Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003610.1

Orthogroup ID

OG0014418

Physical Location & Seq

Genomic Coordinates Forward (+)

96687 .. 97814

Gene Structure 1128 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1128 bp

atgaagtctcatattcaagcccttgaagagcgtgcacatgcagcaacaattcaaagcactgtttttggacagctagctgcggaagcactacccaaaagcctccattgtctagatatcaagctcacagctgattggctgaaaaaggcttctatacaagtacttgcagatgagaagaggaactctcccagactcatggataacaatctctaccatttctgcatattttcagataatgtgttggctacctctgctgtcgtaaactctaccgtctccaatgctgaccatccaaaacagctggtcttccacattgtcaccaatggagtcaactatggtacgatgcaggcttggttcctcagtaatgatttcaaaggatccgccatagaggtgcagaatgttgaggagttgtcttggtttaatgcctcttatgcgcctatcgtgaaacagctcctcgatccagattcacgggcctacttttttgggggatatcaagatttgaatgttgataccaagttgcggaaccctaagcatctatctttgctcaatcacctccgcttttacatcccagagatctatccacagctggaaaaggtagtttttcttgatgatgatgttgttgtccagaaggatctgaccccacttttctcattggatttgcatggaaatgtgaatggagcagtggaaacttgtcttgaagcatttcatcgatattataggtatctcaatttctcaaacacaatcatcagctcgaagtttgatccacaggcatgtggatgggcatttggtatgaatgtttttgatttgatcgcttggaggaaagcgaatgcaactgcacggtaccattactggcaggagcagaatgctgatgggactctctggaagttgggcactcttcctcctggccttcttactttttatggtctgacagaaccgcttgataggagatggcatgtattaggactggggtatgatctgaatattgacaaccgtttgattgagagtgcagcggtaatccactataatggctacatgaagccatggctgaagttggccattggcagatacaagcctctttgggaacgatatgtaaatcaaagccacccatatctccaagattgtgtcacaagttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008150 GO:0008152 GO:0008194 GO:0009058 GO:0009987 GO:0010191 GO:0010192 GO:0012505 GO:0016740 GO:0016757 GO:0016758 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044424 GO:0044444 GO:0044464 GO:0047262

KEGG Pathways

Metabolic & Signaling

ko00520 map00520

Pfam Domains

Protein Families

Glyco_transf_8

Protein Analysis

375

Amino Acids

42.94

Weight (kDa)

6.39

Isoelectric Point (pI)

37.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_8	PF01501	73 - 349	4.7e-70	Glycosyl transferase family 8

