Rh2AG129300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0019468
Physical Location & Seq
Reverse (-)
11682737 .. 11683040
304 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG129300.1

Sequence Viewer

Length: 222 bp
ATGTCTGCAGATCACCTGCTGCAAATCCCTCTCTTACTTGCTACCTTTAGCGGCGAGGCCCAAGCAACCGGCGATCCCACCGGCTCCGATTGCGGCAACGAGGACCGGTCGCCGTCATCTTCCGTCTCCGATTCTCTCGGCGTGTTGAAAGTCATGACCGCCGCTCTCTTTCCTCCTCCAGCGTCGTCCTCGACCGGTTTCGACTCCGAGTTCGAGTCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

73

Amino Acids

7.43

Weight (kDa)

4.05

Isoelectric Point (pI)

61.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0019468)

Species Orthologous Gene IDs
rosa_laevigata RLG00000012759
rosa_multiflora Rmu_sc0003439.1_g000013
rosa_samantha Rh2AG129300 Rh2CG133100 Rh3CG273400 Rh4BG449800 Rh4DG170000 Rh6CG085000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 24
Acc36I ACCTGC 1 cut(s) 24
AccBSI CCGCTC 1 cut(s) 164
AciI CCGC 4 cut(s) 51, 93, 159, 162
AclWI GGATC 1 cut(s) 68
AgeI ACCGGT 2 cut(s) 105, 194
AgsI TTSAA 1 cut(s) 148
Alw26I GTCTC 1 cut(s) 130
AlwI GGATC 1 cut(s) 68
AoxI GGCC 1 cut(s) 57
ApeKI GCWGC 1 cut(s) 19
ArsI GACNNNNNNTTYG 1 cut(s) 194
AsiGI ACCGGT 2 cut(s) 105, 194
AspS9I GGNCC 2 cut(s) 58, 103
AsuHPI GGTGA 1 cut(s) 5
AvaII GGWCC 1 cut(s) 103
BbvI GCAGC 1 cut(s) 6
BceAI ACGGC 1 cut(s) 97
BcoDI GTCTC 1 cut(s) 130
BfmI CTRYAG 1 cut(s) 6
BfuAI ACCTGC 1 cut(s) 24
BisI GCNGC 4 cut(s) 20, 52, 94, 162
BlsI GCNGC 4 cut(s) 21, 53, 95, 163
Bme18I GGWCC 1 cut(s) 103
BmgT120I GGNCC 2 cut(s) 58, 103
BmiI GGNNCC 1 cut(s) 85
BpmI CTGGAG 1 cut(s) 162
BsaWI WCCGGW 2 cut(s) 105, 194
Bse118I RCCGGY 4 cut(s) 68, 80, 105, 194
BseRI GAGGAG 1 cut(s) 165
BseXI GCAGC 1 cut(s) 6
Bsh1285I CGRYCG 2 cut(s) 110, 195
BshFI GGCC 1 cut(s) 59
BshTI ACCGGT 2 cut(s) 105, 194
BsiEI CGRYCG 2 cut(s) 110, 195
BsiSI CCGG 4 cut(s) 69, 81, 106, 195
BsmAI GTCTC 1 cut(s) 130
BsmBI CGTCTC 1 cut(s) 130
BsnI GGCC 1 cut(s) 59
Bsp143I GATC 2 cut(s) 10, 73
BspACI CCGC 4 cut(s) 51, 93, 159, 162
BspANI GGCC 1 cut(s) 59
BspHI TCATGA 1 cut(s) 153
BspLI GGNNCC 1 cut(s) 85
BspMAI CTGCAG 1 cut(s) 10
BspMI ACCTGC 1 cut(s) 24
BspPI GGATC 1 cut(s) 68
BsrBI CCGCTC 1 cut(s) 164
BsrFI RCCGGY 4 cut(s) 68, 80, 105, 194
BssAI RCCGGY 4 cut(s) 68, 80, 105, 194
BssMI GATC 2 cut(s) 10, 73
BstKTI GATC 2 cut(s) 13, 76
