Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003652.1

Orthogroup ID

OG0017998

Physical Location & Seq

Genomic Coordinates Reverse (-)

6249 .. 6644

Gene Structure 396 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

atggagctgaagcttccgatgcttgcacttgtggacagcagtccagacggggttaagattatttcgactgtgtctcaatgttgtgggtgcaatgtcgattggcttgggatattaccaagcgaattggataagggtatgtttgccatagccaacgaccctatgatcagaatccccatgactgacagtgatttgaagacattggaagatctgatggagaataacgactttgtgaaggagaagatgaggaatccaaaatgtttggaggaaccgactctgatggagaatgatgatttgattgagaaggtgaagaatctggagctgagtaatctgatggggaatgacttttcaaaggagaataggaagaatccaacatatttttttattttttataattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000280 GO:0000706 GO:0000729 GO:0001708 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0003916 GO:0003918 GO:0004518 GO:0004519 GO:0004520 GO:0004536 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007127 GO:0007131 GO:0008094 GO:0008150 GO:0008152 GO:0008544 GO:0009888 GO:0009913 GO:0009957 GO:0009987 GO:0016043 GO:0016462 GO:0016787 GO:0016788 GO:0016817 GO:0016818 GO:0016853 GO:0016887 GO:0016889 GO:0016894 GO:0017111 GO:0022402 GO:0022414 GO:0030154 GO:0030855 GO:0031974 GO:0031981 GO:0032502 GO:0033554 GO:0034641 GO:0035825 GO:0042138 GO:0042623 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045165 GO:0046483 GO:0048285 GO:0048856 GO:0048869 GO:0050896 GO:0051321 GO:0051716 GO:0060429 GO:0061505 GO:0061982 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0097159 GO:0140013 GO:0140097 GO:1901360 GO:1901363 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko04113 map04113

Pfam Domains

Protein Families

TP6A_N

Protein Analysis

131

Amino Acids

14.97

Weight (kDa)

4.45

Isoelectric Point (pI)

