Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003826.1

Orthogroup ID

OG0021420

Physical Location & Seq

Genomic Coordinates Reverse (-)

23495 .. 24376

Gene Structure 882 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003826.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 279 bp

atgtttctgatccacattggcttctgcatctttgctgcggttgctccccctataatgttcaaaggaaaatccttcattggcattctggctgcaattgatgttcgaagtgatcatgctttggttaggttgttctactgtattggattcggcatgttctgtctttactcacacttgcttcttgatttctataatacctttttctctttacatgtgcagcaagtatacatgtacgtcccgggaagtggtaaagctgctaaaatgaagcgtaagggagcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005794 GO:0005802 GO:0005886 GO:0006810 GO:0006897 GO:0006898 GO:0008150 GO:0012505 GO:0016020 GO:0016192 GO:0031410 GO:0031982 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0071944 GO:0097708 GO:0098657 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SCAMP

Protein Analysis

92

Amino Acids

10.36

Weight (kDa)

9.51

Isoelectric Point (pI)

45.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0021420)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0007161
rosa_multiflora	Rmu_sc0003826.1_g000002
rosa_rugosa	Rorug04G0426600
rosa_samantha	Rh5AG054400 Rh5CG062200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	222
AciI	CCGC	1 cut(s)	38
AclWI	GGATC	1 cut(s)	4
AfaI	GTAC	1 cut(s)	230
AfiI	CCNNNNNNNGG	1 cut(s)	242
AflIII	ACRYGT	2 cut(s)	208, 225
AgsI	TTSAA	1 cut(s)	61
AluBI	AGCT	1 cut(s)	251
AluI	AGCT	1 cut(s)	251
AlwI	GGATC	1 cut(s)	4
Ama87I	CYCGRG	1 cut(s)	235
ApeKI	GCWGC	4 cut(s)	35, 89, 214, 251
AsuC2I	CCSGG	2 cut(s)	236, 237
AsuII	TTCGAA	1 cut(s)	103
AvaI	CYCGRG	1 cut(s)	235
BbvI	GCAGC	4 cut(s)	22, 76, 226, 238
BclI	TGATCA	1 cut(s)	109
BcnI	CCSGG	2 cut(s)	236, 237
BisI	GCNGC	4 cut(s)	36, 90, 215, 252
BlsI	GCNGC	4 cut(s)	37, 91, 216, 253
Bme1390I	CCNGG	2 cut(s)	236, 237
BmeT110I	CYCGRG	1 cut(s)	235
BmrFI	CCNGG	2 cut(s)	236, 237
BmsI	GCATC	1 cut(s)	36
Bpu14I	TTCGAA	1 cut(s)	103
BpuMI	CCSGG	2 cut(s)	236, 237
BsaJI	CCNNGG	1 cut(s)	235
Bsc4I	CCNNNNNNNGG	1 cut(s)	242
BseDI	CCNNGG	1 cut(s)	235
BseLI	CCNNNNNNNGG	1 cut(s)	242
BseXI	GCAGC	4 cut(s)	22, 76, 226, 238
BsgI	GTGCAG	1 cut(s)	233
BsiHKCI	CYCGRG	1 cut(s)	235
BsiSI	CCGG	1 cut(s)	236
BslFI	GGGAC	1 cut(s)	218
BslI	CCNNNNNNNGG	1 cut(s)	242
BsmFI	GGGAC	1 cut(s)	218
BsmI	GAATGC	1 cut(s)	81
BsoBI	CYCGRG	1 cut(s)	235
Bsp119I	TTCGAA	1 cut(s)	103
Bsp143I	GATC	2 cut(s)	9, 109
BspACI	CCGC	1 cut(s)	38
BspPI	GGATC	1 cut(s)	4
BspT104I	TTCGAA	1 cut(s)	103
BssECI	CCNNGG	1 cut(s)	235
BssMI	GATC	2 cut(s)	9, 109
BssNAI	GTATAC	1 cut(s)	223
Bst1107I	GTATAC	1 cut(s)	223
Bst4CI	ACNGT	1 cut(s)	137
BstBI	TTCGAA	1 cut(s)	103
BstKTI	GATC	2 cut(s)	12, 112
