Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0022840

Physical Location & Seq

Genomic Coordinates Reverse (-)

17979976 .. 17980293

Gene Structure 318 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG119800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGCAGATCGCCGACGCCAGATTCCTAGCCATGTGCTTCCTCCCCCGGCTCAGTCGTCGTAGCCATGCGCTACGAGGAGATGGATCCACCACGGCGTCGGAGCTCACCGTCGAGGAGCGCATCGAGCAGAAGGAGGAGGGCCGCAAGAACGAGGATGACGTGGCACTCGTCAAGGAGTACAGATCCAAGGTCGAGGCCGAGCTCTCTGAGGTCTGCGCTAGCATGCTTGAGGATTCGTCTGATTTTCGTCCATATTTTTTCCGATTGGGATCGCCAGCGACGGCAATCGTTTTTTTTTTGGAGTTTGCTTATGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04011 ko04110 ko04114 ko04151 ko04390 ko04391 ko04722 ko05169 ko05203 map04011 map04110 map04114 map04151 map04390 map04391 map04722 map05169 map05203

Pfam Domains

Protein Families

14-3-3

Protein Analysis

105

Amino Acids

11.94

Weight (kDa)

4.91

Isoelectric Point (pI)

52.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0022840)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000003306
rosa_multiflora	Rmu_sc0003551.1_g000002
rosa_samantha	Rh5CG141400 Rh6AG119800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	142
AclWI	GGATC	4 cut(s)	78, 91, 177, 277
AcyI	GRCGYC	2 cut(s)	15, 95
AfaI	GTAC	1 cut(s)	179
AjiI	CACGTC	1 cut(s)	160
AluBI	AGCT	2 cut(s)	103, 202
AluI	AGCT	2 cut(s)	103, 202
Alw21I	GWGCWC	2 cut(s)	105, 204
AlwI	GGATC	4 cut(s)	78, 91, 177, 277
AoxI	GGCC	2 cut(s)	139, 195
AspLEI	GCGC	3 cut(s)	70, 120, 218
AspS9I	GGNCC	1 cut(s)	139
AsuC2I	CCSGG	1 cut(s)	46
AsuHPI	GGTGA	1 cut(s)	97
AsuNHI	GCTAGC	1 cut(s)	218
BamHI	GGATCC	1 cut(s)	83
BanII	GRGCYC	2 cut(s)	105, 204
Bbv12I	GWGCWC	2 cut(s)	105, 204
BccI	CCATC	1 cut(s)	74
BceAI	ACGGC	2 cut(s)	108, 297
BcnI	CCSGG	1 cut(s)	46
BfaI	CTAG	2 cut(s)	26, 219
BisI	GCNGC	1 cut(s)	142
BlsI	GCNGC	1 cut(s)	143
Bme1390I	CCNGG	1 cut(s)	46
BmgBI	CACGTC	1 cut(s)	160
BmgT120I	GGNCC	1 cut(s)	139
BmiI	GGNNCC	1 cut(s)	85
BmrFI	CCNGG	1 cut(s)	46
BmsI	GCATC	1 cut(s)	129
BmtI	GCTAGC	1 cut(s)	222
BpuEI	CTTGAG	1 cut(s)	248
BpuMI	CCSGG	1 cut(s)	46
BsaBI	GATNNNNATC	1 cut(s)	268
BsaHI	GRCGYC	2 cut(s)	15, 95
BsaJI	CCNNGG	3 cut(s)	44, 90, 186
Bse8I	GATNNNNATC	1 cut(s)	268
BseDI	CCNNGG	3 cut(s)	44, 90, 186
