Rmu_sc0003722.1_g000050

Plant lipoxygenase may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003722.1
Physical Location & Seq
Reverse (-)
227900 .. 236062
8163 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003722.1_g000050.1.cds

Sequence Viewer

Length: 1974 bp
atgggtttctgctcaagttccacagtagcacgggatgtgatggatacagtttgtctgaagaagagcaatgagaagccaaaaaatcagaaggtgagtgagagcaagaagataagaggaacagtggtgttgatgaagaagaacgtgttggacttcaacgacatgaaggcatcgctttttgatcgaatccatgagtttctgggcaagggtgtttccatgcagctcatcagtgctactcaacctgagcctgcagaaaatgggttgatgtcgagggggaagattggaaagatagcttacttggagaactggattacaacccttacagccttgactgctggagatactgctttcaccgtttcaattgactgggatgagtcaatgggagttcctggggctttgatgatcagaaaccatcaccatagccagttttacctcaagacaattacattagatgatgttcctggacacggtcgagtccattttgtctgcaattcctgggtttaccctgcacatcgttacaagtataatcggatatttttctccaacaaggcctacctgccatctcaaacacctgagctgttactcccttacagggaagaagagctgagtaatctccgtggaagtggatcgggcgagctaaaggagtgggacagagtctatgactatgcttactacaatgatttggggagtccagacaagggtccagaatatgcacgccctgttcttggtggatcacaagagtatccctatccaagaagaggaagaactggtcgaaaaccaactaaaactgaccccaactctgaaagcaggctgtttcttctaagtctagacatctatgttccaagagatgagcgctttggccacgttaagttttcagattttcttgcatatgccctaaaatccctggttcagatattgctcccagagcttagatcgctgtgtgataaaactatcgatgagtttgacacgtttgaggatgtacttgatctctatgaaggaggcatcaagctaccaaatgggcctacactcaaaaaattaagggatcgtgtcccttgggagcttctcagggaactacttcgctcagatggcgagcgatttctcaagttcccaatgcctgatgtgattaaagaaaatgggttgatgtcgagggggaagattggaaagatagcttacttggagaactggattacaacccttacagccttgactgctggagatactgctttcaccgtttcaattgactgggatgagtcaatgggagttcctggggctttgatgatcagaaaccatcaccatagccaattttacctcaagacaattacattagatgatgttcctggacacgtcatggtcaagtatagaatgactagcatatgtatcatatctgctttcaccgtttcaattgactgggatgagtcaatgggagttcctggggctttgatgatcagaaaccatcaccatagccagttttacctcaagacaattacattagatgatgttcctggacacgaaaacagaagcaacaagaacacactgaaaagaatcaatgctggaggggtgcttgagaagacagtcttcccagctcaatatgccatggaaatgtctgccgttatttataaaaactgggtattcaccgagcaagcactacctgctgacttgctcaagaggggaatggcaatttcggacccaagtagccctcatggcctcagacttctgatagaagatgaaaatggcgtaaaacctccgtacgcatccacctacaacctgttgcagtcctgcagcttcaccgcagccttaccacaacttcaccgtagccaccgcagcgccaagtccctgctgcttctcgacttctgccgcaagcctcaccaccctgcccagcccagttgctgccccccgcgctgcagcccacagtcctgcagccttgcccagcgcgcccgtgcgcctgccatcctagcacgactccctcgcagcagctag

Protein Analysis

657

Amino Acids

74.17

Weight (kDa)

8.79

Isoelectric Point (pI)