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014418)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18580
fragaria_vesca	FvH4_5g13450
malus_domestica	MD06G1204900.v1.1 MD14G1216000.v1.1
prunus_persica	Prupe.5G208900_v2.0.a1 Prupe.5G209400_v2.0.a1
pyrus_communis	pycom14g17880
rosa_chinensis	RchiOBHm_Chr7g0183671
rosa_laevigata	RLG00000005034
rosa_multiflora	Rmu_sc0003610.1_g000023
rosa_roxburghii	Rroxscaffold_3G00270340
rosa_rugosa	Rorug06G0459300
rosa_samantha	Rh7AG060000 Rh7BG060100 Rh7CG061700 Rh7DG060100
rosa_wichuraiana	Rw7G004970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	834
AccB1I	GGYRCC	1 cut(s)	834
AciI	CCGC	6 cut(s)	80, 375, 514, 550, 929, 1004
AclWI	GGATC	5 cut(s)	366, 379, 446, 633, 749
AcoI	YGGCCR	1 cut(s)	1047
AcuI	CTGAAG	1 cut(s)	1061
AfaI	GTAC	3 cut(s)	159, 334, 836
AfiI	CCNNNNNNNGG	1 cut(s)	513
AgsI	TTSAA	6 cut(s)	17, 26, 53, 367, 496, 692
AjnI	CCWGG	1 cut(s)	895
AluBI	AGCT	8 cut(s)	73, 77, 121, 128, 295, 445, 580, 744
AluI	AGCT	8 cut(s)	73, 77, 121, 128, 295, 445, 580, 744
Alw21I	GWGCWC	1 cut(s)	37
Alw26I	GTCTC	2 cut(s)	12, 274
Alw44I	GTGCAC	1 cut(s)	33
AlwI	GGATC	5 cut(s)	366, 379, 446, 633, 749
AoxI	GGCC	3 cut(s)	465, 898, 1047
ApaLI	GTGCAC	1 cut(s)	33
ApeKI	GCWGC	3 cut(s)	41, 77, 1001
Asp700I	GAANNNNTTC	1 cut(s)	696
Asp718I	GGTACC	1 cut(s)	834
AspLEI	GCGC	1 cut(s)	430
AspS9I	GGNCC	1 cut(s)	465
AsuHPI	GGTGA	2 cut(s)	304, 536
AsuNHI	GCTAGC	1 cut(s)	73
BaeGI	GKGCMC	2 cut(s)	37, 887
BalI	TGGCCA	1 cut(s)	1049
BamHI	GGATCC	1 cut(s)	371
BanI	GGYRCC	1 cut(s)	834
BbsI	GAAGAC	1 cut(s)	292
Bbv12I	GWGCWC	1 cut(s)	37
BbvI	GCAGC	3 cut(s)	53, 64, 1013
BccI	CCATC	4 cut(s)	291, 765, 857, 936
BciT130I	CCWGG	1 cut(s)	897
BcoDI	GTCTC	2 cut(s)	12, 274
BfaI	CTAG	2 cut(s)	74, 110
BglII	AGATCT	1 cut(s)	567
BisI	GCNGC	3 cut(s)	42, 78, 1002
BlsI	GCNGC	3 cut(s)	43, 79, 1003
BmcAI	AGTACT	1 cut(s)	159
Bme1390I	CCNGG	1 cut(s)	897
BmgT120I	GGNCC	1 cut(s)	465
BmiI	GGNNCC	4 cut(s)	350, 373, 518, 836
BmrFI	CCNGG	1 cut(s)	897
BmrI	ACTGGG	1 cut(s)	968
BmsI	GCATC	2 cut(s)	327, 535
BmtI	GCTAGC	1 cut(s)	77
BmuI	ACTGGG	1 cut(s)	968
BpiI	GAAGAC	1 cut(s)	292
BplI	GAGNNNNNCTC	2 cut(s)	166, 198
Bpu10I	CCTNAGC	1 cut(s)	522
Bsa29I	ATCGAT	1 cut(s)	703
BsaBI	GATNNNNATC	1 cut(s)	201
BsaJI	CCNNGG	1 cut(s)	1034
BsaXI	ACNNNNNCTCC	2 cut(s)	877, 907
