Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0020318

Physical Location & Seq

Genomic Coordinates Reverse (-)

49279931 .. 49282599

Gene Structure 2669 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG205600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1392 bp

ATGGGTTTCTGCTCAAGTTCCACAGTAGCACGGGATGTGATGGATACAGTTTGTCTGAAGAAGAGCAATGAGAAGCCAAAAAATCAGAAGGTGAGTGAGAGCAAGAAGATAAGAGGAACAGTGGTGTTGATGAAGAAGAACGTGTTGGACTTCAACGACATGAAGGCATCGCTTTTTGATCGAATCCATGAGTTTCTGGGCAAGGGTGTTTCCATGCAGCTCATCAGTGCTACTCAACCTGAGCCTGCAGAAAATGGGTTGATGTCGAGGGGGAAGATTGGAAAGATAGCTTACTTGGAGAACTGGATTACAACCCTTACAGCCTTGACTGCTGGAGATACTGCTTTCACCGTTTCAATTGACTGGGATGAGTCAATGGGAGTTCCTGGGGCTTTGATGATCAGAAACCATCACCATAGCCAATTTTACCTCAAGACAATTACATTAGATGATGTTCCTGGACACGGTCCAGTCCATTTTGTCTGCAATTCCTGGGTTTACCCTGCACATCGTTACAAGTATAATCGGATATTTTTCTCCAACAAGGCCTACCTGCCATCTCAAACACCTGAGCTGTTACTCCCTTACAGGGAAGAAGAGCTAAGTAATCTCCGTGGAAGTGGATCAGGCGAGCTAAAGGAGTGGGACAGAGTCTATGACTATGCTTACTACAATGATTTGGGGAGTCCAGACAAGGGTCCAGAATATGCACGCCCTGTTCTTGGTGGATCACAAGAGTATCCCTATCCAAGAAGAGGAAGAACTGGTCGAAAACCAACTAAAACTGACCCCAACTCTGAAAGCAGGCTGTTTCTTCTAAGTCTAGACATCTATGTTCCAAGAGATGAGCGCTTTGGCCACGTGAAGTTTTCAGATTTTCTTGCATATGCCCTAAAATCCCTGGTTCAGATATTGCTCCCAGAGCTTAGATCTCTGTGTGATAAAACTATCGATGAGTTTGACACGTTTGAGGATGTACTTGATCTCTATGAAGGAGGCATCAAGCTACCAAATGGGCCTACACTCAAAAAATTAAGGGATCGTGTCCCTTGGGAGCTTCTCAGGGAACTACTTCGCTCAGATGGCGAGCGATTTCTCAAGTTCCCAATGCCTGATGTGATTAAAGAGGATAAATGTGCATGGAGGACGGATGAAGAGTTTGCAAGAGAAATGCTGGCAGGGGTTAACCCTGTTAACATCACCCGCCTTCAAGAATTTCCCCCAACCAGCAAGCTAGACCCTAAAGTATATGGGAATCAGAACAGTTCAATACGAAAAGAACAGATAGAAAGGAACATGAATGGCCTCAGTGTTGAAGAAGTATTTTCTTGTCTCTCAGAAGAACTACCATATATAATAAAAACCCAATATTTGTTAAATTCATGTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006629 GO:0007275 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009653 GO:0009791 GO:0009987 GO:0010015 GO:0010101 GO:0010102 GO:0010311 GO:0016491 GO:0016701 GO:0016702 GO:0022622 GO:0030258 GO:0031347 GO:0031348 GO:0032501 GO:0032502 GO:0034440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0048364 GO:0048519 GO:0048527 GO:0048528 GO:0048583 GO:0048585 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0051213 GO:0055114 GO:0065007 GO:0071704 GO:0080134 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:1900366 GO:1905392 GO:1905393 GO:1990136 GO:2000068