41.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0020318)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g15250 FvH4_4g15250 FvH4_4g15250
rosa_multiflora Rmu_sc0003722.1_g000050
rosa_samantha Rh4AG205600 Rh4DG202600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1614
Acc36I ACCTGC 2 cut(s) 561, 1654
AccII CGCG 2 cut(s) 1894, 1929
AciI CCGC 4 cut(s) 1785, 1816, 1852, 1892
AclWI GGATC 3 cut(s) 631, 736, 1047
AcoI YGGCCR 1 cut(s) 856
AcuI CTGAAG 1 cut(s) 77
AfaI GTAC 2 cut(s) 978, 1745
AfeI AGCGCT 1 cut(s) 851
AfiI CCNNNNNNNGG 5 cut(s) 464, 589, 695, 722, 755
AflIII ACRYGT 3 cut(s) 141, 963, 1339
AgsI TTSAA 4 cut(s) 154, 357, 1233, 1398
AjiI CACGTC 1 cut(s) 1342
AjnI CCWGG 8 cut(s) 385, 457, 491, 900, 1261, 1333, 1426, 1498
AjuI GAANNNNNNNTTGG 2 cut(s) 128, 160
AlwI GGATC 3 cut(s) 631, 736, 1047
AlwNI CAGNNNCTG 1 cut(s) 1884
Aor51HI AGCGCT 1 cut(s) 851
AoxI GGCC 4 cut(s) 546, 856, 1016, 1699
Asp700I GAANNNNTTC 1 cut(s) 1071
AspLEI GCGC 6 cut(s) 852, 1823, 1896, 1929, 1931, 1939
AspS9I GGNCC 3 cut(s) 698, 1016, 1681
AvaII GGWCC 2 cut(s) 698, 1681
BaeI ACNNNNGTAYC 2 cut(s) 722, 755
BalI TGGCCA 1 cut(s) 858
BbsI GAAGAC 2 cut(s) 1564, 1571
BbvI GCAGC 9 cut(s) 229, 1788, 1799, 1821, 1830, 1871, 1883, 1911, 1926
BccI CCATC 7 cut(s) 34, 417, 565, 1076, 1293, 1458, 1952
BceAI ACGGC 1 cut(s) 1589
BciT130I CCWGG 8 cut(s) 387, 459, 493, 902, 1263, 1335, 1428, 1500
BciVI GTATCC 2 cut(s) 37, 750
BclI TGATCA 3 cut(s) 399, 1275, 1440
BfaI CTAG 4 cut(s) 824, 1365, 1949, 1972
BfmI CTRYAG 4 cut(s) 246, 1774, 1897, 1912
BfoI RGCGCY 2 cut(s) 853, 1824
BfuAI ACCTGC 2 cut(s) 561, 1654
BfuI GTATCC 2 cut(s) 37, 750
BglI GCCNNNNNGGC 1 cut(s) 1698
Bme1390I CCNGG 8 cut(s) 387, 459, 493, 902, 1263, 1335, 1428, 1500
Bme18I GGWCC 2 cut(s) 698, 1681
BmgBI CACGTC 1 cut(s) 1342
BmgT120I GGNCC 3 cut(s) 698, 1016, 1681
BmiI GGNNCC 2 cut(s) 699, 1683
BmrFI CCNGG 8 cut(s) 387, 459, 493, 902, 1263, 1335, 1428, 1500
BmrI ACTGGG 5 cut(s) 373, 1249, 1414, 1630, 1872
BmsI GCATC 3 cut(s) 176, 1008, 1757
BmuI ACTGGG 5 cut(s) 373, 1249, 1414, 1630, 1872
BoxI GACNNNNGTC 1 cut(s) 696
BpiI GAAGAC 2 cut(s) 1564, 1571
BpmI CTGGAG 3 cut(s) 354, 1230, 1569
Bpu10I CCTNAGC 2 cut(s) 240, 570
