Rmu_sc0003767.1_g000004

Ribosomal protein-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003767.1
OG0023540
Physical Location & Seq
Reverse (-)
15516 .. 16124
609 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003767.1_g000004.1.cds

Sequence Viewer

Length: 609 bp
atggattcatcccaaataccatcatcatctctttcttcaaatggaaccgttgagtatcgcaattctgtcttggccgcatttgatcgggagcaagatttgttacttcatatgtgtgctaacaacaatctcctattagcagaaaatctcgacagcgaagaagatgatgctcaatcatgccggagaggtgcaattcctggtcaaatagttgtttatcatgatcgagaagctgctgcacacaatttgtttacggattatttcgcagaggtcccccgatttggtgagctaaaatttcgcagacgttttcaaatgagtaaaagtttattttatcggattgctgatgcggtcaaaaatcatgacaatttctttatgcaacaacgtgatggaattggtaggttcggattttcatcctttgtaaaaatcacagctgtttttcgaatgcttacatatgatgtaccagctgattctctcgatgaatacttaaaaattggtgagtccacagcaattagatgcatgaaaaagttttgtcaggctattgtagaaatatttggagagcaatatctcagaaaaccaacaactattgatgttgcaagactcgtccacagcaattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Plant_tran

Protein Analysis

202

Amino Acids

23.1

Weight (kDa)

5.96

Isoelectric Point (pI)

