Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003554.1

Orthogroup ID

OG0025564

Physical Location & Seq

Genomic Coordinates Reverse (-)

489 .. 1934

Gene Structure 1446 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003554.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

atgacaataccaaggaaagagataaaaagagaggccagaagagaggaaaaggctgaaaaagctgcggtgttggataagagcatcgagaaagaactattaagccgccttaaggaaggaatgtatggtgatatatataactatccctttgataaattccaaaaactcattgaaggggaagaaatggaggtggatactgaaagagaacaagaagatgaggaggaggctgaaattgaatatgttgaaggttatgatgaacttgaagaggaagatgatattgaagatcttggtggttttgcaatggaccattctcatgcagacgatgatagtggtggagatgaagaagcagaagcagttactcgcaagagagagagaaaagaatctgattctagaaagtttggaaaagataaaggtgttgccaagttgaagaagcctagagtattgattgaggttgaatatgaagatacccgcgaaagacagaaggcagtttattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mak16 Ribosomal_L28e

Protein Analysis

163

Amino Acids

19.15

Weight (kDa)

4.57

Isoelectric Point (pI)

56.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0025564)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0003554.1_g000001
rosa_samantha	Rh7AG111600 Rh7DG115500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	468
AciI	CCGC	3 cut(s)	65, 103, 466
AcsI	RAATTY	1 cut(s)	152
AfiI	CCNNNNNNNGG	1 cut(s)	109
AflII	CTTAAG	1 cut(s)	107
AgsI	TTSAA	7 cut(s)	170, 233, 242, 260, 278, 424, 452
AluBI	AGCT	1 cut(s)	62
AluI	AGCT	1 cut(s)	62
AoxI	GGCC	1 cut(s)	33
ApeKI	GCWGC	1 cut(s)	62
ApoI	RAATTY	1 cut(s)	152
AspS9I	GGNCC	1 cut(s)	301
AsuHPI	GGTGA	1 cut(s)	137
AvaII	GGWCC	1 cut(s)	301
BbvI	GCAGC	1 cut(s)	49
BciVI	GTATCC	1 cut(s)	184
BfaI	CTAG	2 cut(s)	387, 432
BfrI	CTTAAG	1 cut(s)	107
BfuI	GTATCC	1 cut(s)	184
BglII	AGATCT	1 cut(s)	280
BisI	GCNGC	2 cut(s)	63, 103
BlsI	GCNGC	2 cut(s)	64, 104
Bme18I	GGWCC	1 cut(s)	301
BmgT120I	GGNCC	1 cut(s)	301
BmsI	GCATC	1 cut(s)	90
BsaJI	CCNNGG	1 cut(s)	11
Bsc4I	CCNNNNNNNGG	1 cut(s)	109
Bse3DI	GCAATG	1 cut(s)	303
BseDI	CCNNGG	1 cut(s)	11
BseLI	CCNNNNNNNGG	1 cut(s)	109
BseMI	GCAATG	1 cut(s)	303
BseRI	GAGGAG	2 cut(s)	230, 233
BseXI	GCAGC	1 cut(s)	49
Bsh1236I	CGCG	1 cut(s)	468
BshFI	GGCC	1 cut(s)	35
BslI	CCNNNNNNNGG	1 cut(s)	109
BsnI	GGCC	1 cut(s)	35
Bsp143I	GATC	1 cut(s)	280
BspACI	CCGC	3 cut(s)	65, 103, 466
BspANI	GGCC	1 cut(s)	35
BspFNI	CGCG	1 cut(s)	468
BspTI	CTTAAG	1 cut(s)	107
BsrDI	GCAATG	1 cut(s)	303
BssECI	CCNNGG	1 cut(s)	11
BssMI	GATC	1 cut(s)	280
BssT1I	CCWWGG	1 cut(s)	11
Bst6I	CTCTTC	2 cut(s)	34, 255
BstAFI	CTTAAG	1 cut(s)	107
BstFNI	CGCG	1 cut(s)	468
BstKTI	GATC	1 cut(s)	283
BstMBI	GATC	1 cut(s)	280
BstMWI	GCNNNNNNNGC	1 cut(s)	59