Bsc4I	CCNNNNNNNGG	1 cut(s)	513
Bse1I	ACTGG	2 cut(s)	848, 963
Bse8I	GATNNNNATC	1 cut(s)	201
BseBI	CCWGG	1 cut(s)	897
BseCI	ATCGAT	1 cut(s)	703
BseDI	CCNNGG	1 cut(s)	1034
BseGI	GGATG	3 cut(s)	283, 558, 776
BseJI	GATNNNNATC	1 cut(s)	201
BseLI	CCNNNNNNNGG	1 cut(s)	513
BseMII	CTCAG	1 cut(s)	367
BseNI	ACTGG	2 cut(s)	848, 963
BseRI	GAGGAG	2 cut(s)	413, 437
BseSI	GKGCMC	2 cut(s)	37, 887
BseXI	GCAGC	3 cut(s)	53, 64, 1013
BsgI	GTGCAG	3 cut(s)	407, 813, 1020
BshFI	GGCC	3 cut(s)	467, 900, 1049
BshNI	GGYRCC	1 cut(s)	834
BshVI	ATCGAT	1 cut(s)	703
BsiHKAI	GWGCWC	1 cut(s)	37
BslFI	GGGAC	1 cut(s)	880
BslI	CCNNNNNNNGG	1 cut(s)	513
BsmAI	GTCTC	2 cut(s)	12, 274
BsmBI	CGTCTC	1 cut(s)	274
BsmFI	GGGAC	1 cut(s)	880
BsmI	GAATGC	2 cut(s)	826, 862
BsnI	GGCC	3 cut(s)	467, 900, 1049
Bsp1286I	GDGCHC	2 cut(s)	37, 887
Bsp143I	GATC	7 cut(s)	371, 451, 567, 625, 754, 801, 967
Bsp19I	CCATGG	1 cut(s)	1034
BspACI	CCGC	6 cut(s)	80, 375, 514, 550, 929, 1004
BspANI	GGCC	3 cut(s)	467, 900, 1049
BspCNI	CTCAG	1 cut(s)	366
BspDI	ATCGAT	1 cut(s)	703
BspLI	GGNNCC	4 cut(s)	350, 373, 518, 836
BspOI	GCTAGC	1 cut(s)	77
BspPI	GGATC	5 cut(s)	366, 379, 446, 633, 749
BspQI	GCTCTTC	1 cut(s)	21
BspT107I	GGYRCC	1 cut(s)	834
BsrI	ACTGG	2 cut(s)	848, 963
BssECI	CCNNGG	1 cut(s)	1034
BssMI	GATC	7 cut(s)	371, 451, 567, 625, 754, 801, 967
BssT1I	CCWWGG	1 cut(s)	1034
Bst2UI	CCWGG	1 cut(s)	897
Bst4CI	ACNGT	4 cut(s)	61, 268, 834, 986
Bst6I	CTCTTC	3 cut(s)	21, 167, 894
BstC8I	GCNNGC	3 cut(s)	33, 75, 342
BstDEI	CTNAG	2 cut(s)	353, 522
BstDSI	CCRYGG	1 cut(s)	1034
BstF5I	GGATG	3 cut(s)	283, 558, 776
BstHHI	GCGC	1 cut(s)	430
BstKTI	GATC	7 cut(s)	374, 454, 570, 628, 757, 804, 970
BstMAI	GTCTC	2 cut(s)	12, 274
BstMBI	GATC	7 cut(s)	371, 451, 567, 625, 754, 801, 967
BstMWI	GCNNNNNNNGC	4 cut(s)	41, 83, 248, 425
BstNI	CCWGG	1 cut(s)	897
BstNSI	RCATGY	3 cut(s)	41, 768, 950
BstSCI	CCNGG	1 cut(s)	895
BstSLI	GKGCMC	2 cut(s)	37, 887
BstV1I	GCAGC	3 cut(s)	53, 64, 1013
BstV2I	GAAGAC	1 cut(s)	292
BstX2I	RGATCY	3 cut(s)	371, 567, 625
BstXI	CCANNNNNNTGG	2 cut(s)	193, 1019
BstYI	RGATCY	3 cut(s)	371, 567, 625
Bsu15I	ATCGAT	1 cut(s)	703
BsuRI	GGCC	3 cut(s)	467, 900, 1049
BsuTUI	ATCGAT	1 cut(s)	703
BtgI	CCRYGG	1 cut(s)	1034
BtsCI	GGATG	3 cut(s)	283, 558, 776
BtsI	GCAGTG	1 cut(s)	681
BtsIMutI	CAGTG	2 cut(s)	57, 681
Cac8I	GCNNGC	3 cut(s)	33, 75, 342