41.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0023540)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0003767.1_g000004
rosa_roxburghii Rroxscaffold_1G00035000 Rroxscaffold_2G00084180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 75, 341
AcoI YGGCCR 1 cut(s) 72
AcsI RAATTY 1 cut(s) 287
AfaI GTAC 1 cut(s) 453
AfiI CCNNNNNNNGG 1 cut(s) 275
AgsI TTSAA 2 cut(s) 39, 305
AjnI CCWGG 1 cut(s) 193
AluBI AGCT 4 cut(s) 227, 283, 425, 458
AluI AGCT 4 cut(s) 227, 283, 425, 458
AoxI GGCC 1 cut(s) 72
ApeKI GCWGC 2 cut(s) 227, 230
ApoI RAATTY 1 cut(s) 287
AspS9I GGNCC 1 cut(s) 265
AsuHPI GGTGA 2 cut(s) 290, 500
AsuII TTCGAA 1 cut(s) 433
AvaII GGWCC 1 cut(s) 265
BbvI GCAGC 2 cut(s) 214, 217
BccI CCATC 2 cut(s) 28, 374
BciT130I CCWGG 1 cut(s) 195
BisI GCNGC 3 cut(s) 75, 228, 231
BlsI GCNGC 3 cut(s) 76, 229, 232
Bme1390I CCNGG 1 cut(s) 195
Bme18I GGWCC 1 cut(s) 265
BmgT120I GGNCC 1 cut(s) 265
BmiI GGNNCC 2 cut(s) 46, 267
BmrFI CCNGG 1 cut(s) 195
BmsI GCATC 3 cut(s) 154, 328, 497
Bpu14I TTCGAA 1 cut(s) 433
BsaBI GATNNNNATC 1 cut(s) 403
Bsc4I CCNNNNNNNGG 1 cut(s) 275
Bse8I GATNNNNATC 1 cut(s) 403
BseBI CCWGG 1 cut(s) 195
BseGI GGATG 2 cut(s) 8, 404
BseJI GATNNNNATC 1 cut(s) 403
BseLI CCNNNNNNNGG 1 cut(s) 275
BseMII CTCAG 1 cut(s) 574
BseXI GCAGC 2 cut(s) 214, 217
BsgI GTGCAG 1 cut(s) 216
BshFI GGCC 1 cut(s) 74
BsiSI CCGG 1 cut(s) 178
BslFI GGGAC 1 cut(s) 251
BslI CCNNNNNNNGG 1 cut(s) 275
BsmFI GGGAC 1 cut(s) 251
BsmI GAATGC 1 cut(s) 441
BsnI GGCC 1 cut(s) 74
Bsp119I TTCGAA 1 cut(s) 433
Bsp143I GATC 2 cut(s) 82, 217
BspACI CCGC 2 cut(s) 75, 341
BspANI GGCC 1 cut(s) 74
BspCNI CTCAG 1 cut(s) 573
BspHI TCATGA 2 cut(s) 214, 352
BspLI GGNNCC 2 cut(s) 46, 267
BspT104I TTCGAA 1 cut(s) 433
BssMI GATC 2 cut(s) 82, 217
Bst2UI CCWGG 1 cut(s) 195
Bst4CI ACNGT 1 cut(s) 49
BstBI TTCGAA 1 cut(s) 433
BstDEI CTNAG 1 cut(s) 560
BstF5I GGATG 2 cut(s) 8, 404
BstKTI GATC 2 cut(s) 85, 220
BstMBI GATC 2 cut(s) 82, 217
BstNI CCWGG 1 cut(s) 195
BstSCI CCNGG 1 cut(s) 193
BstV1I GCAGC 2 cut(s) 214, 217
BsuRI GGCC 1 cut(s) 74
BtsCI GGATG 2 cut(s) 8, 404
CciI TCATGA 2 cut(s) 214, 352
Cfr13I GGNCC 1 cut(s) 265
Csp6I GTAC 1 cut(s) 452
CviAII CATG 4 cut(s) 174, 215, 353, 511
CviJI RGCY 6 cut(s) 74, 227, 283, 425, 458, 530
CviKI_1 RGCY 6 cut(s) 74, 227, 283, 425, 458, 530
CviQI GTAC 1 cut(s) 452
DdeI CTNAG 1 cut(s) 560
DpnI GATC 2 cut(s) 84, 219
DpnII GATC 2 cut(s) 82, 217
EaeI YGGCCR 1 cut(s) 72
Eco47I GGWCC 1 cut(s) 265
EcoO109I RGGNCCY 1 cut(s) 265
EcoRII CCWGG 1 cut(s) 193
EcoT22I ATGCAT 1 cut(s) 512
FaeI CATG 4 cut(s) 177, 218, 356, 514
FaiI YATR 9 cut(s) 108, 110, 175, 216, 354, 368, 445, 447, 512
FaqI GGGAC 1 cut(s) 251
FatI CATG 4 cut(s) 173, 214, 352, 510
FauNDI CATATG 2 cut(s) 108, 445
Fnu4HI GCNGC 3 cut(s) 75, 228, 231
FokI GGATG 1 cut(s) 391
Fsp4HI GCNGC 3 cut(s) 75, 228, 231