29.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TOP6A-Spo11_Toprim	PF21180	2 - 84	1.4e-06	Topoisomerase 6 subunit A/Spo11, Toprim domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0017998)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g06051 FvH4_4g12771
rosa_laevigata	RLG00000003317 RLG00000003318
rosa_multiflora	Rmu_sc0003652.1_g000002 Rmu_sc0005065.1_g000016
rosa_roxburghii	Rroxscaffold_3G00251590
rosa_samantha	Rh7AG228500 Rh7BG224900 Rh7CG243100 Rh7CG243200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	390
AcuI	CTGAAG	1 cut(s)	29
AgsI	TTSAA	2 cut(s)	193, 348
AluBI	AGCT	3 cut(s)	7, 13, 319
AluI	AGCT	3 cut(s)	7, 13, 319
Alw26I	GTCTC	1 cut(s)	78
AsuHPI	GGTGA	1 cut(s)	316
BbsI	GAAGAC	1 cut(s)	200
BccI	CCATC	3 cut(s)	205, 271, 325
BclI	TGATCA	1 cut(s)	162
BcoDI	GTCTC	1 cut(s)	78
BglII	AGATCT	1 cut(s)	205
BmiI	GGNNCC	1 cut(s)	267
BmsI	GCATC	1 cut(s)	9
BoxI	GACNNNNGTC	1 cut(s)	39
BpiI	GAAGAC	1 cut(s)	200
BpmI	CTGGAG	1 cut(s)	335
BsaBI	GATNNNNATC	1 cut(s)	167
Bse3DI	GCAATG	1 cut(s)	97
Bse8I	GATNNNNATC	1 cut(s)	167
BseJI	GATNNNNATC	1 cut(s)	167
BseMI	GCAATG	1 cut(s)	97
BseMII	CTCAG	1 cut(s)	311
BsmAI	GTCTC	1 cut(s)	78
Bsp143I	GATC	2 cut(s)	162, 205
BspCNI	CTCAG	1 cut(s)	312
BspLI	GGNNCC	1 cut(s)	267
BsrDI	GCAATG	1 cut(s)	97
BssMI	GATC	2 cut(s)	162, 205
Bst4CI	ACNGT	2 cut(s)	70, 185
BstC8I	GCNNGC	1 cut(s)	24
BstDEI	CTNAG	1 cut(s)	320
BstKTI	GATC	2 cut(s)	165, 208
BstMAI	GTCTC	1 cut(s)	78
BstMBI	GATC	2 cut(s)	162, 205
BstMWI	GCNNNNNNNGC	1 cut(s)	19
BstPAI	GACNNNNGTC	1 cut(s)	39
BstV2I	GAAGAC	1 cut(s)	200
BstX2I	RGATCY	1 cut(s)	205
BstYI	RGATCY	1 cut(s)	205
BtsIMutI	CAGTG	1 cut(s)	190
Cac8I	GCNNGC	1 cut(s)	24
CviAII	CATG	1 cut(s)	175
CviJI	RGCY	5 cut(s)	7, 13, 103, 149, 319
CviKI_1	RGCY	5 cut(s)	7, 13, 103, 149, 319
DdeI	CTNAG	1 cut(s)	320
DpnI	GATC	2 cut(s)	164, 207
DpnII	GATC	2 cut(s)	162, 205
Eco57I	CTGAAG	1 cut(s)	29
FaeI	CATG	1 cut(s)	178
FaiI	YATR	6 cut(s)	137, 146, 161, 176, 373, 390
FatI	CATG	1 cut(s)	174
FbaI	TGATCA	1 cut(s)	162
GsuI	CTGGAG	1 cut(s)	335
Hin1II	CATG	1 cut(s)	178
HindIII	AAGCTT	1 cut(s)	11
HinfI	GANTC	5 cut(s)	168, 247, 271, 310, 364
HphI	GGTGA	1 cut(s)	316
Hpy166II	GTNNAC	1 cut(s)	34
Hpy188I	TCNGA	5 cut(s)	18, 167, 210, 276, 330
Hpy188III	TCNNGA	2 cut(s)	44, 314
Hpy8I	GTNNAC	1 cut(s)	34
HpyAV	CCTTC	2 cut(s)	226, 295
HpyCH4III	ACNGT	2 cut(s)	70, 185
HpyCH4V	TGCA	2 cut(s)	26, 90
HpyF10VI	GCNNNNNNNGC	1 cut(s)	19
HpyF3I	CTNAG	1 cut(s)	320
Hsp92II	CATG	1 cut(s)	178
Ksp22I	TGATCA	1 cut(s)	162
Kzo9I	GATC	2 cut(s)	162, 205
LmnI	GCTCC	2 cut(s)	4, 316
LpnPI	CCDG	2 cut(s)	57, 299
LweI	GCATC	1 cut(s)	9
MalI	GATC	2 cut(s)	164, 207
MboI	GATC	2 cut(s)	162, 205
MboII	GAAGA	5 cut(s)	205, 215, 250, 319, 373
MflI	RGATCY	1 cut(s)	205
MluCI	AATT	2 cut(s)	122, 391
MlyI	GAGTC	1 cut(s)	265
MmeI	TCCRAC	1 cut(s)	392
MnlI	CCTC	2 cut(s)	237, 256
MseI	TTAA	2 cut(s)	54, 394
MwoI	GCNNNNNNNGC	1 cut(s)	19
NdeII	GATC	2 cut(s)	162, 205
NlaIII	CATG	1 cut(s)	178
NlaIV	GGNNCC	1 cut(s)	267
PfeI	GAWTC	4 cut(s)	168, 247, 310, 364
PflFI	GACNNNGTC	1 cut(s)	70
PleI	GAGTC	1 cut(s)	265
PpsI	GAGTC	1 cut(s)	265
PshAI	GACNNNNGTC	1 cut(s)	39
PsiI	TTATAA	1 cut(s)	390
PspN4I	GGNNCC	1 cut(s)	267
PsuI	RGATCY	1 cut(s)	205
PsyI	GACNNNGTC	1 cut(s)	70
SaqAI	TTAA	2 cut(s)	54, 394
Sau3AI	GATC	2 cut(s)	162, 205
SchI	GAGTC	1 cut(s)	265
SetI	ASST	4 cut(s)	9, 15, 306, 321
SfaNI	GCATC	1 cut(s)	9
SgeI	CNNG	8 cut(s)	35, 41, 56, 61, 116, 129, 187, 326
Sse9I	AATT	2 cut(s)	122, 391
TaaI	ACNGT	2 cut(s)	70, 185
TaqI	TCGA	2 cut(s)	65, 96
TasI	AATT	2 cut(s)	122, 391
TfiI	GAWTC	4 cut(s)	168, 247, 310, 364
Tru1I	TTAA	2 cut(s)	54, 394
Tru9I	TTAA	2 cut(s)	54, 394
TscAI	CASTG	1 cut(s)	190
TspRI	CASTG	1 cut(s)	190
Tth111I	GACNNNGTC	1 cut(s)	70

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.