CfoI	GCGC	1 cut(s)	430
Cfr13I	GGNCC	1 cut(s)	465
ClaI	ATCGAT	1 cut(s)	703
Csp6I	GTAC	3 cut(s)	158, 333, 835
CviAII	CATG	7 cut(s)	38, 193, 656, 765, 947, 1027, 1035
CviQI	GTAC	3 cut(s)	158, 333, 835
DdeI	CTNAG	2 cut(s)	353, 522
DpnI	GATC	7 cut(s)	373, 453, 569, 627, 756, 803, 969
DpnII	GATC	7 cut(s)	371, 451, 567, 625, 754, 801, 967
EaeI	YGGCCR	1 cut(s)	1047
Eam1104I	CTCTTC	3 cut(s)	21, 167, 894
EarI	CTCTTC	3 cut(s)	21, 167, 894
EciI	GGCGGA	1 cut(s)	364
Eco130I	CCWWGG	1 cut(s)	1034
Eco32I	GATATC	2 cut(s)	115, 485
Eco57I	CTGAAG	1 cut(s)	1061
EcoRII	CCWGG	1 cut(s)	895
EcoRV	GATATC	2 cut(s)	115, 485
EcoT14I	CCWWGG	1 cut(s)	1034
ErhI	CCWWGG	1 cut(s)	1034
Esp3I	CGTCTC	1 cut(s)	274
FaeI	CATG	7 cut(s)	41, 196, 659, 768, 950, 1030, 1038
FaqI	GGGAC	1 cut(s)	880
FatI	CATG	7 cut(s)	37, 192, 655, 764, 946, 1026, 1034
Fnu4HI	GCNGC	3 cut(s)	42, 78, 1002
FokI	GGATG	3 cut(s)	270, 545, 783
Fsp4HI	GCNGC	3 cut(s)	42, 78, 1002
FspBI	CTAG	2 cut(s)	74, 110
GlaI	GCGC	1 cut(s)	429
GluI	GCNGC	3 cut(s)	42, 78, 1002
HaeIII	GGCC	3 cut(s)	467, 900, 1049
HhaI	GCGC	1 cut(s)	430
Hin1II	CATG	7 cut(s)	41, 196, 659, 768, 950, 1030, 1038
Hin6I	GCGC	1 cut(s)	428
HinP1I	GCGC	1 cut(s)	428
HincII	GTYRAC	1 cut(s)	325
HindII	GTYRAC	1 cut(s)	325
HinfI	GANTC	4 cut(s)	189, 321, 458, 868
HphI	GGTGA	2 cut(s)	304, 536
Hpy166II	GTNNAC	3 cut(s)	35, 259, 325
Hpy188I	TCNGA	4 cut(s)	229, 630, 921, 972
Hpy188III	TCNNGA	8 cut(s)	110, 436, 455, 488, 599, 619, 689, 874
Hpy8I	GTNNAC	3 cut(s)	35, 259, 325
HpyAV	CCTTC	2 cut(s)	616, 911
HpyCH4III	ACNGT	4 cut(s)	61, 268, 834, 986
HpyF10VI	GCNNNNNNNGC	4 cut(s)	41, 83, 248, 425
HpyF3I	CTNAG	2 cut(s)	353, 522
Hsp92II	CATG	7 cut(s)	41, 196, 659, 768, 950, 1030, 1038
HspAI	GCGC	1 cut(s)	428
KpnI	GGTACC	1 cut(s)	838
Kzo9I	GATC	7 cut(s)	371, 451, 567, 625, 754, 801, 967
LguI	GCTCTTC	1 cut(s)	21
LmnI	GCTCC	3 cut(s)	450, 671, 850
Lsp1109I	GCAGC	3 cut(s)	53, 64, 1013
LweI	GCATC	2 cut(s)	327, 535
MaeI	CTAG	2 cut(s)	74, 110
MaeIII	GTNAC	2 cut(s)	310, 1117
MalI	GATC	7 cut(s)	373, 453, 569, 627, 756, 803, 969
MboI	GATC	7 cut(s)	371, 451, 567, 625, 754, 801, 967
MboII	GAAGA	4 cut(s)	38, 184, 292, 881
MflI	RGATCY	3 cut(s)	371, 567, 625
MhlI	GDGCHC	2 cut(s)	37, 887
MlsI	TGGCCA	1 cut(s)	1049
MluCI	AATT	2 cut(s)	48, 721
MluNI	TGGCCA	1 cut(s)	1049
MlyI	GAGTC	3 cut(s)	183, 330, 862
