Rmu_sc0003722.1_g000013

UPF0496 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003722.1
OG0021527
Physical Location & Seq
Forward (+)
75477 .. 76105
629 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 504 bp
atgagttcccatgagttgatgacttccaggtcgaaccgaaagggcttcgggtctttcagattactggccctcgccattactgcctcagttgtactgcgtggaagaggccttccgccacaccgaatccaactcccttactattctcatctccgactactttcaccacagcgaggacgccacccatctatgtctgctcctctaccacagcgtctatcaagaaagtcacgaccgccactagagccctttcccttccccgactcccacaacatcaatgacacacaccgcatcttcaacgacctcaagcagcagctcaatcactacctccgctcctcatcctccaaaattcgcaaagcccatgttgcatccattatatgcctcattcgaactgctgttggagtagtcgcttatgccgccaagactgaaggaaaagcaataggcattgacctcggcacctctttctccttcttcaccaactcaatcttcctcacttttgtttatatttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF677

Protein Analysis

167

Amino Acids

18.77

Weight (kDa)

11.29

Isoelectric Point (pI)

60.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021527)

Species Orthologous Gene IDs
rosa_laevigata RLG00000007981
rosa_multiflora Rmu_sc0003722.1_g000013 Rmu_sc0005277.1_g000017
rosa_roxburghii Rroxscaffold_1G00071120
rosa_samantha Rh4BG202000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 28
AccB1I GGYRCC 1 cut(s) 449
AccBSI CCGCTC 1 cut(s) 327
AciI CCGC 5 cut(s) 113, 230, 283, 325, 411
AcsI RAATTY 1 cut(s) 342
AcuI CTGAAG 1 cut(s) 441
AcyI GRCGYC 1 cut(s) 175
AfaI GTAC 1 cut(s) 93
AfiI CCNNNNNNNGG 1 cut(s) 170
AgsI TTSAA 1 cut(s) 292
AjnI CCWGG 1 cut(s) 26
AjuI GAANNNNNNNTTGG 2 cut(s) 464, 496
AluBI AGCT 1 cut(s) 310
AluI AGCT 1 cut(s) 310
AoxI GGCC 2 cut(s) 66, 106
ApeKI GCWGC 2 cut(s) 304, 307
ApoI RAATTY 1 cut(s) 342
AspS9I GGNCC 1 cut(s) 67
AsuHPI GGTGA 2 cut(s) 153, 460
AsuII TTCGAA 1 cut(s) 382
BanI GGYRCC 1 cut(s) 449
BanII GRGCYC 1 cut(s) 243
BbvI GCAGC 2 cut(s) 316, 319
BccI CCATC 1 cut(s) 190
BcgI CGANNNNNNTGC 2 cut(s) 427, 461
BciT130I CCWGG 1 cut(s) 28
BfaI CTAG 1 cut(s) 236
BisI GCNGC 3 cut(s) 305, 308, 411
BlsI GCNGC 3 cut(s) 306, 309, 412
Bme1390I CCNGG 1 cut(s) 28
BmgT120I GGNCC 1 cut(s) 67
BmiI GGNNCC 1 cut(s) 451
BmrFI CCNGG 1 cut(s) 28
BmsI GCATC 2 cut(s) 294, 371
Bpu14I TTCGAA 1 cut(s) 382
BpuEI CTTGAG 1 cut(s) 284
BsaHI GRCGYC 1 cut(s) 175
BsaJI CCNNGG 1 cut(s) 445
BsaXI ACNNNNNCTCC 2 cut(s) 311, 341
Bsc4I CCNNNNNNNGG 1 cut(s) 170
Bse1I ACTGG 1 cut(s) 69
BseBI CCWGG 1 cut(s) 28
BseDI CCNNGG 1 cut(s) 445
BseGI GGATG 2 cut(s) 332, 362
BseLI CCNNNNNNNGG 1 cut(s) 170
BseMII CTCAG 1 cut(s) 99
BseNI ACTGG 1 cut(s) 69
BseRI GAGGAG 2 cut(s) 186, 319
BseXI GCAGC 2 cut(s) 316, 319
Bsh1285I CGRYCG 1 cut(s) 230
BshFI GGCC 2 cut(s) 68, 108
BshNI GGYRCC 1 cut(s) 449
BsiEI CGRYCG 1 cut(s) 230
BslI CCNNNNNNNGG 1 cut(s) 170
BsnI GGCC 2 cut(s) 68, 108
Bsp119I TTCGAA 1 cut(s) 382
Bsp1286I GDGCHC 1 cut(s) 243
BspACI CCGC 5 cut(s) 113, 230, 283, 325, 411
BspANI GGCC 2 cut(s) 68, 108
BspCNI CTCAG 1 cut(s) 98
BspLI GGNNCC 1 cut(s) 451
BspT104I TTCGAA 1 cut(s) 382
BspT107I GGYRCC 1 cut(s) 449
BsrBI CCGCTC 1 cut(s) 327
BsrI ACTGG 1 cut(s) 69
BssECI CCNNGG 1 cut(s) 445
BssNI GRCGYC 1 cut(s) 175
Bst2UI CCWGG 1 cut(s) 28
Bst6I CTCTTC 1 cut(s) 97
BstACI GRCGYC 1 cut(s) 175
BstBI TTCGAA 1 cut(s) 382
