Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0022840

Physical Location & Seq

Genomic Coordinates Forward (+)

12392646 .. 12392981

Gene Structure 336 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG141400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

ATGCAGATCGCCGACGCCAGATTCCTAGCCATGTGCTTCCTCCCCCGGCTCAGTCGTCGTAGCCATGCGCTACGAGGAGATGGATCCACCACAGCGTCGGAGCTCACCGTCGAGGAGCGCATCGAGCAGAAGGAGGAGGGCCGCAAGAACGAGGAGGACGTGGCGCTCGTCAAGGAGTACAGATCCAAGGTCGAGGCCGAGCTCTCTGAGGTCTGCGCTAGCATCCTTGAGGATTCGTCTGATTTTCGTCCATATTTTTTCCGATTGGGATCGCCAGCGACGGCAATCGTTTTTTTTTGGAGTTTGCTTATGGTTGACTCAGCTTCGGAGGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04011 ko04110 ko04114 ko04151 ko04390 ko04391 ko04722 ko05169 ko05203 map04011 map04110 map04114 map04151 map04390 map04391 map04722 map05169 map05203

Pfam Domains

Protein Families

14-3-3

Protein Analysis

111

Amino Acids

12.6

Weight (kDa)

4.79

Isoelectric Point (pI)

60.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0022840)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000003306
rosa_multiflora	Rmu_sc0003551.1_g000002
rosa_samantha	Rh5CG141400 Rh6AG119800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	142
AclWI	GGATC	4 cut(s)	78, 91, 177, 277
AcyI	GRCGYC	1 cut(s)	15
AfaI	GTAC	1 cut(s)	179
AjiI	CACGTC	1 cut(s)	160
AluBI	AGCT	3 cut(s)	103, 202, 323
AluI	AGCT	3 cut(s)	103, 202, 323
Alw21I	GWGCWC	2 cut(s)	105, 204
AlwI	GGATC	4 cut(s)	78, 91, 177, 277
AoxI	GGCC	2 cut(s)	139, 195
AspLEI	GCGC	4 cut(s)	70, 120, 166, 218
AspS9I	GGNCC	1 cut(s)	139
AsuC2I	CCSGG	1 cut(s)	46
AsuHPI	GGTGA	1 cut(s)	97
AsuNHI	GCTAGC	1 cut(s)	218
BamHI	GGATCC	1 cut(s)	83
BanII	GRGCYC	2 cut(s)	105, 204
Bbv12I	GWGCWC	2 cut(s)	105, 204
BccI	CCATC	1 cut(s)	74
BceAI	ACGGC	1 cut(s)	297
BcnI	CCSGG	1 cut(s)	46
BfaI	CTAG	2 cut(s)	26, 219
BfoI	RGCGCY	1 cut(s)	167
BisI	GCNGC	1 cut(s)	142
BlsI	GCNGC	1 cut(s)	143
Bme1390I	CCNGG	1 cut(s)	46
BmgBI	CACGTC	1 cut(s)	160
BmgT120I	GGNCC	1 cut(s)	139
BmiI	GGNNCC	1 cut(s)	85
BmrFI	CCNGG	1 cut(s)	46
BmsI	GCATC	2 cut(s)	129, 231
BmtI	GCTAGC	1 cut(s)	222
BpuEI	CTTGAG	1 cut(s)	248
BpuMI	CCSGG	1 cut(s)	46
BsaBI	GATNNNNATC	1 cut(s)	268
BsaHI	GRCGYC	1 cut(s)	15
BsaJI	CCNNGG	2 cut(s)	44, 186
Bse8I	GATNNNNATC	1 cut(s)	268
BseDI	CCNNGG	2 cut(s)	44, 186