Mox20I	TGGCCA	1 cut(s)	1049
MroXI	GAANNNNTTC	1 cut(s)	696
MscI	TGGCCA	1 cut(s)	1049
MseI	TTAA	2 cut(s)	414, 1126
MslI	CAYNNNNRTG	5 cut(s)	383, 660, 763, 769, 1017
Msp20I	TGGCCA	1 cut(s)	1049
MspA1I	CMGCKG	4 cut(s)	128, 295, 580, 1004
MspR9I	CCNGG	1 cut(s)	897
Mva1269I	GAATGC	2 cut(s)	826, 862
MvaI	CCWGG	1 cut(s)	897
MwoI	GCNNNNNNNGC	4 cut(s)	41, 83, 248, 425
NcoI	CCATGG	1 cut(s)	1034
NdeII	GATC	7 cut(s)	371, 451, 567, 625, 754, 801, 967
NheI	GCTAGC	1 cut(s)	73
NlaIII	CATG	7 cut(s)	41, 196, 659, 768, 950, 1030, 1038
NlaIV	GGNNCC	4 cut(s)	350, 373, 518, 836
NmuCI	GTSAC	2 cut(s)	310, 1117
NspI	RCATGY	3 cut(s)	41, 768, 950
PciSI	GCTCTTC	1 cut(s)	21
PctI	GAATGC	2 cut(s)	826, 862
PdmI	GAANNNNTTC	1 cut(s)	696
PfeI	GAWTC	1 cut(s)	458
PkrI	GCNGC	3 cut(s)	43, 79, 1003
PleI	GAGTC	3 cut(s)	183, 329, 862
PpsI	GAGTC	3 cut(s)	183, 329, 862
Psp6I	CCWGG	1 cut(s)	895
PspGI	CCWGG	1 cut(s)	895
PspN4I	GGNNCC	4 cut(s)	350, 373, 518, 836
PspPI	GGNCC	1 cut(s)	465
PsuI	RGATCY	3 cut(s)	371, 567, 625
PvuII	CAGCTG	3 cut(s)	128, 295, 580
RsaI	GTAC	3 cut(s)	159, 334, 836
RsaNI	GTAC	3 cut(s)	158, 333, 835
RseI	CAYNNNNRTG	5 cut(s)	383, 660, 763, 769, 1017
SapI	GCTCTTC	1 cut(s)	21
SaqAI	TTAA	2 cut(s)	414, 1126
SatI	GCNGC	3 cut(s)	42, 78, 1002
Sau3AI	GATC	7 cut(s)	371, 451, 567, 625, 754, 801, 967
Sau96I	GGNCC	1 cut(s)	465
ScaI	AGTACT	1 cut(s)	159
SchI	GAGTC	3 cut(s)	183, 330, 862
ScrFI	CCNGG	1 cut(s)	897
SduI	GDGCHC	2 cut(s)	37, 887
SfaNI	GCATC	2 cut(s)	327, 535
SmiMI	CAYNNNNRTG	5 cut(s)	383, 660, 763, 769, 1017
Sse9I	AATT	2 cut(s)	48, 721
SsiI	CCGC	6 cut(s)	80, 375, 514, 550, 929, 1004
SspI	AATATT	1 cut(s)	976
SspMI	CTAG	2 cut(s)	74, 110
StyD4I	CCNGG	1 cut(s)	895
StyI	CCWWGG	1 cut(s)	1034
TaaI	ACNGT	4 cut(s)	61, 268, 834, 986
TaqI	TCGA	3 cut(s)	450, 703, 746
TasI	AATT	2 cut(s)	48, 721
TatI	WGTACW	1 cut(s)	157
TfiI	GAWTC	1 cut(s)	458
Tru1I	TTAA	2 cut(s)	414, 1126
Tru9I	TTAA	2 cut(s)	414, 1126
TscAI	CASTG	2 cut(s)	64, 681
TseFI	GTSAC	2 cut(s)	310, 1117
TseI	GCWGC	3 cut(s)	41, 77, 1001
Tsp45I	GTSAC	2 cut(s)	310, 1117
TspDTI	ATGAA	4 cut(s)	17, 689, 800, 1043
TspRI	CASTG	2 cut(s)	64, 681
VneI	GTGCAC	1 cut(s)	33
XbaI	TCTAGA	1 cut(s)	109
XceI	RCATGY	3 cut(s)	41, 768, 950
XmnI	GAANNNNTTC	1 cut(s)	696
XspI	CTAG	2 cut(s)	74, 110
ZrmI	AGTACT	1 cut(s)	159

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.