BpuEI CTTGAG 6 cut(s) 416, 1082, 1292, 1457, 1580, 1643
Bsa29I ATCGAT 1 cut(s) 951
BsaJI CCNNGG 8 cut(s) 386, 492, 613, 900, 1049, 1262, 1427, 1590
Bsc4I CCNNNNNNNGG 5 cut(s) 464, 589, 695, 722, 755
Bse3DI GCAATG 1 cut(s) 73
BseBI CCWGG 8 cut(s) 387, 459, 493, 902, 1263, 1335, 1428, 1500
BseCI ATCGAT 1 cut(s) 951
BseDI CCNNGG 8 cut(s) 386, 492, 613, 900, 1049, 1262, 1427, 1590
BseGI GGATG 7 cut(s) 40, 373, 979, 1249, 1414, 1748, 1944
BseLI CCNNNNNNNGG 5 cut(s) 464, 589, 695, 722, 755
BseMI GCAATG 1 cut(s) 73
BseMII CTCAG 6 cut(s) 231, 561, 593, 1075, 1092, 1717
BsePI GCGCGC 1 cut(s) 1927
BseXI GCAGC 9 cut(s) 229, 1788, 1799, 1821, 1830, 1871, 1883, 1911, 1926
BseYI CCCAGC 3 cut(s) 1576, 1872, 1923
BsgI GTGCAG 1 cut(s) 489
Bsh1236I CGCG 2 cut(s) 1894, 1929
Bsh1285I CGRYCG 1 cut(s) 469
BshFI GGCC 4 cut(s) 548, 858, 1018, 1701
BshVI ATCGAT 1 cut(s) 951
BsiEI CGRYCG 1 cut(s) 469
BsiWI CGTACG 1 cut(s) 1743
BslFI GGGAC 3 cut(s) 659, 1031, 1813
BslI CCNNNNNNNGG 5 cut(s) 464, 589, 695, 722, 755
BsmFI GGGAC 3 cut(s) 659, 1031, 1813
BsnI GGCC 4 cut(s) 548, 858, 1018, 1701
Bsp143I GATC 9 cut(s) 178, 399, 623, 728, 929, 982, 1039, 1275, 1440
Bsp19I CCATGG 1 cut(s) 1590
BspACI CCGC 4 cut(s) 1785, 1816, 1852, 1892
BspANI GGCC 4 cut(s) 548, 858, 1018, 1701
BspCNI CTCAG 6 cut(s) 232, 562, 594, 1074, 1091, 1716
BspDI ATCGAT 1 cut(s) 951
BspFNI CGCG 2 cut(s) 1894, 1929
BspLI GGNNCC 2 cut(s) 699, 1683
BspMAI CTGCAG 4 cut(s) 250, 1778, 1901, 1916
BspMI ACCTGC 2 cut(s) 561, 1654
BspPI GGATC 3 cut(s) 631, 736, 1047
BspQI GCTCTTC 2 cut(s) 56, 591
BsrDI GCAATG 1 cut(s) 73
BssECI CCNNGG 8 cut(s) 386, 492, 613, 900, 1049, 1262, 1427, 1590
BssHII GCGCGC 1 cut(s) 1927
BssMI GATC 9 cut(s) 178, 399, 623, 728, 929, 982, 1039, 1275, 1440
BssT1I CCWWGG 2 cut(s) 1049, 1590
Bst2UI CCWGG 8 cut(s) 387, 459, 493, 902, 1263, 1335, 1428, 1500
Bst6I CTCTTC 3 cut(s) 56, 591, 748
BstAPI GCANNNNNTGC 1 cut(s) 1646
BstC8I GCNNGC 9 cut(s) 246, 632, 712, 806, 1088, 1638, 1856, 1929, 1941
BstDEI CTNAG 8 cut(s) 240, 570, 602, 818, 926, 1061, 1078, 1703
BstDSI CCRYGG 2 cut(s) 613, 1590
BstF5I GGATG 7 cut(s) 40, 373, 979, 1249, 1414, 1748, 1944
BstFNI CGCG 2 cut(s) 1894, 1929
BstH2I RGCGCY 2 cut(s) 853, 1824