KEGG Pathways

Metabolic & Signaling

ko00591 ko00592 ko01100 ko01110 map00591 map00592 map01100 map01110

Pfam Domains

Protein Families

Lipoxygenase PLAT

Protein Analysis

463

Amino Acids

52.93

Weight (kDa)

6.5

Isoelectric Point (pI)

37.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PLAT	PF01477	87 - 179	1.5e-18	PLAT/LH2 domain
Lipoxygenase	PF00305	194 - 442	4.1e-95	Lipoxygenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020318)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g15250 FvH4_4g15250 FvH4_4g15250
rosa_multiflora	Rmu_sc0003722.1_g000050
rosa_samantha	Rh4AG205600 Rh4DG202600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	561
AciI	CCGC	1 cut(s)	1204
AclWI	GGATC	3 cut(s)	631, 736, 1047
AcoI	YGGCCR	1 cut(s)	856
AcsI	RAATTY	2 cut(s)	1214, 1378
AcuI	CTGAAG	1 cut(s)	77
AcvI	CACGTG	1 cut(s)	862
AfaI	GTAC	1 cut(s)	978
AfeI	AGCGCT	1 cut(s)	851
AfiI	CCNNNNNNNGG	5 cut(s)	464, 589, 695, 722, 755
AflIII	ACRYGT	2 cut(s)	141, 963
AgsI	TTSAA	5 cut(s)	154, 357, 1211, 1269, 1316
AjnI	CCWGG	4 cut(s)	385, 457, 491, 900
AjuI	GAANNNNNNNTTGG	2 cut(s)	128, 160
AluBI	AGCT	9 cut(s)	220, 290, 574, 601, 634, 925, 1006, 1057, 1234
AluI	AGCT	9 cut(s)	220, 290, 574, 601, 634, 925, 1006, 1057, 1234
Alw26I	GTCTC	1 cut(s)	1337
AlwI	GGATC	3 cut(s)	631, 736, 1047
Aor51HI	AGCGCT	1 cut(s)	851
AoxI	GGCC	4 cut(s)	546, 856, 1016, 1303
ApeKI	GCWGC	1 cut(s)	217
ApoI	RAATTY	2 cut(s)	1214, 1378
Asp700I	GAANNNNTTC	1 cut(s)	1071
AspLEI	GCGC	1 cut(s)	852
AspS9I	GGNCC	3 cut(s)	467, 698, 1016
AsuHPI	GGTGA	4 cut(s)	103, 340, 404, 1192
AvaII	GGWCC	2 cut(s)	467, 698
BaeI	ACNNNNGTAYC	2 cut(s)	722, 755
BalI	TGGCCA	1 cut(s)	858
BbrPI	CACGTG	1 cut(s)	862
BbvI	GCAGC	1 cut(s)	229
BccI	CCATC	4 cut(s)	34, 417, 565, 1076
BciT130I	CCWGG	4 cut(s)	387, 459, 493, 902
BciVI	GTATCC	2 cut(s)	37, 750
BclI	TGATCA	1 cut(s)	399
BcoDI	GTCTC	1 cut(s)	1337
BfaI	CTAG	2 cut(s)	824, 1235
BfmI	CTRYAG	1 cut(s)	246
BfoI	RGCGCY	1 cut(s)	853
BfuAI	ACCTGC	1 cut(s)	561
BfuI	GTATCC	2 cut(s)	37, 750
BglII	AGATCT	1 cut(s)	929
BisI	GCNGC	1 cut(s)	218
BlsI	GCNGC	1 cut(s)	219
