Rmu_sc0003551.1_g000002

Belongs to the 14-3-3 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003551.1
OG0022840
Physical Location & Seq
Forward (+)
5784 .. 7231
1448 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 771 bp
atgcagatcgccgacgccagattcctagccatgtgcttcctcccccgcctcagtcgtcgtagccatgcgctacgaggagatggatccaccacggcatcggagctcaccgtcgaggagcgcatcgagcagaaggaggagggccgcaagaacgaggaggacgtggcgctcgtcaaggagtacagatccaaggtcgaggccgagctctctgaggtctgcgctagcatccttgaggattcgtctgattttcgtccatattttttccgattgggatcgccagcgacggcaatcgttttttttggagtttgcttatggttgactaagcttcggaggagtagatcttcggctgatttgttgagaataagcgaagatgtggcgggggtggtgatagagctccggcggggtcgacggcgacatcactctctccctcccccggctaaagttcaccaacgagcccacctaaggctgttttccggtgagacttcacaacttcacagcttcacagaaggcagaagggtgcccaaatcaatttcgtcacctgccccagtgactagtacctctaaacaccggaatccggcggccggtgaccggattccggcgaaaattggccggatttcggcgaccgcttaccggattccggcgaagttggccggaatcaggcggccggtgacaggaatccggcggccggtgaccggattccggcgaaaattggccggatttcggcgaccgcttaccggattccggcgaagttggccggaatcaggcggccggtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04011 ko04110 ko04114 ko04151 ko04390 ko04391 ko04722 ko05169 ko05203 map04011 map04110 map04114 map04151 map04390 map04391 map04722 map05169 map05203
Pfam Domains
Protein Families
14-3-3

Protein Analysis

256

Amino Acids

28.75

Weight (kDa)

11.25

Isoelectric Point (pI)

79.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0022840)