BseGI	GGATG	1 cut(s)	160
BseJI	GATNNNNATC	1 cut(s)	268
BseMII	CTCAG	2 cut(s)	64, 198
BseRI	GAGGAG	3 cut(s)	90, 128, 149
BshFI	GGCC	2 cut(s)	141, 197
BsiHKAI	GWGCWC	2 cut(s)	105, 204
BsiSI	CCGG	1 cut(s)	46
BsnI	GGCC	2 cut(s)	141, 197
Bsp1286I	GDGCHC	2 cut(s)	105, 204
Bsp143I	GATC	4 cut(s)	6, 83, 182, 269
BspACI	CCGC	1 cut(s)	142
BspANI	GGCC	2 cut(s)	141, 197
BspCNI	CTCAG	2 cut(s)	63, 199
BspLI	GGNNCC	1 cut(s)	85
BspOI	GCTAGC	1 cut(s)	222
BspPI	GGATC	4 cut(s)	78, 91, 177, 277
BssECI	CCNNGG	3 cut(s)	44, 90, 186
BssMI	GATC	4 cut(s)	6, 83, 182, 269
BssNI	GRCGYC	2 cut(s)	15, 95
BssT1I	CCWWGG	1 cut(s)	186
Bst4CI	ACNGT	1 cut(s)	109
BstACI	GRCGYC	2 cut(s)	15, 95
BstC8I	GCNNGC	3 cut(s)	220, 224, 276
BstDEI	CTNAG	2 cut(s)	50, 207
BstDSI	CCRYGG	1 cut(s)	90
BstF5I	GGATG	1 cut(s)	160
BstHHI	GCGC	3 cut(s)	70, 120, 218
BstKTI	GATC	4 cut(s)	9, 86, 185, 272
BstMBI	GATC	4 cut(s)	6, 83, 182, 269
BstMWI	GCNNNNNNNGC	1 cut(s)	124
BstNSI	RCATGY	1 cut(s)	226
BstSCI	CCNGG	1 cut(s)	44
BstX2I	RGATCY	2 cut(s)	83, 182
BstYI	RGATCY	2 cut(s)	83, 182
BsuRI	GGCC	2 cut(s)	141, 197
BtgI	CCRYGG	1 cut(s)	90
BtrI	CACGTC	1 cut(s)	160
BtsCI	GGATG	1 cut(s)	160
Cac8I	GCNNGC	3 cut(s)	220, 224, 276
CfoI	GCGC	3 cut(s)	70, 120, 218
Cfr13I	GGNCC	1 cut(s)	139
CseI	GACGC	2 cut(s)	23, 84
Csp6I	GTAC	1 cut(s)	178
CviAII	CATG	3 cut(s)	31, 65, 223
CviJI	RGCY	7 cut(s)	29, 49, 63, 103, 141, 197, 202
CviKI_1	RGCY	7 cut(s)	29, 49, 63, 103, 141, 197, 202
CviQI	GTAC	1 cut(s)	178
DdeI	CTNAG	2 cut(s)	50, 207
DpnI	GATC	4 cut(s)	8, 85, 184, 271
DpnII	GATC	4 cut(s)	6, 83, 182, 269
Ecl136II	GAGCTC	2 cut(s)	103, 202
Eco130I	CCWWGG	1 cut(s)	186
Eco24I	GRGCYC	2 cut(s)	105, 204
Eco53kI	GAGCTC	2 cut(s)	103, 202
EcoICRI	GAGCTC	2 cut(s)	103, 202
EcoT14I	CCWWGG	1 cut(s)	186
EcoT38I	GRGCYC	2 cut(s)	105, 204
ErhI	CCWWGG	1 cut(s)	186
FaeI	CATG	3 cut(s)	34, 68, 226
FaiI	YATR	5 cut(s)	32, 66, 224, 253, 312
FatI	CATG	3 cut(s)	30, 64, 222
Fnu4HI	GCNGC	1 cut(s)	142
FokI	GGATG	1 cut(s)	167
FriOI	GRGCYC	2 cut(s)	105, 204
Fsp4HI	GCNGC	1 cut(s)	142
FspBI	CTAG	2 cut(s)	26, 219
GlaI	GCGC	3 cut(s)	69, 119, 217
GluI	GCNGC	1 cut(s)	142
HaeIII	GGCC	2 cut(s)	141, 197
HapII	CCGG	1 cut(s)	46
HgaI	GACGC	2 cut(s)	23, 84
HhaI	GCGC	3 cut(s)	70, 120, 218
Hin1I	GRCGYC	2 cut(s)	15, 95