Bme1390I	CCNGG	4 cut(s)	387, 459, 493, 902
Bme18I	GGWCC	2 cut(s)	467, 698
BmgT120I	GGNCC	3 cut(s)	467, 698, 1016
BmiI	GGNNCC	1 cut(s)	699
BmrFI	CCNGG	4 cut(s)	387, 459, 493, 902
BmrI	ACTGGG	1 cut(s)	373
BmsI	GCATC	2 cut(s)	176, 1008
BmuI	ACTGGG	1 cut(s)	373
BoxI	GACNNNNGTC	1 cut(s)	696
BpmI	CTGGAG	1 cut(s)	354
Bpu10I	CCTNAGC	2 cut(s)	240, 570
BpuEI	CTTGAG	2 cut(s)	416, 1082
Bsa29I	ATCGAT	1 cut(s)	951
BsaAI	YACGTR	1 cut(s)	862
BsaJI	CCNNGG	5 cut(s)	386, 492, 613, 900, 1049
Bsc4I	CCNNNNNNNGG	5 cut(s)	464, 589, 695, 722, 755
Bse1I	ACTGG	4 cut(s)	308, 368, 470, 769
Bse3DI	GCAATG	1 cut(s)	73
BseBI	CCWGG	4 cut(s)	387, 459, 493, 902
BseCI	ATCGAT	1 cut(s)	951
BseDI	CCNNGG	5 cut(s)	386, 492, 613, 900, 1049
BseGI	GGATG	4 cut(s)	40, 373, 979, 1156
BseLI	CCNNNNNNNGG	5 cut(s)	464, 589, 695, 722, 755
BseMI	GCAATG	1 cut(s)	73
BseMII	CTCAG	6 cut(s)	231, 561, 1075, 1092, 1321, 1350
BseNI	ACTGG	4 cut(s)	308, 368, 470, 769
BseXI	GCAGC	1 cut(s)	229
BsgI	GTGCAG	1 cut(s)	489
BshFI	GGCC	4 cut(s)	548, 858, 1018, 1305
BshVI	ATCGAT	1 cut(s)	951
BslFI	GGGAC	2 cut(s)	659, 1031
BslI	CCNNNNNNNGG	5 cut(s)	464, 589, 695, 722, 755
BsmAI	GTCTC	1 cut(s)	1337
BsmFI	GGGAC	2 cut(s)	659, 1031
BsnI	GGCC	4 cut(s)	548, 858, 1018, 1305
Bsp143I	GATC	7 cut(s)	178, 399, 623, 728, 929, 982, 1039
BspACI	CCGC	1 cut(s)	1204
BspANI	GGCC	4 cut(s)	548, 858, 1018, 1305
BspCNI	CTCAG	6 cut(s)	232, 562, 1074, 1091, 1320, 1349
BspDI	ATCGAT	1 cut(s)	951
BspLI	GGNNCC	1 cut(s)	699
BspMAI	CTGCAG	1 cut(s)	250
BspMI	ACCTGC	1 cut(s)	561
BspPI	GGATC	3 cut(s)	631, 736, 1047
BspQI	GCTCTTC	2 cut(s)	56, 591
BsrDI	GCAATG	1 cut(s)	73
BsrI	ACTGG	4 cut(s)	308, 368, 470, 769
BssECI	CCNNGG	5 cut(s)	386, 492, 613, 900, 1049
BssMI	GATC	7 cut(s)	178, 399, 623, 728, 929, 982, 1039
BssT1I	CCWWGG	1 cut(s)	1049
Bst2UI	CCWGG	4 cut(s)	387, 459, 493, 902
Bst4CI	ACNGT	6 cut(s)	25, 49, 121, 352, 467, 1265
Bst6I	CTCTTC	4 cut(s)	56, 591, 748, 1149
BstBAI	YACGTR	1 cut(s)	862
BstC8I	GCNNGC	7 cut(s)	246, 632, 712, 806, 1088, 1176, 1232
BstDEI	CTNAG	9 cut(s)	240, 570, 602, 818, 926, 1061, 1078, 1307, 1336
BstDSI	CCRYGG	1 cut(s)	613
