Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003767.1

Orthogroup ID

OG0023540

Physical Location & Seq

Genomic Coordinates Reverse (-)

15516 .. 16124

Gene Structure 609 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

atggattcatcccaaataccatcatcatctctttcttcaaatggaaccgttgagtatcgcaattctgtcttggccgcatttgatcgggagcaagatttgttacttcatatgtgtgctaacaacaatctcctattagcagaaaatctcgacagcgaagaagatgatgctcaatcatgccggagaggtgcaattcctggtcaaatagttgtttatcatgatcgagaagctgctgcacacaatttgtttacggattatttcgcagaggtcccccgatttggtgagctaaaatttcgcagacgttttcaaatgagtaaaagtttattttatcggattgctgatgcggtcaaaaatcatgacaatttctttatgcaacaacgtgatggaattggtaggttcggattttcatcctttgtaaaaatcacagctgtttttcgaatgcttacatatgatgtaccagctgattctctcgatgaatacttaaaaattggtgagtccacagcaattagatgcatgaaaaagttttgtcaggctattgtagaaatatttggagagcaatatctcagaaaaccaacaactattgatgttgcaagactcgtccacagcaattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Plant_tran

Protein Analysis

202

Amino Acids

23.1

Weight (kDa)

5.96

Isoelectric Point (pI)