BstMAI GTCTC 1 cut(s) 130
BstMBI GATC 2 cut(s) 10, 73
BstMCI CGRYCG 2 cut(s) 110, 195
BstMWI GCNNNNNNNGC 1 cut(s) 90
BstSFI CTRYAG 1 cut(s) 6
BstV1I GCAGC 1 cut(s) 6
BsuRI GGCC 1 cut(s) 59
BveI ACCTGC 1 cut(s) 24
CciI TCATGA 1 cut(s) 153
Cfr10I RCCGGY 4 cut(s) 68, 80, 105, 194
Cfr13I GGNCC 2 cut(s) 58, 103
CseI GACGC 1 cut(s) 171
CspAI ACCGGT 2 cut(s) 105, 194
CviAII CATG 1 cut(s) 154
CviJI RGCY 2 cut(s) 59, 84
CviKI_1 RGCY 2 cut(s) 59, 84
DpnI GATC 2 cut(s) 12, 75
DpnII GATC 2 cut(s) 10, 73
Eco47I GGWCC 1 cut(s) 103
Esp3I CGTCTC 1 cut(s) 130
FaeI CATG 1 cut(s) 157
FaiI YATR 1 cut(s) 155
FatI CATG 1 cut(s) 153
Fnu4HI GCNGC 4 cut(s) 20, 52, 94, 162
Fsp4HI GCNGC 4 cut(s) 20, 52, 94, 162
GluI GCNGC 4 cut(s) 20, 52, 94, 162
GsuI CTGGAG 1 cut(s) 162
HaeIII GGCC 1 cut(s) 59
HapII CCGG 4 cut(s) 69, 81, 106, 195
HgaI GACGC 1 cut(s) 171
Hin1II CATG 1 cut(s) 157
HinfI GANTC 3 cut(s) 131, 203, 215
HpaII CCGG 4 cut(s) 69, 81, 106, 195
HphI GGTGA 1 cut(s) 5
Hpy188I TCNGA 3 cut(s) 88, 130, 208
Hpy188III TCNNGA 2 cut(s) 154, 219
Hpy99I CGWCG 1 cut(s) 187
HpyCH4V TGCA 2 cut(s) 8, 22
HpyF10VI GCNNNNNNNGC 1 cut(s) 90
Hsp92II CATG 1 cut(s) 157
Kzo9I GATC 2 cut(s) 10, 73
LmnI GCTCC 1 cut(s) 89
LpnPI CCDG 6 cut(s) 29, 82, 94, 119, 192, 208
Lsp1109I GCAGC 1 cut(s) 6
MalI GATC 2 cut(s) 12, 75
MbiI CCGCTC 1 cut(s) 164
MboI GATC 2 cut(s) 10, 73
MboII GAAGA 1 cut(s) 111
MlyI GAGTC 1 cut(s) 197
MnlI CCTC 6 cut(s) 39, 49, 94, 183, 186, 199
MspI CCGG 4 cut(s) 69, 81, 106, 195
MwoI GCNNNNNNNGC 1 cut(s) 90
NdeII GATC 2 cut(s) 10, 73
NlaIII CATG 1 cut(s) 157
NlaIV GGNNCC 1 cut(s) 85
NmeAIII GCCGAG 1 cut(s) 117
PagI TCATGA 1 cut(s) 153
PaqCI CACCTGC 1 cut(s) 24
PfeI GAWTC 1 cut(s) 131
PinAI ACCGGT 2 cut(s) 105, 194
PkrI GCNGC 4 cut(s) 21, 53, 95, 163
PleI GAGTC 1 cut(s) 197
PpsI GAGTC 1 cut(s) 197
PspN4I GGNNCC 1 cut(s) 85
PspPI GGNCC 2 cut(s) 58, 103
PstI CTGCAG 1 cut(s) 10
SatI GCNGC 4 cut(s) 20, 52, 94, 162
Sau3AI GATC 2 cut(s) 10, 73
Sau96I GGNCC 2 cut(s) 58, 103
SchI GAGTC 1 cut(s) 197
SetI ASST 2 cut(s) 18, 47
SfcI CTRYAG 1 cut(s) 6
SinI GGWCC 1 cut(s) 103
SsiI CCGC 4 cut(s) 51, 93, 159, 162
TaqI TCGA 3 cut(s) 191, 201, 213
TauI GCSGC 3 cut(s) 54, 96, 164
TfiI GAWTC 1 cut(s) 131
TseI GCWGC 1 cut(s) 19
TspGWI ACGGA 1 cut(s) 112
VpaK11BI GGWCC 1 cut(s) 103
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.