Rh4BG449800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0019468
Physical Location & Seq
Reverse (-)
58763296 .. 58764586
1291 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG449800.1

Sequence Viewer

Length: 645 bp
ATGCATTTGTCAAGTACCTCATCATTTAATGGGGTGATCCATATCTCTTCCACAAAGAAGAGAGGACGCCCGAAAGGTAGTAAGAACAAATATAAGACAAAGAGTCCCAAGCCTCTCAAGACAAGGTTCCCTAAAGGGGAAGTGGAGTCCAAGGCGCTGGCCTTGGTGGAGAAAGCAGATGCATCTGCAGCAATATCTAAGGCTATTGGTGAGTTTGAGGAAGCTTTTGCCAAAGCTATGGAAGAGAACTACCGGAGCTACGAGACCATGAACACATTTATAGGCTGCCCAATGCAGCTCACACATTTTCGCCCCTCCGGCATTGATCCCATAGCTTTAAGCAAACAGTTGCTACAGTACTTTGAGTCACACACCAAGCACCACTCCCTCTCCTTCAATCTGTTCCCTTTTCCACACCTGCTGCAAATCCCTCTCTTACTCGTTACCTTCAGCGGCGAGGCCCAAGCAACCGGCGATCCCACCGGCTCCGATTGCGGCGACGAGGACCGGTCGCCGTCGTCTTCCGTCTCCGATTCTCTCGGCGTGTTGAAAGTCACGACCGCCGCTCTCTTTCCTCCTCCTCCGGCGTCGTCCTCGACCGGTTCGGCTCCGAGTTCGAGTCCTGAGCTGAAAATTCAGAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

214

Amino Acids

23.04

Weight (kDa)

9.0

Isoelectric Point (pI)

53.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019468)

