Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003565.1

Orthogroup ID

OG0025472

Physical Location & Seq

Genomic Coordinates Forward (+)

13068 .. 13516

Gene Structure 449 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003565.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 330 bp

atgaggattacagtgttcactgccttcagcaatgtggttgttctactcttggtttttattctagaagacaatagctgcagaggtgcagttgatgcttcttctcttttatttgtctactctttggactatgcccttacccaattggctgatgggtctaaggctgcaaagaagggaggagaaagacaattcaatggtctgattgatgtctacaagaagacattgaaatctgatggtattgttaggcctgggactttagacccgagaaccggtagaaccggaccgagtcaaaccgaaaaagacggttcggttcgattccttgaaaacaaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000295 GO:0003674 GO:0005215 GO:0005346 GO:0005347 GO:0005471 GO:0005488 GO:0005507 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005773 GO:0005774 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006839 GO:0006855 GO:0006862 GO:0006996 GO:0007005 GO:0007006 GO:0008150 GO:0008509 GO:0008514 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0009987 GO:0015075 GO:0015215 GO:0015216 GO:0015217 GO:0015238 GO:0015291 GO:0015297 GO:0015301 GO:0015605 GO:0015711 GO:0015748 GO:0015865 GO:0015866 GO:0015867 GO:0015868 GO:0015893 GO:0015931 GO:0015932 GO:0016020 GO:0016021 GO:0016043 GO:0019866 GO:0022804 GO:0022857 GO:0030312 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0034220 GO:0042221 GO:0042493 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044429 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046902 GO:0046914 GO:0050896 GO:0051179 GO:0051234 GO:0051503 GO:0055085 GO:0061024 GO:0065007 GO:0065008 GO:0070013 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0090559 GO:0098588 GO:0098656 GO:0098805 GO:0099516 GO:1901264 GO:1901505 GO:1901679

KEGG Pathways

Metabolic & Signaling

ko00514 ko04020 ko04022 ko04217 ko04218 ko05012 ko05016 ko05166 map00514 map04020 map04022 map04217 map04218 map05012 map05016 map05166

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

109

Amino Acids

11.89

Weight (kDa)

9.16

Isoelectric Point (pI)

17.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0025472)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0000166.1_g000051 Rmu_sc0003565.1_g000006 Rmu_sc0014659.1_g000008

