, 1098
SduI GDGCHC 3 cut(s) 661, 795, 974
SetI ASST 9 cut(s) 18, 47, 184, 252, 337, 402, 679, 774, 960
SfaNI GCATC 1 cut(s) 350
SfcI CTRYAG 2 cut(s) 6, 336
SfuI TTCGAA 1 cut(s) 591
SgrDI CGTCGACG 1 cut(s) 364
SinI GGWCC 2 cut(s) 103, 877
SmiMI CAYNNNNRTG 1 cut(s) 1075
Sse9I AATT 4 cut(s) 226, 593, 882, 1022
SsiI CCGC 6 cut(s) 94, 159, 162, 235, 436, 558
SspI AATATT 1 cut(s) 651
SspMI CTAG 1 cut(s) 684
StyD4I CCNGG 3 cut(s) 213, 520, 1096
StyI CCWWGG 1 cut(s) 813
TaaI ACNGT 1 cut(s) 370
TaiI ACGT 1 cut(s) 960
TaqI TCGA 3 cut(s) 365, 430, 591
TaqII GACCGA 2 cut(s) 177, 440
TasI AATT 4 cut(s) 226, 593, 882, 1022
TauI GCSGC 3 cut(s) 96, 164, 560
TfiI GAWTC 7 cut(s) 131, 218, 239, 329, 603, 644, 851
TscAI CASTG 4 cut(s) 315, 873, 970, 1082
TseFI GTSAC 5 cut(s) 189, 245, 266, 306, 443
TseI GCWGC 4 cut(s) 19, 335, 338, 541
Tsp45I GTSAC 5 cut(s) 189, 245, 266, 306, 443
TspDTI ATGAA 5 cut(s) 607, 718, 739, 776, 836
TspGWI ACGGA 2 cut(s) 112, 544
TspRI CASTG 4 cut(s) 315, 873, 970, 1082
Tth111I GACNNNGTC 1 cut(s) 959
VneI GTGCAC 1 cut(s) 791
VpaK11BI GGWCC 2 cut(s) 103, 877
XapI RAATTY 1 cut(s) 1022
XmiI GTMKAC 1 cut(s) 365
XspI CTAG 1 cut(s) 684
ZraI GACGTC 1 cut(s) 958
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.