BstF5I	GGATG	4 cut(s)	40, 373, 979, 1156
BstH2I	RGCGCY	1 cut(s)	853
BstHHI	GCGC	1 cut(s)	852
BstKTI	GATC	7 cut(s)	181, 402, 626, 731, 932, 985, 1042
BstMAI	GTCTC	1 cut(s)	1337
BstMBI	GATC	7 cut(s)	178, 399, 623, 728, 929, 982, 1039
BstMWI	GCNNNNNNNGC	3 cut(s)	329, 922, 1083
BstNI	CCWGG	4 cut(s)	387, 459, 493, 902
BstPAI	GACNNNNGTC	1 cut(s)	696
BstSCI	CCNGG	4 cut(s)	385, 457, 491, 900
BstSFI	CTRYAG	1 cut(s)	246
BstV1I	GCAGC	1 cut(s)	229
BstX2I	RGATCY	1 cut(s)	929
BstYI	RGATCY	1 cut(s)	929
Bsu15I	ATCGAT	1 cut(s)	951
BsuI	GTATCC	2 cut(s)	37, 750
BsuRI	GGCC	4 cut(s)	548, 858, 1018, 1305
BsuTUI	ATCGAT	1 cut(s)	951
BtgI	CCRYGG	1 cut(s)	613
BtgZI	GCGATG	1 cut(s)	153
BtsCI	GGATG	4 cut(s)	40, 373, 979, 1156
BtsIMutI	CAGTG	3 cut(s)	126, 232, 1315
BveI	ACCTGC	1 cut(s)	561
Cac8I	GCNNGC	7 cut(s)	246, 632, 712, 806, 1088, 1176, 1232
CfoI	GCGC	1 cut(s)	852
Cfr13I	GGNCC	3 cut(s)	467, 698, 1016
ClaI	ATCGAT	1 cut(s)	951
Csp6I	GTAC	1 cut(s)	977
CviAII	CATG	6 cut(s)	160, 188, 214, 1140, 1297, 1383
CviQI	GTAC	1 cut(s)	977
DdeI	CTNAG	9 cut(s)	240, 570, 602, 818, 926, 1061, 1078, 1307, 1336
DpnI	GATC	7 cut(s)	180, 401, 625, 730, 931, 984, 1041
DpnII	GATC	7 cut(s)	178, 399, 623, 728, 929, 982, 1039
EaeI	YGGCCR	1 cut(s)	856
Eam1104I	CTCTTC	4 cut(s)	56, 591, 748, 1149
EarI	CTCTTC	4 cut(s)	56, 591, 748, 1149
Eco130I	CCWWGG	1 cut(s)	1049
Eco147I	AGGCCT	1 cut(s)	548
Eco47I	GGWCC	2 cut(s)	467, 698
Eco47III	AGCGCT	1 cut(s)	851
Eco57I	CTGAAG	1 cut(s)	77
Eco72I	CACGTG	1 cut(s)	862
EcoRII	CCWGG	4 cut(s)	385, 457, 491, 900
EcoT14I	CCWWGG	1 cut(s)	1049
ErhI	CCWWGG	1 cut(s)	1049
FaeI	CATG	6 cut(s)	163, 191, 217, 1143, 1300, 1386
FaqI	GGGAC	2 cut(s)	659, 1031
FatI	CATG	6 cut(s)	159, 187, 213, 1139, 1296, 1382
FauI	CCCGC	1 cut(s)	1211
FauNDI	CATATG	1 cut(s)	886
FbaI	TGATCA	1 cut(s)	399
Fnu4HI	GCNGC	1 cut(s)	218
FokI	GGATG	4 cut(s)	47, 380, 986, 1163
Fsp4HI	GCNGC	1 cut(s)	218
FspBI	CTAG	2 cut(s)	824, 1235
GlaI	GCGC	1 cut(s)	851
GluI	GCNGC	1 cut(s)	218
GsuI	CTGGAG	1 cut(s)	354
HaeII	RGCGCY	1 cut(s)	853
HaeIII	GGCC	4 cut(s)	548, 858, 1018, 1305
HhaI	GCGC	1 cut(s)	852