BstMBI	GATC	2 cut(s)	9, 109
BstMWI	GCNNNNNNNGC	1 cut(s)	41
BstNSI	RCATGY	3 cut(s)	154, 212, 229
BstSCI	CCNGG	2 cut(s)	234, 235
BstV1I	GCAGC	4 cut(s)	22, 76, 226, 238
BstZ17I	GTATAC	1 cut(s)	223
Cfr9I	CCCGGG	1 cut(s)	235
Csp6I	GTAC	1 cut(s)	229
CviAII	CATG	5 cut(s)	113, 151, 209, 226, 276
CviJI	RGCY	3 cut(s)	21, 89, 251
CviKI_1	RGCY	3 cut(s)	21, 89, 251
CviQI	GTAC	1 cut(s)	229
DpnI	GATC	2 cut(s)	11, 111
DpnII	GATC	2 cut(s)	9, 109
Eco88I	CYCGRG	1 cut(s)	235
FaeI	CATG	5 cut(s)	116, 154, 212, 229, 279
FaiI	YATR	8 cut(s)	53, 114, 152, 189, 210, 223, 227, 277
FaqI	GGGAC	1 cut(s)	218
FatI	CATG	5 cut(s)	112, 150, 208, 225, 275
FbaI	TGATCA	1 cut(s)	109
FblI	GTMKAC	1 cut(s)	222
Fnu4HI	GCNGC	4 cut(s)	36, 90, 215, 252
Fsp4HI	GCNGC	4 cut(s)	36, 90, 215, 252
GluI	GCNGC	4 cut(s)	36, 90, 215, 252
HapII	CCGG	1 cut(s)	236
Hin1II	CATG	5 cut(s)	116, 154, 212, 229, 279
HinfI	GANTC	1 cut(s)	144
HpaII	CCGG	1 cut(s)	236
Hpy166II	GTNNAC	1 cut(s)	223
Hpy188I	TCNGA	1 cut(s)	9
Hpy188III	TCNNGA	1 cut(s)	179
Hpy8I	GTNNAC	1 cut(s)	223
HpyAV	CCTTC	1 cut(s)	82
HpyCH4III	ACNGT	1 cut(s)	137
HpyCH4IV	ACGT	1 cut(s)	231
HpyCH4V	TGCA	3 cut(s)	27, 92, 214
HpyF10VI	GCNNNNNNNGC	1 cut(s)	41
HpySE526I	ACGT	1 cut(s)	231
Hsp92II	CATG	5 cut(s)	116, 154, 212, 229, 279
Ksp22I	TGATCA	1 cut(s)	109
Kzo9I	GATC	2 cut(s)	9, 109
LmnI	GCTCC	2 cut(s)	49, 272
LpnPI	CCDG	2 cut(s)	71, 249
Lsp1109I	GCAGC	4 cut(s)	22, 76, 226, 238
LweI	GCATC	1 cut(s)	36
MaeII	ACGT	1 cut(s)	231
MalI	GATC	2 cut(s)	11, 111
MboI	GATC	2 cut(s)	9, 109
MfeI	CAATTG	1 cut(s)	93
MluCI	AATT	1 cut(s)	93
MspI	CCGG	1 cut(s)	236
MspR9I	CCNGG	2 cut(s)	236, 237
MunI	CAATTG	1 cut(s)	93
Mva1269I	GAATGC	1 cut(s)	81
MwoI	GCNNNNNNNGC	1 cut(s)	41
NciI	CCSGG	2 cut(s)	236, 237
NdeII	GATC	2 cut(s)	9, 109
NlaIII	CATG	5 cut(s)	116, 154, 212, 229, 279
NspI	RCATGY	3 cut(s)	154, 212, 229
NspV	TTCGAA	1 cut(s)	103
PciI	ACATGT	2 cut(s)	208, 225
PctI	GAATGC	1 cut(s)	81
PfeI	GAWTC	1 cut(s)	144
PkrI	GCNGC	4 cut(s)	37, 91, 216, 253
PscI	ACATGT	2 cut(s)	208, 225
RsaI	GTAC	1 cut(s)	230
RsaNI	GTAC	1 cut(s)	229
SatI	GCNGC	4 cut(s)	36, 90, 215, 252
Sau3AI	GATC	2 cut(s)	9, 109
ScrFI	CCNGG	2 cut(s)	236, 237
SetI	ASST	4 cut(s)	128, 197, 234, 253
SfaNI	GCATC	1 cut(s)	36
SfuI	TTCGAA	1 cut(s)	103
SmaI	CCCGGG	1 cut(s)	237
Sse9I	AATT	1 cut(s)	93
SsiI	CCGC	1 cut(s)	38
StyD4I	CCNGG	2 cut(s)	234, 235
TaaI	ACNGT	1 cut(s)	137
TaiI	ACGT	1 cut(s)	234
TaqI	TCGA	1 cut(s)	103
TasI	AATT	1 cut(s)	93
TfiI	GAWTC	1 cut(s)	144
TseI	GCWGC	4 cut(s)	35, 89, 214, 251
TspDTI	ATGAA	2 cut(s)	64, 275
TspMI	CCCGGG	1 cut(s)	235
XceI	RCATGY	3 cut(s)	154, 212, 229
XmaI	CCCGGG	1 cut(s)	235
XmiI	GTMKAC	1 cut(s)	222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.