GluI GCNGC 3 cut(s) 75, 228, 231
HaeIII GGCC 1 cut(s) 74
HapII CCGG 1 cut(s) 178
Hin1II CATG 4 cut(s) 177, 218, 356, 514
HinfI GANTC 4 cut(s) 5, 461, 491, 591
HpaII CCGG 1 cut(s) 178
HphI GGTGA 2 cut(s) 290, 500
Hpy166II GTNNAC 3 cut(s) 246, 495, 598
Hpy188I TCNGA 3 cut(s) 330, 398, 563
Hpy188III TCNNGA 6 cut(s) 86, 146, 215, 221, 353, 467
Hpy8I GTNNAC 3 cut(s) 246, 495, 598
HpyCH4III ACNGT 1 cut(s) 49
HpyCH4IV ACGT 2 cut(s) 298, 376
HpyCH4V TGCA 5 cut(s) 188, 233, 370, 510, 587
HpyF3I CTNAG 1 cut(s) 560
HpySE526I ACGT 2 cut(s) 298, 376
Hsp92II CATG 4 cut(s) 177, 218, 356, 514
Kzo9I GATC 2 cut(s) 82, 217
LmnI GCTCC 1 cut(s) 88
LpnPI CCDG 5 cut(s) 180, 191, 207, 468, 512
Lsp1109I GCAGC 2 cut(s) 214, 217
LweI GCATC 3 cut(s) 154, 328, 497
MaeII ACGT 2 cut(s) 298, 376
MaeIII GTNAC 1 cut(s) 99
MalI GATC 2 cut(s) 84, 219
MboI GATC 2 cut(s) 82, 217
MboII GAAGA 3 cut(s) 27, 167, 170
MluCI AATT 9 cut(s) 61, 189, 238, 287, 358, 384, 483, 501, 604
MlyI GAGTC 2 cut(s) 500, 585
MnlI CCTC 2 cut(s) 176, 256
Mph1103I ATGCAT 1 cut(s) 512
MseI TTAA 1 cut(s) 479
MslI CAYNNNNRTG 1 cut(s) 111
MspA1I CMGCKG 2 cut(s) 425, 458
MspI CCGG 1 cut(s) 178
MspR9I CCNGG 1 cut(s) 195
Mva1269I GAATGC 1 cut(s) 441
MvaI CCWGG 1 cut(s) 195
NdeI CATATG 2 cut(s) 108, 445
NdeII GATC 2 cut(s) 82, 217
NlaIII CATG 4 cut(s) 177, 218, 356, 514
NlaIV GGNNCC 2 cut(s) 46, 267
NsiI ATGCAT 1 cut(s) 512
NspV TTCGAA 1 cut(s) 433
PagI TCATGA 2 cut(s) 214, 352
PctI GAATGC 1 cut(s) 441
PfeI GAWTC 2 cut(s) 5, 461
PkrI GCNGC 3 cut(s) 76, 229, 232
PleI GAGTC 2 cut(s) 499, 585
PpsI GAGTC 2 cut(s) 499, 585
PpuMI RGGWCCY 1 cut(s) 265
Psp5II RGGWCCY 1 cut(s) 265
Psp6I CCWGG 1 cut(s) 193
PspGI CCWGG 1 cut(s) 193
PspN4I GGNNCC 2 cut(s) 46, 267
PspPI GGNCC 1 cut(s) 265
PspPPI RGGWCCY 1 cut(s) 265
PvuII CAGCTG 2 cut(s) 425, 458
RsaI GTAC 1 cut(s) 453
RsaNI GTAC 1 cut(s) 452
RseI CAYNNNNRTG 1 cut(s) 111
SaqAI TTAA 1 cut(s) 479
SatI GCNGC 3 cut(s) 75, 228, 231
Sau3AI GATC 2 cut(s) 82, 217
Sau96I GGNCC 1 cut(s) 265
SchI GAGTC 2 cut(s) 500, 585
ScrFI CCNGG 1 cut(s) 195
SetI ASST 9 cut(s) 187, 229, 267, 285, 301, 379, 395, 427, 460
SfaNI GCATC 3 cut(s) 154, 328, 497
SfuI TTCGAA 1 cut(s) 433
SinI GGWCC 1 cut(s) 265
SmiMI CAYNNNNRTG 1 cut(s) 111
Sse9I AATT 9 cut(s) 61, 189, 238, 287, 358, 384, 483, 501, 604
SsiI CCGC 2 cut(s) 75, 341
SspI AATATT 1 cut(s) 543
StyD4I CCNGG 1 cut(s) 193
TaaI ACNGT 1 cut(s) 49
TaiI ACGT 2 cut(s) 301, 379
TaqI TCGA 4 cut(s) 147, 220, 433, 468
TasI AATT 9 cut(s) 61, 189, 238, 287, 358, 384, 483, 501, 604
TauI GCSGC 1 cut(s) 77
TfiI GAWTC 2 cut(s) 5, 461
Tru1I TTAA 1 cut(s) 479
Tru9I TTAA 1 cut(s) 479
TseI GCWGC 2 cut(s) 227, 230
TspDTI ATGAA 4 cut(s) 95, 393, 486, 527
TspGWI ACGGA 1 cut(s) 263
VpaK11BI GGWCC 1 cut(s) 265
XapI RAATTY 1 cut(s) 287
Zsp2I ATGCAT 1 cut(s) 512
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.