Rroxscaffold_2G00084180

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0023540
Physical Location & Seq
Forward (+)
6667869 .. 6679916
12048 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00084180.1

Sequence Viewer

Length: 483 bp
ATGTTTCATCACTTGGTGCTGCCATGTGACAATAAATTGAAGGAGATGCTTAGAATTGGGGTCGCGGAACGGAGCATGCAGCCCAGGACCAGAGCCACATCAATGAGCTTCCTCCTGGAGGAGGTTCAAAGTTCTAAGGGGGCATTGCACCCATATATTTTCTCTTTAATCGCCATTACGGGTTTGCTCCTTCAAGCGAAGCGAGCAGCTGGAGTTACGGAGAGACTGCTCTCCAACCAAGACATGAAGACCCTGTTGAACCACCACAACTGTCACCACCAAGGCCCGCGATGTAAGAGCCAAGCTTGCAACCCAACTTCTAATTCTGACAAGGACCAAAATATCGAGTTTCGAGGAAATATCGATGGTCCCGAAAACGGAAATTTCGACGGAAATATCGAGGATATATCGATTTCGAAGCTGGTTTGGTTTGAGCATGATGAATCACTGCGTGCCGATGTAAGGGGGCATGAACAACCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

160

Amino Acids

18.04

Weight (kDa)

6.49

Isoelectric Point (pI)