BstHHI GCGC 6 cut(s) 852, 1823, 1896, 1929, 1931, 1939
BstKTI GATC 9 cut(s) 181, 402, 626, 731, 932, 985, 1042, 1278, 1443
BstMBI GATC 9 cut(s) 178, 399, 623, 728, 929, 982, 1039, 1275, 1440
BstMCI CGRYCG 1 cut(s) 469
BstNI CCWGG 8 cut(s) 387, 459, 493, 902, 1263, 1335, 1428, 1500
BstPAI GACNNNNGTC 1 cut(s) 696
BstSCI CCNGG 8 cut(s) 385, 457, 491, 900, 1261, 1333, 1426, 1498
BstSFI CTRYAG 4 cut(s) 246, 1774, 1897, 1912
BstUI CGCG 2 cut(s) 1894, 1929
BstV1I GCAGC 9 cut(s) 229, 1788, 1799, 1821, 1830, 1871, 1883, 1911, 1926
BstV2I GAAGAC 2 cut(s) 1564, 1571
Bsu15I ATCGAT 1 cut(s) 951
BsuI GTATCC 2 cut(s) 37, 750
BsuRI GGCC 4 cut(s) 548, 858, 1018, 1701
BsuTUI ATCGAT 1 cut(s) 951
BtgI CCRYGG 2 cut(s) 613, 1590
BtgZI GCGATG 1 cut(s) 153
BtrI CACGTC 1 cut(s) 1342
BtsCI GGATG 7 cut(s) 40, 373, 979, 1249, 1414, 1748, 1944
BtsIMutI CAGTG 3 cut(s) 126, 232, 1529
BveI ACCTGC 2 cut(s) 561, 1654
Cac8I GCNNGC 9 cut(s) 246, 632, 712, 806, 1088, 1638, 1856, 1929, 1941
CaiI CAGNNNCTG 1 cut(s) 1884
CfoI GCGC 6 cut(s) 852, 1823, 1896, 1929, 1931, 1939
Cfr13I GGNCC 3 cut(s) 698, 1016, 1681
ClaI ATCGAT 1 cut(s) 951
Csp6I GTAC 2 cut(s) 977, 1744
CviAII CATG 6 cut(s) 160, 188, 214, 1345, 1591, 1697
CviQI GTAC 2 cut(s) 977, 1744
DdeI CTNAG 8 cut(s) 240, 570, 602, 818, 926, 1061, 1078, 1703
DpnI GATC 9 cut(s) 180, 401, 625, 730, 931, 984, 1041, 1277, 1442
DpnII GATC 9 cut(s) 178, 399, 623, 728, 929, 982, 1039, 1275, 1440
EaeI YGGCCR 1 cut(s) 856
Eam1104I CTCTTC 3 cut(s) 56, 591, 748
EarI CTCTTC 3 cut(s) 56, 591, 748
Eco130I CCWWGG 2 cut(s) 1049, 1590
Eco147I AGGCCT 1 cut(s) 548
Eco47I GGWCC 2 cut(s) 698, 1681
Eco47III AGCGCT 1 cut(s) 851
Eco57I CTGAAG 1 cut(s) 77
EcoRII CCWGG 8 cut(s) 385, 457, 491, 900, 1261, 1333, 1426, 1498
EcoT14I CCWWGG 2 cut(s) 1049, 1590
ErhI CCWWGG 2 cut(s) 1049, 1590
FaeI CATG 6 cut(s) 163, 191, 217, 1348, 1594, 1700
FalI AAGNNNNNCTT 2 cut(s) 1556, 1588
FaqI GGGAC 3 cut(s) 659, 1031, 1813
FatI CATG 6 cut(s) 159, 187, 213, 1344, 1590, 1696
FauI CCCGC 1 cut(s) 1899
FauNDI CATATG 2 cut(s) 886, 1370
FbaI TGATCA 3 cut(s) 399, 1275, 1440
FokI GGATG 7 cut(s) 47, 380, 986, 1256, 1421, 1735, 1931
FspBI CTAG 4 cut(s) 824, 1365, 1949, 1972
GlaI GCGC 6 cut(s) 851, 1822, 1895, 1928, 1930, 1938