41.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0023540)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0003767.1_g000004
rosa_roxburghii	Rroxscaffold_1G00035000 Rroxscaffold_2G00084180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	75, 341
AcoI	YGGCCR	1 cut(s)	72
AcsI	RAATTY	1 cut(s)	287
AfaI	GTAC	1 cut(s)	453
AfiI	CCNNNNNNNGG	1 cut(s)	275
AgsI	TTSAA	2 cut(s)	39, 305
AjnI	CCWGG	1 cut(s)	193
AluBI	AGCT	4 cut(s)	227, 283, 425, 458
AluI	AGCT	4 cut(s)	227, 283, 425, 458
AoxI	GGCC	1 cut(s)	72
ApeKI	GCWGC	2 cut(s)	227, 230
ApoI	RAATTY	1 cut(s)	287
AspS9I	GGNCC	1 cut(s)	265
AsuHPI	GGTGA	2 cut(s)	290, 500
AsuII	TTCGAA	1 cut(s)	433
AvaII	GGWCC	1 cut(s)	265
BbvI	GCAGC	2 cut(s)	214, 217
BccI	CCATC	2 cut(s)	28, 374
BciT130I	CCWGG	1 cut(s)	195
BisI	GCNGC	3 cut(s)	75, 228, 231
BlsI	GCNGC	3 cut(s)	76, 229, 232
Bme1390I	CCNGG	1 cut(s)	195
Bme18I	GGWCC	1 cut(s)	265
BmgT120I	GGNCC	1 cut(s)	265
BmiI	GGNNCC	2 cut(s)	46, 267
BmrFI	CCNGG	1 cut(s)	195
BmsI	GCATC	3 cut(s)	154, 328, 497
Bpu14I	TTCGAA	1 cut(s)	433
BsaBI	GATNNNNATC	1 cut(s)	403
Bsc4I	CCNNNNNNNGG	1 cut(s)	275
Bse8I	GATNNNNATC	1 cut(s)	403
BseBI	CCWGG	1 cut(s)	195
BseGI	GGATG	2 cut(s)	8, 404
BseJI	GATNNNNATC	1 cut(s)	403
BseLI	CCNNNNNNNGG	1 cut(s)	275
BseMII	CTCAG	1 cut(s)	574
BseXI	GCAGC	2 cut(s)	214, 217
BsgI	GTGCAG	1 cut(s)	216
BshFI	GGCC	1 cut(s)	74
BsiSI	CCGG	1 cut(s)	178
BslFI	GGGAC	1 cut(s)	251
BslI	CCNNNNNNNGG	1 cut(s)	275
BsmFI	GGGAC	1 cut(s)	251
BsmI	GAATGC	1 cut(s)	441
BsnI	GGCC	1 cut(s)	74
Bsp119I	TTCGAA	1 cut(s)	433
Bsp143I	GATC	2 cut(s)	82, 217
BspACI	CCGC	2 cut(s)	75, 341
BspANI	GGCC	1 cut(s)	74
BspCNI	CTCAG	1 cut(s)	573
BspHI	TCATGA	2 cut(s)	214, 352
BspLI	GGNNCC	2 cut(s)	46, 267
BspT104I	TTCGAA	1 cut(s)	433
BssMI	GATC	2 cut(s)	82, 217
Bst2UI	CCWGG	1 cut(s)	195
Bst4CI	ACNGT	1 cut(s)	49
BstBI	TTCGAA	1 cut(s)	433
BstDEI	CTNAG	1 cut(s)	560
BstF5I	GGATG	2 cut(s)	8, 404
BstKTI	GATC	2 cut(s)	85, 220
BstMBI	GATC	2 cut(s)	82, 217
BstNI	CCWGG	1 cut(s)	195
BstSCI	CCNGG	1 cut(s)	193
BstV1I	GCAGC	2 cut(s)	214, 217
BsuRI	GGCC	1 cut(s)	74
BtsCI	GGATG	2 cut(s)	8, 404
CciI	TCATGA	2 cut(s)	214, 352
Cfr13I	GGNCC	1 cut(s)	265
Csp6I	GTAC	1 cut(s)	452
CviAII	CATG	4 cut(s)	174, 215, 353, 511
CviJI	RGCY	6 cut(s)	74, 227, 283, 425, 458, 530
CviKI_1	RGCY	6 cut(s)	74, 227, 283, 425, 458, 530
CviQI	GTAC	1 cut(s)	452
DdeI	CTNAG	1 cut(s)	560
DpnI	GATC	2 cut(s)	84, 219
DpnII	GATC	2 cut(s)	82, 217
EaeI	YGGCCR	1 cut(s)	72
Eco47I	GGWCC	1 cut(s)	265
EcoO109I	RGGNCCY	1 cut(s)	265
EcoRII	CCWGG	1 cut(s)	193
EcoT22I	ATGCAT	1 cut(s)	512
FaeI	CATG	4 cut(s)	177, 218, 356, 514
FaiI	YATR	9 cut(s)	108, 110, 175, 216, 354, 368, 445, 447, 512
FaqI	GGGAC	1 cut(s)	251
FatI	CATG	4 cut(s)	173, 214, 352, 510
FauNDI	CATATG	2 cut(s)	108, 445
Fnu4HI	GCNGC	3 cut(s)	75, 228, 231
FokI	GGATG	1 cut(s)	391
Fsp4HI	GCNGC	3 cut(s)	75, 228, 231