Hin1II	CATG	6 cut(s)	163, 191, 217, 1143, 1300, 1386
Hin6I	GCGC	1 cut(s)	850
HinP1I	GCGC	1 cut(s)	850
HincII	GTYRAC	2 cut(s)	1186, 1195
HindII	GTYRAC	2 cut(s)	1186, 1195
HinfI	GANTC	5 cut(s)	183, 371, 651, 685, 1255
HpaI	GTTAAC	2 cut(s)	1186, 1195
HphI	GGTGA	4 cut(s)	103, 340, 404, 1192
Hpy166II	GTNNAC	3 cut(s)	499, 1186, 1195
Hpy188III	TCNNGA	5 cut(s)	433, 689, 701, 824, 1211
Hpy8I	GTNNAC	3 cut(s)	499, 1186, 1195
HpyAV	CCTTC	4 cut(s)	82, 157, 986, 1217
HpyCH4III	ACNGT	6 cut(s)	25, 49, 121, 352, 467, 1265
HpyCH4IV	ACGT	3 cut(s)	141, 861, 965
HpyCH4V	TGCA	9 cut(s)	217, 248, 486, 506, 710, 884, 1139, 1163, 1388
HpyF10VI	GCNNNNNNNGC	3 cut(s)	329, 922, 1083
HpyF3I	CTNAG	9 cut(s)	240, 570, 602, 818, 926, 1061, 1078, 1307, 1336
HpySE526I	ACGT	3 cut(s)	141, 861, 965
Hsp92II	CATG	6 cut(s)	163, 191, 217, 1143, 1300, 1386
HspAI	GCGC	1 cut(s)	850
Ksp22I	TGATCA	1 cut(s)	399
KspAI	GTTAAC	2 cut(s)	1186, 1195
Kzo9I	GATC	7 cut(s)	178, 399, 623, 728, 929, 982, 1039
LguI	GCTCTTC	2 cut(s)	56, 591
LmnI	GCTCC	2 cut(s)	921, 1054
Lsp1109I	GCAGC	1 cut(s)	229
LweI	GCATC	2 cut(s)	176, 1008
MaeI	CTAG	2 cut(s)	824, 1235
MaeII	ACGT	3 cut(s)	141, 861, 965
MaeIII	GTNAC	2 cut(s)	512, 576
MalI	GATC	7 cut(s)	180, 401, 625, 730, 931, 984, 1041
MboI	GATC	7 cut(s)	178, 399, 623, 728, 929, 982, 1039
MfeI	CAATTG	1 cut(s)	357
MflI	RGATCY	1 cut(s)	929
MlsI	TGGCCA	1 cut(s)	858
MluCI	AATT	7 cut(s)	357, 422, 438, 487, 1031, 1214, 1378
MluNI	TGGCCA	1 cut(s)	858
MlyI	GAGTC	3 cut(s)	380, 660, 694
MmeI	TCCRAC	2 cut(s)	126, 564
MnlI	CCTC	9 cut(s)	107, 261, 440, 749, 964, 989, 1120, 1137, 1316
Mox20I	TGGCCA	1 cut(s)	858
MroXI	GAANNNNTTC	1 cut(s)	1071
MscI	TGGCCA	1 cut(s)	858
MseI	TTAA	5 cut(s)	1034, 1122, 1185, 1194, 1376
Msp20I	TGGCCA	1 cut(s)	858
MspR9I	CCNGG	4 cut(s)	387, 459, 493, 902
MunI	CAATTG	1 cut(s)	357
MvaI	CCWGG	4 cut(s)	387, 459, 493, 902
MwoI	GCNNNNNNNGC	3 cut(s)	329, 922, 1083
NdeI	CATATG	1 cut(s)	886
NdeII	GATC	7 cut(s)	178, 399, 623, 728, 929, 982, 1039
NlaIII	CATG	6 cut(s)	163, 191, 217, 1143, 1300, 1386
NlaIV	GGNNCC	1 cut(s)	699
PceI	AGGCCT	1 cut(s)	548