Species Orthologous Gene IDs
rosa_laevigata RLG00000012759
rosa_multiflora Rmu_sc0003439.1_g000013
rosa_samantha Rh2AG129300 Rh2CG133100 Rh3CG273400 Rh4BG449800 Rh4DG170000 Rh6CG085000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 426
Acc36I ACCTGC 1 cut(s) 426
AccBSI CCGCTC 1 cut(s) 566
AciI CCGC 4 cut(s) 453, 495, 561, 564
AclWI GGATC 3 cut(s) 31, 320, 470
AcsI RAATTY 1 cut(s) 633
AcuI CTGAAG 1 cut(s) 433
AcyI GRCGYC 2 cut(s) 67, 587
AfaI GTAC 2 cut(s) 16, 359
AfiI CCNNNNNNNGG 1 cut(s) 136
AgeI ACCGGT 2 cut(s) 507, 599
AgsI TTSAA 2 cut(s) 397, 550
AhdI GACNNNNNGTC 1 cut(s) 102
AluBI AGCT 7 cut(s) 224, 236, 258, 298, 335, 628, 642
AluI AGCT 7 cut(s) 224, 236, 258, 298, 335, 628, 642
Alw26I GTCTC 2 cut(s) 257, 532
AlwI GGATC 3 cut(s) 31, 320, 470
AoxI GGCC 2 cut(s) 159, 459
ApeKI GCWGC 4 cut(s) 188, 285, 295, 421
ApoI RAATTY 1 cut(s) 633
AsiGI ACCGGT 2 cut(s) 507, 599
AspLEI GCGC 1 cut(s) 157
AspS9I GGNCC 2 cut(s) 460, 505
AsuHPI GGTGA 2 cut(s) 46, 221
AvaII GGWCC 1 cut(s) 505
BbsI GAAGAC 1 cut(s) 513
BbvI GCAGC 4 cut(s) 200, 272, 307, 408
BceAI ACGGC 1 cut(s) 499
BcoDI GTCTC 2 cut(s) 257, 532
BfmI CTRYAG 2 cut(s) 186, 353
BfoI RGCGCY 1 cut(s) 158
BfuAI ACCTGC 1 cut(s) 426
BglI GCCNNNNNGGC 1 cut(s) 318
BisI GCNGC 7 cut(s) 189, 286, 296, 422, 454, 496, 564
BlsI GCNGC 7 cut(s) 190, 287, 297, 423, 455, 497, 565
BmcAI AGTACT 1 cut(s) 359
Bme18I GGWCC 1 cut(s) 505
BmeRI GACNNNNNGTC 1 cut(s) 102
BmgT120I GGNCC 2 cut(s) 460, 505
BmiI GGNNCC 3 cut(s) 128, 487, 609
BmsI GCATC 2 cut(s) 169, 191
BpiI GAAGAC 1 cut(s) 513
Bpu10I CCTNAGC 1 cut(s) 624
BpuEI CTTGAG 1 cut(s) 101
BsaBI GATNNNNATC 1 cut(s) 41
BsaHI GRCGYC 2 cut(s) 67, 587
BsaI GGTCTC 1 cut(s) 257
BsaJI CCNNGG 2 cut(s) 150, 162
BsaWI WCCGGW 3 cut(s) 252, 507, 599
BsaXI ACNNNNNCTCC 2 cut(s) 374, 404
Bsc4I CCNNNNNNNGG 1 cut(s) 136
Bse118I RCCGGY 4 cut(s) 470, 482, 507, 599
Bse8I GATNNNNATC 1 cut(s) 41
BseDI CCNNGG 2 cut(s) 150, 162
BseJI GATNNNNATC 1 cut(s) 41
BseLI CCNNNNNNNGG 1 cut(s) 136
BseMII CTCAG 1 cut(s) 615
BseRI GAGGAG 2 cut(s) 567, 570
BseXI GCAGC 4 cut(s) 200, 272, 307, 408
Bsh1285I CGRYCG 3 cut(s) 512, 561, 600
BshFI GGCC 2 cut(s) 161, 461
BshTI ACCGGT 2 cut(s) 507, 599
BsiEI CGRYCG 3 cut(s) 512, 561, 600
BsiSI CCGG 7 cut(s) 253, 318, 471, 483, 508, 584, 600
BslFI GGGAC 1 cut(s) 90
BslI CCNNNNNNNGG 1 cut(s) 136
BsmAI GTCTC 2 cut(s) 257, 532
BsmBI CGTCTC 1 cut(s) 532
BsmFI GGGAC 1 cut(s) 90
BsnI GGCC 2 cut(s) 161, 461
Bso31I GGTCTC 1 cut(s) 257
Bsp143I GATC 3 cut(s) 36, 325, 475