GsaI CCCAGC 3 cut(s) 1580, 1876, 1927
GsuI CTGGAG 3 cut(s) 354, 1230, 1569
HaeII RGCGCY 2 cut(s) 853, 1824
HaeIII GGCC 4 cut(s) 548, 858, 1018, 1701
HhaI GCGC 6 cut(s) 852, 1823, 1896, 1929, 1931, 1939
Hin1II CATG 6 cut(s) 163, 191, 217, 1348, 1594, 1700
Hin6I GCGC 6 cut(s) 850, 1821, 1894, 1927, 1929, 1937
HinP1I GCGC 6 cut(s) 850, 1821, 1894, 1927, 1929, 1937
HinfI GANTC 9 cut(s) 183, 371, 471, 651, 685, 1247, 1412, 1539, 1956
Hpy166II GTNNAC 1 cut(s) 499
Hpy188III TCNNGA 8 cut(s) 433, 689, 701, 824, 1309, 1474, 1660, 1841
Hpy8I GTNNAC 1 cut(s) 499
HpyAV CCTTC 3 cut(s) 82, 157, 986
HpyCH4IV ACGT 4 cut(s) 141, 861, 965, 1341
HpyF3I CTNAG 8 cut(s) 240, 570, 602, 818, 926, 1061, 1078, 1703
HpySE526I ACGT 4 cut(s) 141, 861, 965, 1341
Hsp92II CATG 6 cut(s) 163, 191, 217, 1348, 1594, 1700
HspAI GCGC 6 cut(s) 850, 1821, 1894, 1927, 1929, 1937
Ksp22I TGATCA 3 cut(s) 399, 1275, 1440
Kzo9I GATC 9 cut(s) 178, 399, 623, 728, 929, 982, 1039, 1275, 1440
LguI GCTCTTC 2 cut(s) 56, 591
LmnI GCTCC 2 cut(s) 921, 1054
Lsp1109I GCAGC 9 cut(s) 229, 1788, 1799, 1821, 1830, 1871, 1883, 1911, 1926
LweI GCATC 3 cut(s) 176, 1008, 1757
MaeI CTAG 4 cut(s) 824, 1365, 1949, 1972
MaeII ACGT 4 cut(s) 141, 861, 965, 1341
MaeIII GTNAC 2 cut(s) 512, 576
MalI GATC 9 cut(s) 180, 401, 625, 730, 931, 984, 1041, 1277, 1442
MboI GATC 9 cut(s) 178, 399, 623, 728, 929, 982, 1039, 1275, 1440
MfeI CAATTG 3 cut(s) 357, 1233, 1398
MlsI TGGCCA 1 cut(s) 858
MluNI TGGCCA 1 cut(s) 858
MlyI GAGTC 7 cut(s) 380, 480, 660, 694, 1256, 1421, 1950
MmeI TCCRAC 2 cut(s) 126, 564
Mox20I TGGCCA 1 cut(s) 858
MroXI GAANNNNTTC 1 cut(s) 1071
MscI TGGCCA 1 cut(s) 858
MseI TTAA 3 cut(s) 864, 1034, 1122
MslI CAYNNNNRTG 1 cut(s) 1595
Msp20I TGGCCA 1 cut(s) 858
MspR9I CCNGG 8 cut(s) 387, 459, 493, 902, 1263, 1335, 1428, 1500
MunI CAATTG 3 cut(s) 357, 1233, 1398
MvaI CCWGG 8 cut(s) 387, 459, 493, 902, 1263, 1335, 1428, 1500
MvnI CGCG 2 cut(s) 1894, 1929
NcoI CCATGG 1 cut(s) 1590
NdeI CATATG 2 cut(s) 886, 1370
NdeII GATC 9 cut(s) 178, 399, 623, 728, 929, 982, 1039, 1275, 1440
NlaIII CATG 6 cut(s) 163, 191, 217, 1348, 1594, 1700
NlaIV GGNNCC 2 cut(s) 699, 1683
PauI GCGCGC 1 cut(s) 1927
PceI AGGCCT 1 cut(s) 548
PciSI GCTCTTC 2 cut(s) 56, 591