BseGI	GGATG	1 cut(s)	222
BseJI	GATNNNNATC	1 cut(s)	268
BseMII	CTCAG	3 cut(s)	64, 198, 333
BseRI	GAGGAG	4 cut(s)	90, 128, 149, 167
BshFI	GGCC	2 cut(s)	141, 197
BsiHKAI	GWGCWC	2 cut(s)	105, 204
BsiSI	CCGG	1 cut(s)	46
BsnI	GGCC	2 cut(s)	141, 197
Bsp1286I	GDGCHC	2 cut(s)	105, 204
Bsp143I	GATC	4 cut(s)	6, 83, 182, 269
BspACI	CCGC	1 cut(s)	142
BspANI	GGCC	2 cut(s)	141, 197
BspCNI	CTCAG	3 cut(s)	63, 199, 332
BspLI	GGNNCC	1 cut(s)	85
BspOI	GCTAGC	1 cut(s)	222
BspPI	GGATC	4 cut(s)	78, 91, 177, 277
BssECI	CCNNGG	2 cut(s)	44, 186
BssMI	GATC	4 cut(s)	6, 83, 182, 269
BssNI	GRCGYC	1 cut(s)	15
BssT1I	CCWWGG	1 cut(s)	186
Bst4CI	ACNGT	1 cut(s)	109
BstACI	GRCGYC	1 cut(s)	15
BstC8I	GCNNGC	2 cut(s)	220, 276
BstDEI	CTNAG	3 cut(s)	50, 207, 319
BstF5I	GGATG	1 cut(s)	222
BstH2I	RGCGCY	1 cut(s)	167
BstHHI	GCGC	4 cut(s)	70, 120, 166, 218
BstKTI	GATC	4 cut(s)	9, 86, 185, 272
BstMBI	GATC	4 cut(s)	6, 83, 182, 269
BstMWI	GCNNNNNNNGC	1 cut(s)	124
BstSCI	CCNGG	1 cut(s)	44
BstX2I	RGATCY	2 cut(s)	83, 182
BstYI	RGATCY	2 cut(s)	83, 182
BsuRI	GGCC	2 cut(s)	141, 197
BtrI	CACGTC	1 cut(s)	160
BtsCI	GGATG	1 cut(s)	222
Cac8I	GCNNGC	2 cut(s)	220, 276
CfoI	GCGC	4 cut(s)	70, 120, 166, 218
Cfr13I	GGNCC	1 cut(s)	139
CseI	GACGC	2 cut(s)	23, 84
Csp6I	GTAC	1 cut(s)	178
CviAII	CATG	2 cut(s)	31, 65
CviJI	RGCY	8 cut(s)	29, 49, 63, 103, 141, 197, 202, 323
CviKI_1	RGCY	8 cut(s)	29, 49, 63, 103, 141, 197, 202, 323
CviQI	GTAC	1 cut(s)	178
DdeI	CTNAG	3 cut(s)	50, 207, 319
DpnI	GATC	4 cut(s)	8, 85, 184, 271
DpnII	GATC	4 cut(s)	6, 83, 182, 269
Ecl136II	GAGCTC	2 cut(s)	103, 202
Eco130I	CCWWGG	1 cut(s)	186
Eco24I	GRGCYC	2 cut(s)	105, 204
Eco53kI	GAGCTC	2 cut(s)	103, 202
EcoICRI	GAGCTC	2 cut(s)	103, 202
EcoT14I	CCWWGG	1 cut(s)	186
EcoT38I	GRGCYC	2 cut(s)	105, 204
ErhI	CCWWGG	1 cut(s)	186
FaeI	CATG	2 cut(s)	34, 68
FaiI	YATR	4 cut(s)	32, 66, 253, 311
FatI	CATG	2 cut(s)	30, 64
Fnu4HI	GCNGC	1 cut(s)	142
FokI	GGATG	1 cut(s)	209
FriOI	GRGCYC	2 cut(s)	105, 204
Fsp4HI	GCNGC	1 cut(s)	142
FspBI	CTAG	2 cut(s)	26, 219
GlaI	GCGC	4 cut(s)	69, 119, 165, 217
GluI	GCNGC	1 cut(s)	142
HaeII	RGCGCY	1 cut(s)	167
HaeIII	GGCC	2 cut(s)	141, 197
HapII	CCGG	1 cut(s)	46
HgaI	GACGC	2 cut(s)	23, 84
HhaI	GCGC	4 cut(s)	70, 120, 166, 218
Hin1I	GRCGYC	1 cut(s)	15
Hin1II	CATG	2 cut(s)	34, 68