BstDEI CTNAG 1 cut(s) 85
BstF5I GGATG 2 cut(s) 332, 362
BstMCI CGRYCG 1 cut(s) 230
BstMWI GCNNNNNNNGC 4 cut(s) 80, 238, 359, 410
BstNI CCWGG 1 cut(s) 28
BstSCI CCNGG 1 cut(s) 26
BstV1I GCAGC 2 cut(s) 316, 319
BsuRI GGCC 2 cut(s) 68, 108
BtsCI GGATG 2 cut(s) 332, 362
Cfr13I GGNCC 1 cut(s) 67
CseI GACGC 2 cut(s) 183, 197
Csp6I GTAC 1 cut(s) 92
CviAII CATG 2 cut(s) 11, 356
CviJI RGCY 6 cut(s) 45, 68, 108, 241, 310, 353
CviKI_1 RGCY 6 cut(s) 45, 68, 108, 241, 310, 353
CviQI GTAC 1 cut(s) 92
DdeI CTNAG 1 cut(s) 85
DrdI GACNNNNNNGTC 1 cut(s) 28
DseDI GACNNNNNNGTC 1 cut(s) 28
Eam1104I CTCTTC 1 cut(s) 97
EarI CTCTTC 1 cut(s) 97
EciI GGCGGA 1 cut(s) 102
Eco147I AGGCCT 1 cut(s) 108
Eco24I GRGCYC 1 cut(s) 243
Eco57I CTGAAG 1 cut(s) 441
EcoRII CCWGG 1 cut(s) 26
EcoT38I GRGCYC 1 cut(s) 243
FaeI CATG 2 cut(s) 14, 359
FaiI YATR 7 cut(s) 12, 188, 357, 371, 373, 408, 498
FatI CATG 2 cut(s) 10, 355
Fnu4HI GCNGC 3 cut(s) 305, 308, 411
FokI GGATG 2 cut(s) 319, 349
FriOI GRGCYC 1 cut(s) 243
Fsp4HI GCNGC 3 cut(s) 305, 308, 411
FspBI CTAG 1 cut(s) 236
GluI GCNGC 3 cut(s) 305, 308, 411
HaeIII GGCC 2 cut(s) 68, 108
HgaI GACGC 2 cut(s) 183, 197
Hin1I GRCGYC 1 cut(s) 175
Hin1II CATG 2 cut(s) 14, 359
HinfI GANTC 2 cut(s) 123, 257
HphI GGTGA 2 cut(s) 153, 460
Hpy188I TCNGA 2 cut(s) 59, 152
Hpy188III TCNNGA 2 cut(s) 216, 225
HpyAV CCTTC 4 cut(s) 119, 259, 416, 472
HpyCH4V TGCA 1 cut(s) 362
HpyF10VI GCNNNNNNNGC 4 cut(s) 80, 238, 359, 410
HpyF3I CTNAG 1 cut(s) 85
Hsp92I GRCGYC 1 cut(s) 175
Hsp92II CATG 2 cut(s) 14, 359
LmnI GCTCC 2 cut(s) 199, 332
LpnPI CCDG 3 cut(s) 13, 40, 50
Lsp1109I GCAGC 2 cut(s) 316, 319
LweI GCATC 2 cut(s) 294, 371
MaeI CTAG 1 cut(s) 236
MaeIII GTNAC 1 cut(s) 222
MbiI CCGCTC 1 cut(s) 327
MboII GAAGA 4 cut(s) 114, 280, 457, 472
MhlI GDGCHC 1 cut(s) 243
MluCI AATT 1 cut(s) 342
MlyI GAGTC 1 cut(s) 251
MmeI TCCRAC 3 cut(s) 151, 175, 373
MspR9I CCNGG 1 cut(s) 28
MvaI CCWGG 1 cut(s) 28
MwoI GCNNNNNNNGC 4 cut(s) 80, 238, 359, 410
NlaIII CATG 2 cut(s) 14, 359
NlaIV GGNNCC 1 cut(s) 451
NmeAIII GCCGAG 1 cut(s) 426
NmuCI GTSAC 1 cut(s) 222
NspV TTCGAA 1 cut(s) 382
PceI AGGCCT 1 cut(s) 108
PfeI GAWTC 1 cut(s) 123
PkrI GCNGC 3 cut(s) 306, 309, 412
PleI GAGTC 1 cut(s) 251
PpsI GAGTC 1 cut(s) 251
Psp6I CCWGG 1 cut(s) 26
PspGI CCWGG 1 cut(s) 26
PspN4I GGNNCC 1 cut(s) 451
PspPI GGNCC 1 cut(s) 67
RsaI GTAC 1 cut(s) 93
RsaNI GTAC 1 cut(s) 92
SatI GCNGC 3 cut(s) 305, 308, 411
Sau96I GGNCC 1 cut(s) 67
SchI GAGTC 1 cut(s) 251
ScrFI CCNGG 1 cut(s) 28
SduI GDGCHC 1 cut(s) 243
SetI ASST 6 cut(s) 32, 300, 312, 324, 447, 455
SfaNI GCATC 2 cut(s) 294, 371
SfuI TTCGAA 1 cut(s) 382
SmlI CTYRAG 1 cut(s) 299
SmoI CTYRAG 1 cut(s) 299
Sse9I AATT 1 cut(s) 342
SseBI AGGCCT 1 cut(s) 108
SsiI CCGC 5 cut(s) 113, 230, 283, 325, 411
SspMI CTAG 1 cut(s) 236
StuI AGGCCT 1 cut(s) 108
StyD4I CCNGG 1 cut(s) 26
TaqI TCGA 2 cut(s) 32, 382
TasI AATT 1 cut(s) 342
TatI WGTACW 1 cut(s) 91
TauI GCSGC 1 cut(s) 413
TfiI GAWTC 1 cut(s) 123
TseFI GTSAC 1 cut(s) 222
TseI GCWGC 2 cut(s) 304, 307
Tsp45I GTSAC 1 cut(s) 222
XapI RAATTY 1 cut(s) 342
XspI CTAG 1 cut(s) 236
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.