Species Orthologous Gene IDs
rosa_laevigata RLG00000003306
rosa_multiflora Rmu_sc0003551.1_g000002
rosa_samantha Rh5CG141400 Rh6AG119800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 544
Acc36I ACCTGC 1 cut(s) 544
AccB1I GGYRCC 1 cut(s) 514
AccI GTMKAC 1 cut(s) 403
AclWI GGATC 4 cut(s) 78, 91, 177, 277
AcoI YGGCCR 8 cut(s) 576, 604, 645, 659, 680, 708, 749, 763
AcyI GRCGYC 1 cut(s) 15
AfaI GTAC 2 cut(s) 179, 553
AhlI ACTAGT 1 cut(s) 548
AjiI CACGTC 1 cut(s) 160
AluBI AGCT 5 cut(s) 103, 202, 322, 391, 495
AluI AGCT 5 cut(s) 103, 202, 322, 391, 495
Alw21I GWGCWC 3 cut(s) 105, 204, 393
Alw26I GTCTC 1 cut(s) 470
AlwI GGATC 4 cut(s) 78, 91, 177, 277
AspLEI GCGC 4 cut(s) 70, 120, 166, 218
AspS9I GGNCC 1 cut(s) 139
AsuC2I CCSGG 1 cut(s) 431
AsuHPI GGTGA 8 cut(s) 97, 394, 434, 485, 525, 593, 676, 697
AsuNHI GCTAGC 1 cut(s) 218
AxyI CCTNAGG 1 cut(s) 458
BaeGI GKGCMC 1 cut(s) 519
BamHI GGATCC 1 cut(s) 83
BanI GGYRCC 1 cut(s) 514
BanII GRGCYC 4 cut(s) 105, 204, 393, 454
Bbv12I GWGCWC 3 cut(s) 105, 204, 393
BccI CCATC 1 cut(s) 74
BceAI ACGGC 3 cut(s) 108, 297, 422
BcnI CCSGG 1 cut(s) 431
BcoDI GTCTC 1 cut(s) 470
BcuI ACTAGT 1 cut(s) 548
BfaI CTAG 3 cut(s) 26, 219, 549
BfoI RGCGCY 1 cut(s) 167
BfuAI ACCTGC 1 cut(s) 544
BglII AGATCT 1 cut(s) 335
BisI GCNGC 5 cut(s) 142, 576, 659, 680, 763
BlsI GCNGC 5 cut(s) 143, 577, 660, 681, 764
Bme1390I CCNGG 1 cut(s) 431
BmgBI CACGTC 1 cut(s) 160
BmgT120I GGNCC 1 cut(s) 139
BmiI GGNNCC 2 cut(s) 85, 516
BmrFI CCNGG 1 cut(s) 431
BmrI ACTGGG 1 cut(s) 536
BmsI GCATC 3 cut(s) 104, 129, 231
BmtI GCTAGC 1 cut(s) 222
BmuI ACTGGG 1 cut(s) 536
BpuEI CTTGAG 1 cut(s) 248
BpuMI CCSGG 1 cut(s) 431
BsaBI GATNNNNATC 1 cut(s) 268
BsaHI GRCGYC 1 cut(s) 15
BsaJI CCNNGG 3 cut(s) 90, 186, 429
BsaWI WCCGGW 6 cut(s) 470, 564, 585, 627, 689, 731
Bse118I RCCGGY 4 cut(s) 578, 661, 682, 765
Bse1I ACTGG 1 cut(s) 542
Bse21I CCTNAGG 1 cut(s) 458
Bse8I GATNNNNATC 1 cut(s) 268
BseDI CCNNGG 3 cut(s) 90, 186, 429
BseGI GGATG 1 cut(s) 222
BseJI GATNNNNATC 1 cut(s) 268
BseMII CTCAG 2 cut(s) 64, 198
BseNI ACTGG 1 cut(s) 542
BseRI GAGGAG 5 cut(s) 90, 128, 149, 167, 343
BseSI GKGCMC 1 cut(s) 519
BseX3I CGGCCG 4 cut(s) 576, 659, 680, 763
Bsh1285I CGRYCG 6 cut(s) 579, 621, 662, 683, 725, 766
BshNI GGYRCC 1 cut(s) 514
BsiEI CGRYCG 6 cut(s) 579, 621, 662, 683, 725, 766
BsiHKAI GWGCWC 3 cut(s) 105, 204, 393
BsmAI GTCTC 1 cut(s) 470
Bsp1286I GDGCHC 5 cut(s) 105, 204, 393, 454, 519
Bsp143I GATC 5 cut(s) 6, 83, 182, 269, 335
BspCNI CTCAG 2 cut(s) 63, 199
BspLI GGNNCC 2 cut(s) 85, 516
BspMI ACCTGC 1 cut(s) 544
BspOI GCTAGC 1 cut(s) 222
BspPI GGATC 4 cut(s) 78, 91, 177, 277
BspT107I GGYRCC 1 cut(s) 514