PciSI	GCTCTTC	2 cut(s)	56, 591
PdmI	GAANNNNTTC	1 cut(s)	1071
PfeI	GAWTC	2 cut(s)	183, 1255
PflFI	GACNNNGTC	2 cut(s)	465, 650
PfoI	TCCNGGA	1 cut(s)	457
PkrI	GCNGC	1 cut(s)	219
PleI	GAGTC	3 cut(s)	379, 659, 693
PmaCI	CACGTG	1 cut(s)	862
PmlI	CACGTG	1 cut(s)	862
PpsI	GAGTC	3 cut(s)	379, 659, 693
Ppu21I	YACGTR	1 cut(s)	862
PshAI	GACNNNNGTC	1 cut(s)	696
Psp6I	CCWGG	4 cut(s)	385, 457, 491, 900
PspCI	CACGTG	1 cut(s)	862
PspGI	CCWGG	4 cut(s)	385, 457, 491, 900
PspN4I	GGNNCC	1 cut(s)	699
PspPI	GGNCC	3 cut(s)	467, 698, 1016
PstI	CTGCAG	1 cut(s)	250
PsuI	RGATCY	1 cut(s)	929
PsyI	GACNNNGTC	2 cut(s)	465, 650
RsaI	GTAC	1 cut(s)	978
RsaNI	GTAC	1 cut(s)	977
SapI	GCTCTTC	2 cut(s)	56, 591
SaqAI	TTAA	5 cut(s)	1034, 1122, 1185, 1194, 1376
SatI	GCNGC	1 cut(s)	218
Sau3AI	GATC	7 cut(s)	178, 399, 623, 728, 929, 982, 1039
Sau96I	GGNCC	3 cut(s)	467, 698, 1016
SchI	GAGTC	3 cut(s)	380, 660, 694
ScrFI	CCNGG	4 cut(s)	387, 459, 493, 902
SfaNI	GCATC	2 cut(s)	176, 1008
SfcI	CTRYAG	1 cut(s)	246
SinI	GGWCC	2 cut(s)	467, 698
SmlI	CTYRAG	3 cut(s)	13, 431, 1097
SmoI	CTYRAG	3 cut(s)	13, 431, 1097
Sse9I	AATT	7 cut(s)	357, 422, 438, 487, 1031, 1214, 1378
SseBI	AGGCCT	1 cut(s)	548
SsiI	CCGC	1 cut(s)	1204
SspI	AATATT	1 cut(s)	1370
SspMI	CTAG	2 cut(s)	824, 1235
StuI	AGGCCT	1 cut(s)	548
StyD4I	CCNGG	4 cut(s)	385, 457, 491, 900
StyI	CCWWGG	1 cut(s)	1049
TaaI	ACNGT	6 cut(s)	25, 49, 121, 352, 467, 1265
TaiI	ACGT	3 cut(s)	144, 864, 968
TaqI	TCGA	4 cut(s)	181, 266, 769, 951
TasI	AATT	7 cut(s)	357, 422, 438, 487, 1031, 1214, 1378
TatI	WGTACW	1 cut(s)	976
TfiI	GAWTC	2 cut(s)	183, 1255
Tru1I	TTAA	5 cut(s)	1034, 1122, 1185, 1194, 1376
Tru9I	TTAA	5 cut(s)	1034, 1122, 1185, 1194, 1376
TscAI	CASTG	3 cut(s)	126, 232, 1315
TseI	GCWGC	1 cut(s)	217
TspDTI	ATGAA	6 cut(s)	146, 176, 1005, 1167, 1313, 1371
TspGWI	ACGGA	2 cut(s)	602, 1163
TspRI	CASTG	3 cut(s)	126, 232, 1315
Tth111I	GACNNNGTC	2 cut(s)	465, 650
VpaK11BI	GGWCC	2 cut(s)	467, 698
XapI	RAATTY	2 cut(s)	1214, 1378
XbaI	TCTAGA	1 cut(s)	823
XmnI	GAANNNNTTC	1 cut(s)	1071
XspI	CTAG	2 cut(s)	824, 1235

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.