BspACI CCGC 4 cut(s) 453, 495, 561, 564
BspANI GGCC 2 cut(s) 161, 461
BspCNI CTCAG 1 cut(s) 616
BspLI GGNNCC 3 cut(s) 128, 487, 609
BspMAI CTGCAG 1 cut(s) 190
BspMI ACCTGC 1 cut(s) 426
BspPI GGATC 3 cut(s) 31, 320, 470
BspTNI GGTCTC 1 cut(s) 257
BsrBI CCGCTC 1 cut(s) 566
BsrFI RCCGGY 4 cut(s) 470, 482, 507, 599
BssAI RCCGGY 4 cut(s) 470, 482, 507, 599
BssECI CCNNGG 2 cut(s) 150, 162
BssMI GATC 3 cut(s) 36, 325, 475
BssNI GRCGYC 2 cut(s) 67, 587
BssT1I CCWWGG 2 cut(s) 150, 162
Bst4CI ACNGT 2 cut(s) 348, 357
Bst6I CTCTTC 3 cut(s) 52, 53, 237
BstACI GRCGYC 2 cut(s) 67, 587
BstC8I GCNNGC 1 cut(s) 159
BstDEI CTNAG 2 cut(s) 198, 624
BstH2I RGCGCY 1 cut(s) 158
BstHHI GCGC 1 cut(s) 157
BstKTI GATC 3 cut(s) 39, 328, 478
BstMAI GTCTC 2 cut(s) 257, 532
BstMBI GATC 3 cut(s) 36, 325, 475
BstMCI CGRYCG 3 cut(s) 512, 561, 600
BstMWI GCNNNNNNNGC 3 cut(s) 188, 318, 492
BstSFI CTRYAG 2 cut(s) 186, 353
BstV1I GCAGC 4 cut(s) 200, 272, 307, 408
BstV2I GAAGAC 1 cut(s) 513
BstXI CCANNNNNNTGG 2 cut(s) 157, 238
BsuRI GGCC 2 cut(s) 161, 461
BveI ACCTGC 1 cut(s) 426
Cac8I GCNNGC 1 cut(s) 159
CfoI GCGC 1 cut(s) 157
Cfr10I RCCGGY 4 cut(s) 470, 482, 507, 599
Cfr13I GGNCC 2 cut(s) 460, 505
CseI GACGC 2 cut(s) 75, 576
Csp6I GTAC 2 cut(s) 15, 358
CspAI ACCGGT 2 cut(s) 507, 599
CviAII CATG 1 cut(s) 268
CviQI GTAC 2 cut(s) 15, 358
DdeI CTNAG 2 cut(s) 198, 624
DpnI GATC 3 cut(s) 38, 327, 477
DpnII GATC 3 cut(s) 36, 325, 475
DriI GACNNNNNGTC 1 cut(s) 102
Eam1104I CTCTTC 3 cut(s) 52, 53, 237
Eam1105I GACNNNNNGTC 1 cut(s) 102
EarI CTCTTC 3 cut(s) 52, 53, 237
Eco130I CCWWGG 2 cut(s) 150, 162
Eco31I GGTCTC 1 cut(s) 257
Eco47I GGWCC 1 cut(s) 505
Eco57I CTGAAG 1 cut(s) 433
EcoT14I CCWWGG 2 cut(s) 150, 162
EcoT22I ATGCAT 2 cut(s) 6, 184
ErhI CCWWGG 2 cut(s) 150, 162
Esp3I CGTCTC 1 cut(s) 532
FaeI CATG 1 cut(s) 271
FaiI YATR 6 cut(s) 42, 93, 239, 269, 281, 332
FaqI GGGAC 1 cut(s) 90
FatI CATG 1 cut(s) 267
Fnu4HI GCNGC 7 cut(s) 189, 286, 296, 422, 454, 496, 564
Fsp4HI GCNGC 7 cut(s) 189, 286, 296, 422, 454, 496, 564
GlaI GCGC 1 cut(s) 156
GluI GCNGC 7 cut(s) 189, 286, 296, 422, 454, 496, 564
HaeII RGCGCY 1 cut(s) 158
HaeIII GGCC 2 cut(s) 161, 461
HapII CCGG 7 cut(s) 253, 318, 471, 483, 508, 584, 600
HgaI GACGC 2 cut(s) 75, 576
HhaI GCGC 1 cut(s) 157
Hin1I GRCGYC 2 cut(s) 67, 587
Hin1II CATG 1 cut(s) 271
Hin6I GCGC 1 cut(s) 155
HinP1I GCGC 1 cut(s) 155
HindIII AAGCTT 1 cut(s) 222
HinfI GANTC 5 cut(s) 103, 146, 365, 533, 619
HpaII CCGG 7 cut(s) 253, 318, 471, 483, 508, 584, 600