50.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0023540)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0003767.1_g000004
rosa_roxburghii Rroxscaffold_1G00035000 Rroxscaffold_2G00084180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 65, 289
AciI CCGC 2 cut(s) 65, 287
AcsI RAATTY 1 cut(s) 382
AdeI CACNNNGTG 2 cut(s) 16, 452
AfiI CCNNNNNNNGG 4 cut(s) 118, 121, 377, 462
AgsI TTSAA 4 cut(s) 40, 128, 194, 259
AjnI CCWGG 2 cut(s) 83, 114
AjuI GAANNNNNNNTTGG 2 cut(s) 307, 339
AluBI AGCT 4 cut(s) 108, 209, 305, 421
AluI AGCT 4 cut(s) 108, 209, 305, 421
Alw26I GTCTC 1 cut(s) 217
AoxI GGCC 1 cut(s) 283
ApeKI GCWGC 3 cut(s) 19, 79, 206
ApoI RAATTY 1 cut(s) 382
AspS9I GGNCC 4 cut(s) 87, 284, 334, 368
AsuHPI GGTGA 1 cut(s) 266
AsuII TTCGAA 1 cut(s) 416
AvaII GGWCC 3 cut(s) 87, 334, 368
BbsI GAAGAC 1 cut(s) 254
BbvI GCAGC 3 cut(s) 6, 91, 218
BccI CCATC 1 cut(s) 359
BciT130I CCWGG 2 cut(s) 85, 116
BcoDI GTCTC 1 cut(s) 217
BisI GCNGC 3 cut(s) 20, 80, 207
BlsI GCNGC 3 cut(s) 21, 81, 208
Bme1390I CCNGG 2 cut(s) 85, 116
Bme18I GGWCC 3 cut(s) 87, 334, 368
BmgT120I GGNCC 4 cut(s) 87, 284, 334, 368
BmiI GGNNCC 1 cut(s) 370
BmrFI CCNGG 2 cut(s) 85, 116
BmsI GCATC 1 cut(s) 36
BpiI GAAGAC 1 cut(s) 254
BpmI CTGGAG 2 cut(s) 137, 231
Bpu14I TTCGAA 1 cut(s) 416
Bsa29I ATCGAT 2 cut(s) 363, 410
BsaJI CCNNGG 2 cut(s) 83, 280
Bsc4I CCNNNNNNNGG 4 cut(s) 118, 121, 377, 462
Bse3DI GCAATG 1 cut(s) 143
BseBI CCWGG 2 cut(s) 85, 116
BseCI ATCGAT 2 cut(s) 363, 410
BseDI CCNNGG 2 cut(s) 83, 280
BseLI CCNNNNNNNGG 4 cut(s) 118, 121, 377, 462
BseMI GCAATG 1 cut(s) 143
BseRI GAGGAG 1 cut(s) 134
BseXI GCAGC 3 cut(s) 6, 91, 218
Bsh1236I CGCG 2 cut(s) 65, 289
BshFI GGCC 1 cut(s) 285
BshVI ATCGAT 2 cut(s) 363, 410
BslFI GGGAC 1 cut(s) 354
BslI CCNNNNNNNGG 4 cut(s) 118, 121, 377, 462
BsmAI GTCTC 1 cut(s) 217
BsmFI GGGAC 1 cut(s) 354
BsnI GGCC 1 cut(s) 285
Bsp119I TTCGAA 1 cut(s) 416
BspACI CCGC 2 cut(s) 65, 287
BspANI GGCC 1 cut(s) 285
BspDI ATCGAT 2 cut(s) 363, 410
BspFNI CGCG 2 cut(s) 65, 289
BspLI GGNNCC 1 cut(s) 370
BspT104I TTCGAA 1 cut(s) 416
BsrDI GCAATG 1 cut(s) 143
BssECI CCNNGG 2 cut(s) 83, 280
BssT1I CCWWGG 1 cut(s) 280
Bst2UI CCWGG 2 cut(s) 85, 116
Bst4CI ACNGT 1 cut(s) 272
BstBI TTCGAA 1 cut(s) 416
BstC8I GCNNGC 5 cut(s) 77, 204, 287, 307, 453
BstDEI CTNAG 2 cut(s) 50, 135
BstENI CCTNNNNNAGG 2 cut(s) 116, 119
BstFNI CGCG 2 cut(s) 65, 289
BstMAI GTCTC 1 cut(s) 217
BstMWI GCNNNNNNNGC 2 cut(s) 203, 306
BstNI CCWGG 2 cut(s) 85, 116
BstNSI RCATGY 1 cut(s) 79
BstSCI CCNGG 2 cut(s) 83, 114
BstUI CGCG 2 cut(s) 65, 289
BstV1I GCAGC 3 cut(s) 6, 91, 218
BstV2I GAAGAC 1 cut(s) 254
Bsu15I ATCGAT 2 cut(s) 363, 410
BsuRI GGCC 1 cut(s) 285
BsuTUI ATCGAT 2 cut(s) 363, 410
BtgZI GCGATG 1 cut(s) 304
BtsI GCAGTG 1 cut(s) 446
BtsIMutI CAGTG 1 cut(s) 446
Cac8I GCNNGC 5 cut(s) 77, 204, 287, 307, 453
Cfr13I GGNCC 4 cut(s) 87, 284, 334, 368
ClaI ATCGAT 2 cut(s) 363, 410
CviAII CATG 5 cut(s) 24, 76, 244, 437, 470
CviJI RGCY 8 cut(s) 82, 95, 108, 209, 285, 300, 305, 421
CviKI_1 RGCY 8 cut(s) 82, 95, 108, 209, 285, 300, 305, 421