Hin1II	CATG	3 cut(s)	34, 68, 226
Hin6I	GCGC	3 cut(s)	68, 118, 216
HinP1I	GCGC	3 cut(s)	68, 118, 216
HinfI	GANTC	2 cut(s)	21, 233
HpaII	CCGG	1 cut(s)	46
HphI	GGTGA	1 cut(s)	97
Hpy188I	TCNGA	4 cut(s)	100, 208, 241, 263
Hpy99I	CGWCG	5 cut(s)	17, 60, 100, 113, 283
HpyAV	CCTTC	1 cut(s)	124
HpyCH4III	ACNGT	1 cut(s)	109
HpyCH4IV	ACGT	1 cut(s)	159
HpyCH4V	TGCA	1 cut(s)	4
HpyF10VI	GCNNNNNNNGC	1 cut(s)	124
HpyF3I	CTNAG	2 cut(s)	50, 207
HpySE526I	ACGT	1 cut(s)	159
Hsp92I	GRCGYC	2 cut(s)	15, 95
Hsp92II	CATG	3 cut(s)	34, 68, 226
HspAI	GCGC	3 cut(s)	68, 118, 216
Kzo9I	GATC	4 cut(s)	6, 83, 182, 269
LmnI	GCTCC	2 cut(s)	100, 115
LpnPI	CCDG	3 cut(s)	31, 59, 288
LweI	GCATC	1 cut(s)	129
MaeI	CTAG	2 cut(s)	26, 219
MaeII	ACGT	1 cut(s)	159
MalI	GATC	4 cut(s)	8, 85, 184, 271
MboI	GATC	4 cut(s)	6, 83, 182, 269
MflI	RGATCY	2 cut(s)	83, 182
MhlI	GDGCHC	2 cut(s)	105, 204
MmeI	TCCRAC	1 cut(s)	78
MnlI	CCTC	9 cut(s)	50, 68, 106, 127, 130, 145, 187, 202, 223
MspI	CCGG	1 cut(s)	46
MspR9I	CCNGG	1 cut(s)	46
MwoI	GCNNNNNNNGC	1 cut(s)	124
NciI	CCSGG	1 cut(s)	46
NdeII	GATC	4 cut(s)	6, 83, 182, 269
NheI	GCTAGC	1 cut(s)	218
NlaIII	CATG	3 cut(s)	34, 68, 226
NlaIV	GGNNCC	1 cut(s)	85
NmeAIII	GCCGAG	1 cut(s)	223
NspI	RCATGY	1 cut(s)	226
PaeI	GCATGC	1 cut(s)	226
PcsI	WCGNNNNNNNCGW	2 cut(s)	156, 165
PfeI	GAWTC	2 cut(s)	21, 233
PkrI	GCNGC	1 cut(s)	143
Psp124BI	GAGCTC	2 cut(s)	105, 204
PspN4I	GGNNCC	1 cut(s)	85
PspPI	GGNCC	1 cut(s)	139
PsuI	RGATCY	2 cut(s)	83, 182
RsaI	GTAC	1 cut(s)	179
RsaNI	GTAC	1 cut(s)	178
SacI	GAGCTC	2 cut(s)	105, 204
SatI	GCNGC	1 cut(s)	142
Sau3AI	GATC	4 cut(s)	6, 83, 182, 269
Sau96I	GGNCC	1 cut(s)	139
ScrFI	CCNGG	1 cut(s)	46
SduI	GDGCHC	2 cut(s)	105, 204
SetI	ASST	5 cut(s)	105, 162, 192, 204, 213
SfaNI	GCATC	1 cut(s)	129
SmlI	CTYRAG	1 cut(s)	227
SmoI	CTYRAG	1 cut(s)	227
SphI	GCATGC	1 cut(s)	226
SsiI	CCGC	1 cut(s)	142
SspMI	CTAG	2 cut(s)	26, 219
SstI	GAGCTC	2 cut(s)	105, 204
StyD4I	CCNGG	1 cut(s)	44
StyI	CCWWGG	1 cut(s)	186
TaaI	ACNGT	1 cut(s)	109
TaiI	ACGT	1 cut(s)	162
TaqI	TCGA	3 cut(s)	111, 123, 192
TatI	WGTACW	1 cut(s)	177
TauI	GCSGC	1 cut(s)	144
TfiI	GAWTC	2 cut(s)	21, 233
XceI	RCATGY	1 cut(s)	226
XspI	CTAG	2 cut(s)	26, 219

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.