BsrFI RCCGGY 4 cut(s) 578, 661, 682, 765
BsrI ACTGG 1 cut(s) 542
BssAI RCCGGY 4 cut(s) 578, 661, 682, 765
BssECI CCNNGG 3 cut(s) 90, 186, 429
BssMI GATC 5 cut(s) 6, 83, 182, 269, 335
BssNI GRCGYC 1 cut(s) 15
BssT1I CCWWGG 1 cut(s) 186
Bst4CI ACNGT 1 cut(s) 109
BstACI GRCGYC 1 cut(s) 15
BstC8I GCNNGC 2 cut(s) 220, 276
BstDEI CTNAG 4 cut(s) 50, 207, 318, 458
BstDSI CCRYGG 1 cut(s) 90
BstEII GGTNACC 2 cut(s) 581, 685
BstF5I GGATG 1 cut(s) 222
BstH2I RGCGCY 1 cut(s) 167
BstHHI GCGC 4 cut(s) 70, 120, 166, 218
BstKTI GATC 5 cut(s) 9, 86, 185, 272, 338
BstMAI GTCTC 1 cut(s) 470
BstMBI GATC 5 cut(s) 6, 83, 182, 269, 335
BstMCI CGRYCG 6 cut(s) 579, 621, 662, 683, 725, 766
BstMWI GCNNNNNNNGC 3 cut(s) 124, 644, 748
BstPI GGTNACC 2 cut(s) 581, 685
BstSCI CCNGG 1 cut(s) 429
BstSLI GKGCMC 1 cut(s) 519
BstX2I RGATCY 3 cut(s) 83, 182, 335
BstYI RGATCY 3 cut(s) 83, 182, 335
BstZI CGGCCG 4 cut(s) 576, 659, 680, 763
Bsu36I CCTNAGG 1 cut(s) 458
BtgI CCRYGG 1 cut(s) 90
BtrI CACGTC 1 cut(s) 160
BtsCI GGATG 1 cut(s) 222
BtsIMutI CAGTG 1 cut(s) 549
BveI ACCTGC 1 cut(s) 544
Cac8I GCNNGC 2 cut(s) 220, 276
CfoI GCGC 4 cut(s) 70, 120, 166, 218
Cfr10I RCCGGY 4 cut(s) 578, 661, 682, 765
Cfr13I GGNCC 1 cut(s) 139
CseI GACGC 1 cut(s) 23
Csp6I GTAC 2 cut(s) 178, 552
CviAII CATG 2 cut(s) 31, 65
CviQI GTAC 2 cut(s) 178, 552
DdeI CTNAG 4 cut(s) 50, 207, 318, 458
DpnI GATC 5 cut(s) 8, 85, 184, 271, 337
DpnII GATC 5 cut(s) 6, 83, 182, 269, 335
EaeI YGGCCR 8 cut(s) 576, 604, 645, 659, 680, 708, 749, 763
EagI CGGCCG 4 cut(s) 576, 659, 680, 763
Ecl136II GAGCTC 3 cut(s) 103, 202, 391
EclXI CGGCCG 4 cut(s) 576, 659, 680, 763
Eco130I CCWWGG 1 cut(s) 186
Eco24I GRGCYC 4 cut(s) 105, 204, 393, 454
Eco52I CGGCCG 4 cut(s) 576, 659, 680, 763
Eco53kI GAGCTC 3 cut(s) 103, 202, 391
Eco81I CCTNAGG 1 cut(s) 458
Eco91I GGTNACC 2 cut(s) 581, 685
EcoICRI GAGCTC 3 cut(s) 103, 202, 391
EcoO65I GGTNACC 2 cut(s) 581, 685
EcoT14I CCWWGG 1 cut(s) 186
EcoT38I GRGCYC 4 cut(s) 105, 204, 393, 454
ErhI CCWWGG 1 cut(s) 186
FaeI CATG 2 cut(s) 34, 68
FaiI YATR 4 cut(s) 32, 66, 253, 310
FatI CATG 2 cut(s) 30, 64
FauI CCCGC 3 cut(s) 53, 367, 390
FblI GTMKAC 1 cut(s) 403
Fnu4HI GCNGC 5 cut(s) 142, 576, 659, 680, 763
FokI GGATG 1 cut(s) 209
FriOI GRGCYC 4 cut(s) 105, 204, 393, 454
Fsp4HI GCNGC 5 cut(s) 142, 576, 659, 680, 763
FspBI CTAG 3 cut(s) 26, 219, 549
GlaI GCGC 4 cut(s) 69, 119, 165, 217
GluI GCNGC 5 cut(s) 142, 576, 659, 680, 763
HaeII RGCGCY 1 cut(s) 167
HgaI GACGC 1 cut(s) 23
HhaI GCGC 4 cut(s) 70, 120, 166, 218
Hin1I GRCGYC 1 cut(s) 15
Hin1II CATG 2 cut(s) 34, 68
Hin6I GCGC 4 cut(s) 68, 118, 164, 216
HinP1I GCGC 4 cut(s) 68, 118, 164, 216