DdeI CTNAG 2 cut(s) 50, 135
DraIII CACNNNGTG 2 cut(s) 16, 452
Eco130I CCWWGG 1 cut(s) 280
Eco47I GGWCC 3 cut(s) 87, 334, 368
EcoNI CCTNNNNNAGG 2 cut(s) 116, 119
EcoRII CCWGG 2 cut(s) 83, 114
EcoT14I CCWWGG 1 cut(s) 280
ErhI CCWWGG 1 cut(s) 280
FaeI CATG 5 cut(s) 27, 79, 247, 440, 473
FaiI YATR 8 cut(s) 25, 77, 154, 156, 245, 407, 438, 471
FaqI GGGAC 1 cut(s) 354
FatI CATG 5 cut(s) 23, 75, 243, 436, 469
FauI CCCGC 1 cut(s) 294
Fnu4HI GCNGC 3 cut(s) 20, 80, 207
Fsp4HI GCNGC 3 cut(s) 20, 80, 207
GluI GCNGC 3 cut(s) 20, 80, 207
GsuI CTGGAG 2 cut(s) 137, 231
HaeIII GGCC 1 cut(s) 285
Hin1II CATG 5 cut(s) 27, 79, 247, 440, 473
HindIII AAGCTT 1 cut(s) 303
HinfI GANTC 1 cut(s) 443
HphI GGTGA 1 cut(s) 266
Hpy188I TCNGA 1 cut(s) 328
Hpy188III TCNNGA 1 cut(s) 371
Hpy99I CGWCG 1 cut(s) 392
HpyAV CCTTC 2 cut(s) 34, 200
HpyCH4III ACNGT 1 cut(s) 272
HpyCH4V TGCA 3 cut(s) 79, 148, 309
HpyF10VI GCNNNNNNNGC 2 cut(s) 203, 306
HpyF3I CTNAG 2 cut(s) 50, 135
Hsp92II CATG 5 cut(s) 27, 79, 247, 440, 473
LmnI GCTCC 2 cut(s) 72, 192
LpnPI CCDG 8 cut(s) 70, 97, 101, 103, 128, 195, 266, 407
Lsp1109I GCAGC 3 cut(s) 6, 91, 218
LweI GCATC 1 cut(s) 36
MaeIII GTNAC 3 cut(s) 26, 214, 272
MboII GAAGA 1 cut(s) 259
MluCI AATT 4 cut(s) 35, 54, 322, 382
MmeI TCCRAC 1 cut(s) 258
MnlI CCTC 5 cut(s) 112, 115, 122, 347, 394
MseI TTAA 2 cut(s) 167, 481
MslI CAYNNNNRTG 1 cut(s) 101
MspA1I CMGCKG 1 cut(s) 209
MspR9I CCNGG 2 cut(s) 85, 116
MvaI CCWGG 2 cut(s) 85, 116
MvnI CGCG 2 cut(s) 65, 289
MwoI GCNNNNNNNGC 2 cut(s) 203, 306
NlaIII CATG 5 cut(s) 27, 79, 247, 440, 473
NlaIV GGNNCC 1 cut(s) 370
NmuCI GTSAC 2 cut(s) 26, 272
NspI RCATGY 1 cut(s) 79
NspV TTCGAA 1 cut(s) 416
PaeI GCATGC 1 cut(s) 79
PcsI WCGNNNNNNNCGW 3 cut(s) 369, 384, 396
PfeI GAWTC 1 cut(s) 443
PfoI TCCNGGA 1 cut(s) 114
PkrI GCNGC 3 cut(s) 21, 81, 208
Psp6I CCWGG 2 cut(s) 83, 114
PspGI CCWGG 2 cut(s) 83, 114
PspN4I GGNNCC 1 cut(s) 370
PspPI GGNCC 4 cut(s) 87, 284, 334, 368
PvuII CAGCTG 1 cut(s) 209
RseI CAYNNNNRTG 1 cut(s) 101
SaqAI TTAA 2 cut(s) 167, 481
SatI GCNGC 3 cut(s) 20, 80, 207
Sau96I GGNCC 4 cut(s) 87, 284, 334, 368
ScrFI CCNGG 2 cut(s) 85, 116
SetI ASST 6 cut(s) 110, 126, 211, 307, 423, 481
SfaNI GCATC 1 cut(s) 36
SfuI TTCGAA 1 cut(s) 416
SinI GGWCC 3 cut(s) 87, 334, 368
SmiMI CAYNNNNRTG 1 cut(s) 101
SphI GCATGC 1 cut(s) 79
Sse9I AATT 4 cut(s) 35, 54, 322, 382
SsiI CCGC 2 cut(s) 65, 287
StyD4I CCNGG 2 cut(s) 83, 114
StyI CCWWGG 1 cut(s) 280
TaaI ACNGT 1 cut(s) 272
TaqI TCGA 7 cut(s) 345, 352, 363, 387, 399, 410, 416
TasI AATT 4 cut(s) 35, 54, 322, 382
TfiI GAWTC 1 cut(s) 443
Tru1I TTAA 2 cut(s) 167, 481
Tru9I TTAA 2 cut(s) 167, 481
TscAI CASTG 1 cut(s) 453
TseFI GTSAC 2 cut(s) 26, 272
TseI GCWGC 3 cut(s) 19, 79, 206
Tsp45I GTSAC 2 cut(s) 26, 272
TspDTI ATGAA 2 cut(s) 260, 456
TspGWI ACGGA 4 cut(s) 85, 233, 393, 405
TspRI CASTG 1 cut(s) 453
VpaK11BI GGWCC 3 cut(s) 87, 334, 368
XagI CCTNNNNNAGG 2 cut(s) 116, 119
XapI RAATTY 1 cut(s) 382
XceI RCATGY 1 cut(s) 79
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.