Rh5AG054400

Secretory carrier-associated membrane protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0021420
Physical Location & Seq
Forward (+)
4722607 .. 4724964
2358 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG054400.1

Sequence Viewer

Length: 627 bp
ATGCCGAGAATTTCCTTGGGCTCCGGGATTGGTGTTCTGGGAGGGGCCGGCTTGTGCATCTCTCTCTTCTATTCAGCTTCCATCCAGGCCAAGGCGGTGCGCCTCGATCGAGTTCGATTTCTTCACAAGAAAAAGCAGGCCGAGCTGGCGGAGATGCGAGCCGTGAGGGCTGAGGAGCGGGCGGTCAGGGAGGAGGAACGGGCCGTAAGGGCAGAGGAGCTGGCGGTCAGGAGGAGGAGCGGGCCGTCTGAGAGTGCTTTGAAGTACCGATGGTTTTTCATGTTTCTGGTAATGTTGTCTCAGATTTCTTTGAAGAGGAGGAAGTCAATCCGTTCTCGGTCTGAGAGTGCTTTGAAGTACAGATGGTTTTTCATGTTTCCGATCCACATTGGCTTCTGCATCTTTGCTGCGGTTGCTCCCCCTATAATGTTCAAAGGAAAATCTCTCATTGGCATTCTGGCTGCAATTGATGTTCGAAGTGATCATGCTTTGGTTAGGTTGTTCTACTGTATTGGATTCGGCATGTTCTGTCTTGAATCAGTGCTTAGCATCTGGATTATTCAGCAAGTATACATGTACGTCCCGGGAAGTGGTAAAGCTGCTAAAATGAAGGGTAAGGGAGCATGA

Protein Analysis

208

Amino Acids

23.48

Weight (kDa)

10.43

Isoelectric Point (pI)