HincII GTYRAC 2 cut(s) 315, 404
HindII GTYRAC 2 cut(s) 315, 404
HindIII AAGCTT 1 cut(s) 320
HphI GGTGA 8 cut(s) 97, 394, 434, 485, 525, 593, 676, 697
Hpy166II GTNNAC 3 cut(s) 315, 404, 442
Hpy188I TCNGA 5 cut(s) 100, 208, 241, 263, 327
Hpy8I GTNNAC 3 cut(s) 315, 404, 442
Hpy99I CGWCG 5 cut(s) 17, 60, 113, 283, 408
HpyAV CCTTC 3 cut(s) 124, 497, 504
HpyCH4III ACNGT 1 cut(s) 109
HpyCH4IV ACGT 1 cut(s) 159
HpyCH4V TGCA 1 cut(s) 4
HpyF10VI GCNNNNNNNGC 3 cut(s) 124, 644, 748
HpyF3I CTNAG 4 cut(s) 50, 207, 318, 458
HpySE526I ACGT 1 cut(s) 159
Hsp92I GRCGYC 1 cut(s) 15
Hsp92II CATG 2 cut(s) 34, 68
HspAI GCGC 4 cut(s) 68, 118, 164, 216
Kzo9I GATC 5 cut(s) 6, 83, 182, 269, 335
LmnI GCTCC 3 cut(s) 100, 115, 396
LweI GCATC 3 cut(s) 104, 129, 231
MaeI CTAG 3 cut(s) 26, 219, 549
MaeII ACGT 1 cut(s) 159
MaeIII GTNAC 5 cut(s) 531, 544, 581, 664, 685
MalI GATC 5 cut(s) 8, 85, 184, 271, 337
MboI GATC 5 cut(s) 6, 83, 182, 269, 335
MboII GAAGA 2 cut(s) 330, 377
MflI RGATCY 3 cut(s) 83, 182, 335
MhlI GDGCHC 5 cut(s) 105, 204, 393, 454, 519
MluCI AATT 3 cut(s) 525, 600, 704
MspR9I CCNGG 1 cut(s) 431
MwoI GCNNNNNNNGC 3 cut(s) 124, 644, 748
NciI CCSGG 1 cut(s) 431
NdeII GATC 5 cut(s) 6, 83, 182, 269, 335
NheI GCTAGC 1 cut(s) 218
NlaIII CATG 2 cut(s) 34, 68
NlaIV GGNNCC 2 cut(s) 85, 516
NmeAIII GCCGAG 1 cut(s) 223
NmuCI GTSAC 5 cut(s) 531, 544, 581, 664, 685
PaqCI CACCTGC 1 cut(s) 544
PcsI WCGNNNNNNNCGW 2 cut(s) 156, 165
PkrI GCNGC 5 cut(s) 143, 577, 660, 681, 764
Psp124BI GAGCTC 3 cut(s) 105, 204, 393
PspEI GGTNACC 2 cut(s) 581, 685
PspN4I GGNNCC 2 cut(s) 85, 516
PspPI GGNCC 1 cut(s) 139
PsuI RGATCY 3 cut(s) 83, 182, 335
RsaI GTAC 2 cut(s) 179, 553
RsaNI GTAC 2 cut(s) 178, 552
SacI GAGCTC 3 cut(s) 105, 204, 393
SalI GTCGAC 1 cut(s) 402
SatI GCNGC 5 cut(s) 142, 576, 659, 680, 763
Sau3AI GATC 5 cut(s) 6, 83, 182, 269, 335
Sau96I GGNCC 1 cut(s) 139
ScrFI CCNGG 1 cut(s) 431
SduI GDGCHC 5 cut(s) 105, 204, 393, 454, 519
SfaNI GCATC 3 cut(s) 104, 129, 231
SmlI CTYRAG 1 cut(s) 227
SmoI CTYRAG 1 cut(s) 227
SpeI ACTAGT 1 cut(s) 548
Sse9I AATT 3 cut(s) 525, 600, 704
SspMI CTAG 3 cut(s) 26, 219, 549
SstI GAGCTC 3 cut(s) 105, 204, 393
StyD4I CCNGG 1 cut(s) 429
StyI CCWWGG 1 cut(s) 186
TaaI ACNGT 1 cut(s) 109
TaiI ACGT 1 cut(s) 162
TaqI TCGA 4 cut(s) 111, 123, 192, 403
TasI AATT 3 cut(s) 525, 600, 704
TatI WGTACW 1 cut(s) 177
TauI GCSGC 5 cut(s) 144, 578, 661, 682, 765
TscAI CASTG 1 cut(s) 549
TseFI GTSAC 5 cut(s) 531, 544, 581, 664, 685
Tsp45I GTSAC 5 cut(s) 531, 544, 581, 664, 685
TspRI CASTG 1 cut(s) 549
XmiI GTMKAC 1 cut(s) 403
XspI CTAG 3 cut(s) 26, 219, 549
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.