Hin6I	GCGC	4 cut(s)	68, 118, 164, 216
HinP1I	GCGC	4 cut(s)	68, 118, 164, 216
HincII	GTYRAC	1 cut(s)	316
HindII	GTYRAC	1 cut(s)	316
HinfI	GANTC	3 cut(s)	21, 233, 317
HpaII	CCGG	1 cut(s)	46
HphI	GGTGA	1 cut(s)	97
Hpy166II	GTNNAC	1 cut(s)	316
Hpy188I	TCNGA	5 cut(s)	100, 208, 241, 263, 328
Hpy8I	GTNNAC	1 cut(s)	316
Hpy99I	CGWCG	5 cut(s)	17, 60, 100, 113, 283
HpyAV	CCTTC	1 cut(s)	124
HpyCH4III	ACNGT	1 cut(s)	109
HpyCH4IV	ACGT	1 cut(s)	159
HpyCH4V	TGCA	1 cut(s)	4
HpyF10VI	GCNNNNNNNGC	1 cut(s)	124
HpyF3I	CTNAG	3 cut(s)	50, 207, 319
HpySE526I	ACGT	1 cut(s)	159
Hsp92I	GRCGYC	1 cut(s)	15
Hsp92II	CATG	2 cut(s)	34, 68
HspAI	GCGC	4 cut(s)	68, 118, 164, 216
Kzo9I	GATC	4 cut(s)	6, 83, 182, 269
LmnI	GCTCC	2 cut(s)	100, 115
LpnPI	CCDG	3 cut(s)	31, 59, 288
LweI	GCATC	2 cut(s)	129, 231
MaeI	CTAG	2 cut(s)	26, 219
MaeII	ACGT	1 cut(s)	159
MalI	GATC	4 cut(s)	8, 85, 184, 271
MboI	GATC	4 cut(s)	6, 83, 182, 269
MflI	RGATCY	2 cut(s)	83, 182
MhlI	GDGCHC	2 cut(s)	105, 204
MlyI	GAGTC	1 cut(s)	311
MmeI	TCCRAC	1 cut(s)	78
MspI	CCGG	1 cut(s)	46
MspR9I	CCNGG	1 cut(s)	46
MwoI	GCNNNNNNNGC	1 cut(s)	124
NciI	CCSGG	1 cut(s)	46
NdeII	GATC	4 cut(s)	6, 83, 182, 269
NheI	GCTAGC	1 cut(s)	218
NlaIII	CATG	2 cut(s)	34, 68
NlaIV	GGNNCC	1 cut(s)	85
NmeAIII	GCCGAG	1 cut(s)	223
PcsI	WCGNNNNNNNCGW	2 cut(s)	156, 165
PfeI	GAWTC	2 cut(s)	21, 233
PkrI	GCNGC	1 cut(s)	143
PleI	GAGTC	1 cut(s)	311
PpsI	GAGTC	1 cut(s)	311
Psp124BI	GAGCTC	2 cut(s)	105, 204
PspN4I	GGNNCC	1 cut(s)	85
PspPI	GGNCC	1 cut(s)	139
PsuI	RGATCY	2 cut(s)	83, 182
RsaI	GTAC	1 cut(s)	179
RsaNI	GTAC	1 cut(s)	178
SacI	GAGCTC	2 cut(s)	105, 204
SatI	GCNGC	1 cut(s)	142
Sau3AI	GATC	4 cut(s)	6, 83, 182, 269
Sau96I	GGNCC	1 cut(s)	139
SchI	GAGTC	1 cut(s)	311
ScrFI	CCNGG	1 cut(s)	46
SduI	GDGCHC	2 cut(s)	105, 204
SetI	ASST	6 cut(s)	105, 162, 192, 204, 213, 325
SfaNI	GCATC	2 cut(s)	129, 231
SmlI	CTYRAG	1 cut(s)	227
SmoI	CTYRAG	1 cut(s)	227
SsiI	CCGC	1 cut(s)	142
SspMI	CTAG	2 cut(s)	26, 219
SstI	GAGCTC	2 cut(s)	105, 204
StyD4I	CCNGG	1 cut(s)	44
StyI	CCWWGG	1 cut(s)	186
TaaI	ACNGT	1 cut(s)	109
TaiI	ACGT	1 cut(s)	162
TaqI	TCGA	3 cut(s)	111, 123, 192
TatI	WGTACW	1 cut(s)	177
TauI	GCSGC	1 cut(s)	144
TfiI	GAWTC	2 cut(s)	21, 233
XspI	CTAG	2 cut(s)	26, 219

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.