60.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SCAMP PF04144 113 - 194 5.3e-14 SCAMP family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0021420)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0007161
rosa_multiflora Rmu_sc0003826.1_g000002
rosa_rugosa Rorug04G0426600
rosa_samantha Rh5AG054400 Rh5CG062200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 178, 240
AccI GTMKAC 1 cut(s) 570
AciI CCGC 7 cut(s) 95, 149, 178, 182, 224, 240, 410
AclWI GGATC 1 cut(s) 376
AcsI RAATTY 1 cut(s) 9
AfaI GTAC 3 cut(s) 266, 359, 578
AfiI CCNNNNNNNGG 2 cut(s) 91, 590
AflIII ACRYGT 1 cut(s) 573
AgsI TTSAA 5 cut(s) 262, 313, 355, 433, 536
AjnI CCWGG 1 cut(s) 84
AluBI AGCT 4 cut(s) 77, 145, 220, 599
AluI AGCT 4 cut(s) 77, 145, 220, 599
Alw26I GTCTC 1 cut(s) 303
AlwI GGATC 1 cut(s) 376
Ama87I CYCGRG 1 cut(s) 583
AoxI GGCC 5 cut(s) 45, 87, 138, 201, 242
ApeKI GCWGC 3 cut(s) 407, 461, 599
ApoI RAATTY 1 cut(s) 9
AspLEI GCGC 1 cut(s) 102
AspS9I GGNCC 3 cut(s) 45, 201, 242
AsuC2I CCSGG 3 cut(s) 25, 584, 585
AsuII TTCGAA 1 cut(s) 475
AvaI CYCGRG 1 cut(s) 583
BanII GRGCYC 1 cut(s) 23
BbvCI CCTCAGC 1 cut(s) 171
BbvI GCAGC 3 cut(s) 394, 448, 586
BccI CCATC 3 cut(s) 89, 264, 357
BceAI ACGGC 3 cut(s) 146, 188, 229
BciT130I CCWGG 1 cut(s) 86
BclI TGATCA 1 cut(s) 481
BcnI CCSGG 3 cut(s) 25, 584, 585
BcoDI GTCTC 1 cut(s) 303
BglI GCCNNNNNGGC 3 cut(s) 146, 167, 209
BisI GCNGC 3 cut(s) 408, 462, 600
BlpI GCTNAGC 1 cut(s) 545
BlsI GCNGC 3 cut(s) 409, 463, 601
Bme1390I CCNGG 4 cut(s) 25, 86, 584, 585
BmeT110I CYCGRG 1 cut(s) 583
BmgT120I GGNCC 3 cut(s) 45, 201, 242
BmiI GGNNCC 2 cut(s) 22, 46
BmrFI CCNGG 4 cut(s) 25, 86, 584, 585
BmsI GCATC 4 cut(s) 66, 144, 408, 558
Bpu10I CCTNAGC 1 cut(s) 171
Bpu1102I GCTNAGC 1 cut(s) 545
Bpu14I TTCGAA 1 cut(s) 475
BpuMI CCSGG 3 cut(s) 25, 584, 585
BsaJI CCNNGG 3 cut(s) 15, 90, 583
Bsc4I CCNNNNNNNGG 2 cut(s) 91, 590
Bse118I RCCGGY 1 cut(s) 47
BseBI CCWGG 1 cut(s) 86
BseDI CCNNGG 3 cut(s) 15, 90, 583
BseGI GGATG 1 cut(s) 81
BseLI CCNNNNNNNGG 2 cut(s) 91, 590
BseMII CTCAG 4 cut(s) 162, 240, 314, 333
BseRI GAGGAG 6 cut(s) 188, 206, 230, 247, 250, 331
BseXI GCAGC 3 cut(s) 394, 448, 586
Bsh1285I CGRYCG 1 cut(s) 109
BshFI GGCC 5 cut(s) 47, 89, 140, 203, 244
BsiEI CGRYCG 1 cut(s) 109
BsiHKCI CYCGRG 1 cut(s) 583
BsiSI CCGG 3 cut(s) 24, 48, 584
BslFI GGGAC 1 cut(s) 566
BslI CCNNNNNNNGG 2 cut(s) 91, 590
BsmAI GTCTC 1 cut(s) 303
BsmFI GGGAC 1 cut(s) 566
BsmI GAATGC 1 cut(s) 453
BsnI GGCC 5 cut(s) 47, 89, 140, 203, 244
BsoBI CYCGRG 1 cut(s) 583
Bsp119I TTCGAA 1 cut(s) 475
Bsp1286I GDGCHC 1 cut(s) 23
Bsp143I GATC 3 cut(s) 106, 381, 481
Bsp1720I GCTNAGC 1 cut(s) 545