BstUI	CGCG	1 cut(s)	468
BstV1I	GCAGC	1 cut(s)	49
BstX2I	RGATCY	1 cut(s)	280
BstYI	RGATCY	1 cut(s)	280
BsuI	GTATCC	1 cut(s)	184
BsuRI	GGCC	1 cut(s)	35
Cfr13I	GGNCC	1 cut(s)	301
CviAII	CATG	1 cut(s)	311
CviJI	RGCY	6 cut(s)	35, 53, 62, 102, 224, 430
CviKI_1	RGCY	6 cut(s)	35, 53, 62, 102, 224, 430
DpnI	GATC	1 cut(s)	282
DpnII	GATC	1 cut(s)	280
Eam1104I	CTCTTC	2 cut(s)	34, 255
EarI	CTCTTC	2 cut(s)	34, 255
Eco130I	CCWWGG	1 cut(s)	11
Eco47I	GGWCC	1 cut(s)	301
EcoT14I	CCWWGG	1 cut(s)	11
ErhI	CCWWGG	1 cut(s)	11
FaeI	CATG	1 cut(s)	314
FaiI	YATR	8 cut(s)	123, 131, 133, 135, 237, 249, 312, 456
FatI	CATG	1 cut(s)	310
FauI	CCCGC	1 cut(s)	473
Fnu4HI	GCNGC	2 cut(s)	63, 103
Fsp4HI	GCNGC	2 cut(s)	63, 103
FspBI	CTAG	2 cut(s)	387, 432
GluI	GCNGC	2 cut(s)	63, 103
HaeIII	GGCC	1 cut(s)	35
Hin1II	CATG	1 cut(s)	314
HinfI	GANTC	2 cut(s)	377, 383
HphI	GGTGA	1 cut(s)	137
Hpy188I	TCNGA	1 cut(s)	382
Hpy188III	TCNNGA	2 cut(s)	85, 387
HpyAV	CCTTC	4 cut(s)	107, 164, 236, 472
HpyCH4V	TGCA	2 cut(s)	296, 314
HpyF10VI	GCNNNNNNNGC	1 cut(s)	59
Hsp92II	CATG	1 cut(s)	314
Kzo9I	GATC	1 cut(s)	280
LpnPI	CCDG	1 cut(s)	49
Lsp1109I	GCAGC	1 cut(s)	49
LweI	GCATC	1 cut(s)	90
MaeI	CTAG	2 cut(s)	387, 432
MaeIII	GTNAC	1 cut(s)	352
MalI	GATC	1 cut(s)	282
MboI	GATC	1 cut(s)	280
MboII	GAAGA	9 cut(s)	51, 188, 221, 272, 278, 290, 350, 436, 470
MflI	RGATCY	1 cut(s)	280
MluCI	AATT	2 cut(s)	152, 228
MmeI	TCCRAC	1 cut(s)	51
MnlI	CCTC	8 cut(s)	25, 37, 178, 208, 211, 214, 256, 439
MseI	TTAA	2 cut(s)	98, 108
MslI	CAYNNNNRTG	1 cut(s)	309
MspCI	CTTAAG	1 cut(s)	107
MvnI	CGCG	1 cut(s)	468
MwoI	GCNNNNNNNGC	1 cut(s)	59
NdeII	GATC	1 cut(s)	280
NlaIII	CATG	1 cut(s)	314
PfeI	GAWTC	2 cut(s)	377, 383
PkrI	GCNGC	2 cut(s)	64, 104
PspPI	GGNCC	1 cut(s)	301
PsuI	RGATCY	1 cut(s)	280
RseI	CAYNNNNRTG	1 cut(s)	309
SaqAI	TTAA	2 cut(s)	98, 108
SatI	GCNGC	2 cut(s)	63, 103
Sau3AI	GATC	1 cut(s)	280
Sau96I	GGNCC	1 cut(s)	301
SetI	ASST	5 cut(s)	64, 189, 247, 412, 450
SfaNI	GCATC	1 cut(s)	90
SinI	GGWCC	1 cut(s)	301
SmiMI	CAYNNNNRTG	1 cut(s)	309
SmlI	CTYRAG	1 cut(s)	107
SmoI	CTYRAG	1 cut(s)	107
Sse9I	AATT	2 cut(s)	152, 228
SsiI	CCGC	3 cut(s)	65, 103, 466
SspMI	CTAG	2 cut(s)	387, 432
StyI	CCWWGG	1 cut(s)	11
TaqI	TCGA	1 cut(s)	84
TasI	AATT	2 cut(s)	152, 228
TauI	GCSGC	1 cut(s)	105
TfiI	GAWTC	2 cut(s)	377, 383
Tru1I	TTAA	2 cut(s)	98, 108
Tru9I	TTAA	2 cut(s)	98, 108
TseI	GCWGC	1 cut(s)	62
TspDTI	ATGAA	3 cut(s)	267, 351, 471
Vha464I	CTTAAG	1 cut(s)	107
VpaK11BI	GGWCC	1 cut(s)	301
XapI	RAATTY	1 cut(s)	152
XbaI	TCTAGA	1 cut(s)	386
XspI	CTAG	2 cut(s)	387, 432

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.