HphI GGTGA 2 cut(s) 46, 221
Hpy188I TCNGA 4 cut(s) 490, 532, 612, 639
Hpy188III TCNNGA 3 cut(s) 118, 556, 623
Hpy99I CGWCG 3 cut(s) 503, 520, 592
HpyAV CCTTC 2 cut(s) 403, 457
HpyCH4III ACNGT 2 cut(s) 348, 357
HpyCH4V TGCA 5 cut(s) 4, 182, 188, 295, 424
HpyF10VI GCNNNNNNNGC 3 cut(s) 188, 318, 492
HpyF3I CTNAG 2 cut(s) 198, 624
Hsp92I GRCGYC 2 cut(s) 67, 587
Hsp92II CATG 1 cut(s) 271
HspAI GCGC 1 cut(s) 155
Kzo9I GATC 3 cut(s) 36, 325, 475
LmnI GCTCC 3 cut(s) 255, 491, 613
Lsp1109I GCAGC 4 cut(s) 200, 272, 307, 408
LweI GCATC 2 cut(s) 169, 191
MaeIII GTNAC 3 cut(s) 366, 442, 553
MalI GATC 3 cut(s) 38, 327, 477
MbiI CCGCTC 1 cut(s) 566
MboI GATC 3 cut(s) 36, 325, 475
MboII GAAGA 4 cut(s) 39, 70, 254, 513
MluCI AATT 1 cut(s) 633
MlyI GAGTC 4 cut(s) 112, 155, 374, 628
Mph1103I ATGCAT 2 cut(s) 6, 184
MseI TTAA 2 cut(s) 27, 338
MspA1I CMGCKG 1 cut(s) 453
MspI CCGG 7 cut(s) 253, 318, 471, 483, 508, 584, 600
MwoI GCNNNNNNNGC 3 cut(s) 188, 318, 492
NdeII GATC 3 cut(s) 36, 325, 475
NlaIII CATG 1 cut(s) 271
NlaIV GGNNCC 3 cut(s) 128, 487, 609
NmeAIII GCCGAG 1 cut(s) 519
NmuCI GTSAC 2 cut(s) 366, 553
NsiI ATGCAT 2 cut(s) 6, 184
PaqCI CACCTGC 1 cut(s) 426
PfeI GAWTC 1 cut(s) 533
PinAI ACCGGT 2 cut(s) 507, 599
PkrI GCNGC 7 cut(s) 190, 287, 297, 423, 455, 497, 565
PleI GAGTC 4 cut(s) 111, 154, 373, 627
PpsI GAGTC 4 cut(s) 111, 154, 373, 627
PspN4I GGNNCC 3 cut(s) 128, 487, 609
PspPI GGNCC 2 cut(s) 460, 505
PstI CTGCAG 1 cut(s) 190
RsaI GTAC 2 cut(s) 16, 359
RsaNI GTAC 2 cut(s) 15, 358
SaqAI TTAA 2 cut(s) 27, 338
SatI GCNGC 7 cut(s) 189, 286, 296, 422, 454, 496, 564
Sau3AI GATC 3 cut(s) 36, 325, 475
Sau96I GGNCC 2 cut(s) 460, 505
ScaI AGTACT 1 cut(s) 359
SchI GAGTC 4 cut(s) 112, 155, 374, 628
SfaNI GCATC 2 cut(s) 169, 191
SfcI CTRYAG 2 cut(s) 186, 353
SinI GGWCC 1 cut(s) 505
SmlI CTYRAG 1 cut(s) 116
SmoI CTYRAG 1 cut(s) 116
Sse9I AATT 1 cut(s) 633
SsiI CCGC 4 cut(s) 453, 495, 561, 564
StyI CCWWGG 2 cut(s) 150, 162
TaaI ACNGT 2 cut(s) 348, 357
TaqI TCGA 2 cut(s) 596, 617
TasI AATT 1 cut(s) 633
TatI WGTACW 1 cut(s) 357
TauI GCSGC 3 cut(s) 456, 498, 566
TfiI GAWTC 1 cut(s) 533
Tru1I TTAA 2 cut(s) 27, 338
Tru9I TTAA 2 cut(s) 27, 338
TseFI GTSAC 2 cut(s) 366, 553
TseI GCWGC 4 cut(s) 188, 285, 295, 421
Tsp45I GTSAC 2 cut(s) 366, 553
TspDTI ATGAA 1 cut(s) 284
TspGWI ACGGA 1 cut(s) 514
VpaK11BI GGWCC 1 cut(s) 505
XapI RAATTY 1 cut(s) 633
ZrmI AGTACT 1 cut(s) 359
Zsp2I ATGCAT 2 cut(s) 6, 184
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.