GluI	GCNGC	3 cut(s)	75, 228, 231
HaeIII	GGCC	1 cut(s)	74
HapII	CCGG	1 cut(s)	178
Hin1II	CATG	4 cut(s)	177, 218, 356, 514
HinfI	GANTC	4 cut(s)	5, 461, 491, 591
HpaII	CCGG	1 cut(s)	178
HphI	GGTGA	2 cut(s)	290, 500
Hpy166II	GTNNAC	3 cut(s)	246, 495, 598
Hpy188I	TCNGA	3 cut(s)	330, 398, 563
Hpy188III	TCNNGA	6 cut(s)	86, 146, 215, 221, 353, 467
Hpy8I	GTNNAC	3 cut(s)	246, 495, 598
HpyCH4III	ACNGT	1 cut(s)	49
HpyCH4IV	ACGT	2 cut(s)	298, 376
HpyCH4V	TGCA	5 cut(s)	188, 233, 370, 510, 587
HpyF3I	CTNAG	1 cut(s)	560
HpySE526I	ACGT	2 cut(s)	298, 376
Hsp92II	CATG	4 cut(s)	177, 218, 356, 514
Kzo9I	GATC	2 cut(s)	82, 217
LmnI	GCTCC	1 cut(s)	88
LpnPI	CCDG	5 cut(s)	180, 191, 207, 468, 512
Lsp1109I	GCAGC	2 cut(s)	214, 217
LweI	GCATC	3 cut(s)	154, 328, 497
MaeII	ACGT	2 cut(s)	298, 376
MaeIII	GTNAC	1 cut(s)	99
MalI	GATC	2 cut(s)	84, 219
MboI	GATC	2 cut(s)	82, 217
MboII	GAAGA	3 cut(s)	27, 167, 170
MluCI	AATT	9 cut(s)	61, 189, 238, 287, 358, 384, 483, 501, 604
MlyI	GAGTC	2 cut(s)	500, 585
MnlI	CCTC	2 cut(s)	176, 256
Mph1103I	ATGCAT	1 cut(s)	512
MseI	TTAA	1 cut(s)	479
MslI	CAYNNNNRTG	1 cut(s)	111
MspA1I	CMGCKG	2 cut(s)	425, 458
MspI	CCGG	1 cut(s)	178
MspR9I	CCNGG	1 cut(s)	195
Mva1269I	GAATGC	1 cut(s)	441
MvaI	CCWGG	1 cut(s)	195
NdeI	CATATG	2 cut(s)	108, 445
NdeII	GATC	2 cut(s)	82, 217
NlaIII	CATG	4 cut(s)	177, 218, 356, 514
NlaIV	GGNNCC	2 cut(s)	46, 267
NsiI	ATGCAT	1 cut(s)	512
NspV	TTCGAA	1 cut(s)	433
PagI	TCATGA	2 cut(s)	214, 352
PctI	GAATGC	1 cut(s)	441
PfeI	GAWTC	2 cut(s)	5, 461
PkrI	GCNGC	3 cut(s)	76, 229, 232
PleI	GAGTC	2 cut(s)	499, 585
PpsI	GAGTC	2 cut(s)	499, 585
PpuMI	RGGWCCY	1 cut(s)	265
Psp5II	RGGWCCY	1 cut(s)	265
Psp6I	CCWGG	1 cut(s)	193
PspGI	CCWGG	1 cut(s)	193
PspN4I	GGNNCC	2 cut(s)	46, 267
PspPI	GGNCC	1 cut(s)	265
PspPPI	RGGWCCY	1 cut(s)	265
PvuII	CAGCTG	2 cut(s)	425, 458
RsaI	GTAC	1 cut(s)	453
RsaNI	GTAC	1 cut(s)	452
RseI	CAYNNNNRTG	1 cut(s)	111
SaqAI	TTAA	1 cut(s)	479
SatI	GCNGC	3 cut(s)	75, 228, 231
Sau3AI	GATC	2 cut(s)	82, 217
Sau96I	GGNCC	1 cut(s)	265
SchI	GAGTC	2 cut(s)	500, 585
ScrFI	CCNGG	1 cut(s)	195
SetI	ASST	9 cut(s)	187, 229, 267, 285, 301, 379, 395, 427, 460
SfaNI	GCATC	3 cut(s)	154, 328, 497
SfuI	TTCGAA	1 cut(s)	433
SinI	GGWCC	1 cut(s)	265
SmiMI	CAYNNNNRTG	1 cut(s)	111
Sse9I	AATT	9 cut(s)	61, 189, 238, 287, 358, 384, 483, 501, 604
SsiI	CCGC	2 cut(s)	75, 341
SspI	AATATT	1 cut(s)	543
StyD4I	CCNGG	1 cut(s)	193
TaaI	ACNGT	1 cut(s)	49
TaiI	ACGT	2 cut(s)	301, 379
TaqI	TCGA	4 cut(s)	147, 220, 433, 468
TasI	AATT	9 cut(s)	61, 189, 238, 287, 358, 384, 483, 501, 604
TauI	GCSGC	1 cut(s)	77
TfiI	GAWTC	2 cut(s)	5, 461
Tru1I	TTAA	1 cut(s)	479
Tru9I	TTAA	1 cut(s)	479
TseI	GCWGC	2 cut(s)	227, 230
TspDTI	ATGAA	4 cut(s)	95, 393, 486, 527
TspGWI	ACGGA	1 cut(s)	263
VpaK11BI	GGWCC	1 cut(s)	265
XapI	RAATTY	1 cut(s)	287
Zsp2I	ATGCAT	1 cut(s)	512

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.