PdmI GAANNNNTTC 1 cut(s) 1071
PfeI GAWTC 2 cut(s) 183, 1539
Pfl23II CGTACG 1 cut(s) 1743
PflFI GACNNNGTC 2 cut(s) 465, 650
PfoI TCCNGGA 3 cut(s) 457, 1333, 1498
PleI GAGTC 7 cut(s) 379, 479, 659, 693, 1255, 1420, 1950
PpsI GAGTC 7 cut(s) 379, 479, 659, 693, 1255, 1420, 1950
PshAI GACNNNNGTC 1 cut(s) 696
PsiI TTATAA 1 cut(s) 1614
Psp6I CCWGG 8 cut(s) 385, 457, 491, 900, 1261, 1333, 1426, 1498
PspFI CCCAGC 3 cut(s) 1576, 1872, 1923
PspGI CCWGG 8 cut(s) 385, 457, 491, 900, 1261, 1333, 1426, 1498
PspLI CGTACG 1 cut(s) 1743
PspN4I GGNNCC 2 cut(s) 699, 1683
PspPI GGNCC 3 cut(s) 698, 1016, 1681
PstI CTGCAG 4 cut(s) 250, 1778, 1901, 1916
PstNI CAGNNNCTG 1 cut(s) 1884
PsyI GACNNNGTC 2 cut(s) 465, 650
PteI GCGCGC 1 cut(s) 1927
RsaI GTAC 2 cut(s) 978, 1745
RsaNI GTAC 2 cut(s) 977, 1744
RseI CAYNNNNRTG 1 cut(s) 1595
SapI GCTCTTC 2 cut(s) 56, 591
SaqAI TTAA 3 cut(s) 864, 1034, 1122
Sau3AI GATC 9 cut(s) 178, 399, 623, 728, 929, 982, 1039, 1275, 1440
Sau96I GGNCC 3 cut(s) 698, 1016, 1681
SchI GAGTC 7 cut(s) 380, 480, 660, 694, 1256, 1421, 1950
ScrFI CCNGG 8 cut(s) 387, 459, 493, 902, 1263, 1335, 1428, 1500
SfaNI GCATC 3 cut(s) 176, 1008, 1757
SfcI CTRYAG 4 cut(s) 246, 1774, 1897, 1912
SinI GGWCC 2 cut(s) 698, 1681
SmiMI CAYNNNNRTG 1 cut(s) 1595
SmlI CTYRAG 7 cut(s) 13, 431, 1097, 1307, 1472, 1559, 1658
SmoI CTYRAG 7 cut(s) 13, 431, 1097, 1307, 1472, 1559, 1658
SseBI AGGCCT 1 cut(s) 548
SsiI CCGC 4 cut(s) 1785, 1816, 1852, 1892
SspMI CTAG 4 cut(s) 824, 1365, 1949, 1972
StuI AGGCCT 1 cut(s) 548
StyD4I CCNGG 8 cut(s) 385, 457, 491, 900, 1261, 1333, 1426, 1498
StyI CCWWGG 2 cut(s) 1049, 1590
TaiI ACGT 4 cut(s) 144, 864, 968, 1344
TaqI TCGA 7 cut(s) 181, 266, 469, 769, 951, 1142, 1842
TatI WGTACW 1 cut(s) 976
TauI GCSGC 1 cut(s) 1854
TfiI GAWTC 2 cut(s) 183, 1539
Tru1I TTAA 3 cut(s) 864, 1034, 1122
Tru9I TTAA 3 cut(s) 864, 1034, 1122
TscAI CASTG 3 cut(s) 126, 232, 1536
TspDTI ATGAA 4 cut(s) 146, 176, 1005, 1737
TspGWI ACGGA 2 cut(s) 602, 1731
TspRI CASTG 3 cut(s) 126, 232, 1536
Tth111I GACNNNGTC 2 cut(s) 465, 650
VpaK11BI GGWCC 2 cut(s) 698, 1681
XbaI TCTAGA 1 cut(s) 823
XmnI GAANNNNTTC 1 cut(s) 1071
XspI CTAG 4 cut(s) 824, 1365, 1949, 1972
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.