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	114, 207
AcuI	CTGAAG	1 cut(s)	10
AfiI	CCNNNNNNNGG	1 cut(s)	266
AgeI	ACCGGT	1 cut(s)	266
AgsI	TTSAA	3 cut(s)	190, 223, 320
AjnI	CCWGG	1 cut(s)	244
AluBI	AGCT	1 cut(s)	75
AluI	AGCT	1 cut(s)	75
Ama87I	CYCGRG	1 cut(s)	259
AoxI	GGCC	1 cut(s)	242
ApeKI	GCWGC	2 cut(s)	75, 161
AsiGI	ACCGGT	1 cut(s)	266
AspS9I	GGNCC	1 cut(s)	278
AvaI	CYCGRG	1 cut(s)	259
AvaII	GGWCC	1 cut(s)	278
BbsI	GAAGAC	2 cut(s)	72, 221
BbvI	GCAGC	2 cut(s)	62, 148
BccI	CCATC	2 cut(s)	143, 224
BciT130I	CCWGG	1 cut(s)	246
BfaI	CTAG	1 cut(s)	62
BfmI	CTRYAG	1 cut(s)	76
BisI	GCNGC	2 cut(s)	76, 162
BlsI	GCNGC	2 cut(s)	77, 163
Bme1390I	CCNGG	1 cut(s)	246
Bme18I	GGWCC	1 cut(s)	278
BmeT110I	CYCGRG	1 cut(s)	259
BmgT120I	GGNCC	1 cut(s)	278
BmrFI	CCNGG	1 cut(s)	246
BmsI	GCATC	1 cut(s)	82
BpiI	GAAGAC	2 cut(s)	72, 221
BsaJI	CCNNGG	1 cut(s)	245
BsaWI	WCCGGW	2 cut(s)	266, 275
Bsc4I	CCNNNNNNNGG	1 cut(s)	266
Bse118I	RCCGGY	1 cut(s)	266
Bse3DI	GCAATG	1 cut(s)	37
BseBI	CCWGG	1 cut(s)	246
BseDI	CCNNGG	1 cut(s)	245
BseLI	CCNNNNNNNGG	1 cut(s)	266
BseMI	GCAATG	1 cut(s)	37
BseRI	GAGGAG	1 cut(s)	189
BseXI	GCAGC	2 cut(s)	62, 148
BsgI	GTGCAG	1 cut(s)	105
BshFI	GGCC	1 cut(s)	244
BshTI	ACCGGT	1 cut(s)	266
BsiHKCI	CYCGRG	1 cut(s)	259
BsiSI	CCGG	2 cut(s)	267, 276
BslFI	GGGAC	1 cut(s)	262
BslI	CCNNNNNNNGG	1 cut(s)	266
BsmFI	GGGAC	1 cut(s)	262
BsnI	GGCC	1 cut(s)	244
BsoBI	CYCGRG	1 cut(s)	259
BspANI	GGCC	1 cut(s)	244
BspMAI	CTGCAG	1 cut(s)	80
BsrDI	GCAATG	1 cut(s)	37
BsrFI	RCCGGY	1 cut(s)	266
BssAI	RCCGGY	1 cut(s)	266
BssECI	CCNNGG	1 cut(s)	245
Bst2UI	CCWGG	1 cut(s)	246
Bst4CI	ACNGT	2 cut(s)	13, 302
BstAPI	GCANNNNNTGC	1 cut(s)	92
BstDEI	CTNAG	1 cut(s)	156
BstMWI	GCNNNNNNNGC	1 cut(s)	92
BstNI	CCWGG	1 cut(s)	246
BstSCI	CCNGG	1 cut(s)	244
BstSFI	CTRYAG	1 cut(s)	76
BstV1I	GCAGC	2 cut(s)	62, 148
BstV2I	GAAGAC	2 cut(s)	72, 221
BsuRI	GGCC	1 cut(s)	244
BtsI	GCAGTG	1 cut(s)	18
BtsIMutI	CAGTG	2 cut(s)	18, 18
Cfr10I	RCCGGY	1 cut(s)	266
Cfr13I	GGNCC	1 cut(s)	278
CpoI	CGGWCCG	1 cut(s)	278
CspAI	ACCGGT	1 cut(s)	266
CspI	CGGWCCG	1 cut(s)	278
CviJI	RGCY	4 cut(s)	75, 146, 161, 244
CviKI_1	RGCY	4 cut(s)	75, 146, 161, 244
DdeI	CTNAG	1 cut(s)	156
Eco147I	AGGCCT	1 cut(s)	244
Eco47I	GGWCC	1 cut(s)	278
Eco57I	CTGAAG	1 cut(s)	10
Eco88I	CYCGRG	1 cut(s)	259
EcoRII	CCWGG	1 cut(s)	244
FaiI	YATR	1 cut(s)	129
FaqI	GGGAC	1 cut(s)	262
FblI	GTMKAC	2 cut(s)	114, 207
Fnu4HI	GCNGC	2 cut(s)	76, 162
Fsp4HI	GCNGC	2 cut(s)	76, 162
FspBI	CTAG	1 cut(s)	62
GluI	GCNGC	2 cut(s)	76, 162
HaeIII	GGCC	1 cut(s)	244
HapII	CCGG	2 cut(s)	267, 276
HinfI	GANTC	2 cut(s)	283, 312
HpaII	CCGG	2 cut(s)	267, 276
Hpy166II	GTNNAC	3 cut(s)	18, 115, 208
Hpy188I	TCNGA	2 cut(s)	198, 229
Hpy188III	TCNNGA	1 cut(s)	62
Hpy8I	GTNNAC	3 cut(s)	18, 115, 208
HpyAV	CCTTC	2 cut(s)	34, 163
HpyCH4III	ACNGT	2 cut(s)	13, 302
HpyCH4V	TGCA	3 cut(s)	78, 86, 164
HpyF10VI	GCNNNNNNNGC	1 cut(s)	92
HpyF3I	CTNAG	1 cut(s)	156
LpnPI	CCDG	4 cut(s)	231, 258, 280, 289
Lsp1109I	GCAGC	2 cut(s)	62, 148
LweI	GCATC	1 cut(s)	82
MaeI	CTAG	1 cut(s)	62
MboII	GAAGA	3 cut(s)	77, 90, 226
MfeI	CAATTG	1 cut(s)	140
MluCI	AATT	2 cut(s)	140, 185
MlyI	GAGTC	1 cut(s)	292
MnlI	CCTC	2 cut(s)	74, 167
MspI	CCGG	2 cut(s)	267, 276
MspR9I	CCNGG	1 cut(s)	246
MunI	CAATTG	1 cut(s)	140
MvaI	CCWGG	1 cut(s)	246
MwoI	GCNNNNNNNGC	1 cut(s)	92
PceI	AGGCCT	1 cut(s)	244
PfeI	GAWTC	1 cut(s)	312
PflFI	GACNNNGTC	1 cut(s)	282
PinAI	ACCGGT	1 cut(s)	266
PkrI	GCNGC	2 cut(s)	77, 163
PleI	GAGTC	1 cut(s)	291
PpsI	GAGTC	1 cut(s)	291
Psp6I	CCWGG	1 cut(s)	244
PspGI	CCWGG	1 cut(s)	244
PspPI	GGNCC	1 cut(s)	278
PstI	CTGCAG	1 cut(s)	80
PsyI	GACNNNGTC	1 cut(s)	282
Rsr2I	CGGWCCG	1 cut(s)	278
RsrII	CGGWCCG	1 cut(s)	278
SatI	GCNGC	2 cut(s)	76, 162
Sau96I	GGNCC	1 cut(s)	278
SchI	GAGTC	1 cut(s)	292
ScrFI	CCNGG	1 cut(s)	246
SetI	ASST	2 cut(s)	77, 85
SfaNI	GCATC	1 cut(s)	82
SfcI	CTRYAG	1 cut(s)	76
SinI	GGWCC	1 cut(s)	278
Sse9I	AATT	2 cut(s)	140, 185
SseBI	AGGCCT	1 cut(s)	244
SspMI	CTAG	1 cut(s)	62
StuI	AGGCCT	1 cut(s)	244
StyD4I	CCNGG	1 cut(s)	244
TaaI	ACNGT	2 cut(s)	13, 302
TaqI	TCGA	1 cut(s)	310
TaqII	GACCGA	1 cut(s)	295
TasI	AATT	2 cut(s)	140, 185
TfiI	GAWTC	1 cut(s)	312
TscAI	CASTG	2 cut(s)	18, 25
TseI	GCWGC	2 cut(s)	75, 161
TspRI	CASTG	2 cut(s)	18, 25
Tth111I	GACNNNGTC	1 cut(s)	282
VpaK11BI	GGWCC	1 cut(s)	278
XbaI	TCTAGA	1 cut(s)	61
XcmI	CCANNNNNNNNNTGG	1 cut(s)	146
XmiI	GTMKAC	2 cut(s)	114, 207
XspI	CTAG	1 cut(s)	62

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.