BspACI CCGC 7 cut(s) 95, 149, 178, 182, 224, 240, 410
BspANI GGCC 5 cut(s) 47, 89, 140, 203, 244
BspCNI CTCAG 4 cut(s) 163, 241, 313, 334
BspLI GGNNCC 2 cut(s) 22, 46
BspPI GGATC 1 cut(s) 376
BspT104I TTCGAA 1 cut(s) 475
BsrBI CCGCTC 2 cut(s) 178, 240
BsrFI RCCGGY 1 cut(s) 47
BssAI RCCGGY 1 cut(s) 47
BssECI CCNNGG 3 cut(s) 15, 90, 583
BssMI GATC 3 cut(s) 106, 381, 481
BssNAI GTATAC 1 cut(s) 571
BssT1I CCWWGG 2 cut(s) 15, 90
Bst1107I GTATAC 1 cut(s) 571
Bst2UI CCWGG 1 cut(s) 86
Bst4CI ACNGT 1 cut(s) 509
Bst6I CTCTTC 2 cut(s) 71, 308
BstBI TTCGAA 1 cut(s) 475
BstC8I GCNNGC 7 cut(s) 49, 138, 147, 159, 180, 222, 242
BstDEI CTNAG 5 cut(s) 171, 249, 300, 342, 545
BstF5I GGATG 1 cut(s) 81
BstHHI GCGC 1 cut(s) 102
BstKTI GATC 3 cut(s) 109, 384, 484
BstMAI GTCTC 1 cut(s) 303
BstMBI GATC 3 cut(s) 106, 381, 481
BstMCI CGRYCG 1 cut(s) 109
BstMWI GCNNNNNNNGC 5 cut(s) 142, 146, 167, 209, 413
BstNI CCWGG 1 cut(s) 86
BstNSI RCATGY 2 cut(s) 526, 577
BstSCI CCNGG 4 cut(s) 23, 84, 582, 583
BstV1I GCAGC 3 cut(s) 394, 448, 586
BstZ17I GTATAC 1 cut(s) 571
BsuRI GGCC 5 cut(s) 47, 89, 140, 203, 244
BtsCI GGATG 1 cut(s) 81
BtsIMutI CAGTG 1 cut(s) 546
Cac8I GCNNGC 7 cut(s) 49, 138, 147, 159, 180, 222, 242
CfoI GCGC 1 cut(s) 102
Cfr10I RCCGGY 1 cut(s) 47
Cfr13I GGNCC 3 cut(s) 45, 201, 242
Cfr9I CCCGGG 1 cut(s) 583
Csp6I GTAC 3 cut(s) 265, 358, 577
CviAII CATG 6 cut(s) 280, 373, 485, 523, 574, 624
CviQI GTAC 3 cut(s) 265, 358, 577
DdeI CTNAG 5 cut(s) 171, 249, 300, 342, 545
DpnI GATC 3 cut(s) 108, 383, 483
DpnII GATC 3 cut(s) 106, 381, 481
Eam1104I CTCTTC 2 cut(s) 71, 308
EarI CTCTTC 2 cut(s) 71, 308
EciI GGCGGA 1 cut(s) 164
Eco130I CCWWGG 2 cut(s) 15, 90
Eco24I GRGCYC 1 cut(s) 23
Eco88I CYCGRG 1 cut(s) 583
EcoRII CCWGG 1 cut(s) 84
EcoT14I CCWWGG 2 cut(s) 15, 90
EcoT38I GRGCYC 1 cut(s) 23
ErhI CCWWGG 2 cut(s) 15, 90
FaeI CATG 6 cut(s) 283, 376, 488, 526, 577, 627
FaiI YATR 8 cut(s) 281, 374, 425, 486, 524, 571, 575, 625
FaqI GGGAC 1 cut(s) 566
FatI CATG 6 cut(s) 279, 372, 484, 522, 573, 623
FauI CCCGC 2 cut(s) 171, 233
FbaI TGATCA 1 cut(s) 481
FblI GTMKAC 1 cut(s) 570
Fnu4HI GCNGC 3 cut(s) 408, 462, 600
FokI GGATG 1 cut(s) 68
FriOI GRGCYC 1 cut(s) 23
Fsp4HI GCNGC 3 cut(s) 408, 462, 600
GlaI GCGC 1 cut(s) 101
GluI GCNGC 3 cut(s) 408, 462, 600
HaeIII GGCC 5 cut(s) 47, 89, 140, 203, 244
HapII CCGG 3 cut(s) 24, 48, 584
HhaI GCGC 1 cut(s) 102
Hin1II CATG 6 cut(s) 283, 376, 488, 526, 577, 627
Hin6I GCGC 1 cut(s) 100
HinP1I GCGC 1 cut(s) 100
HinfI GANTC 2 cut(s) 516, 536
HpaII CCGG 3 cut(s) 24, 48, 584
Hpy166II GTNNAC 1 cut(s) 571
Hpy188I TCNGA 4 cut(s) 250, 303, 343, 381
Hpy188III TCNNGA 3 cut(s) 229, 533, 553
Hpy8I GTNNAC 1 cut(s) 571
HpyAV CCTTC 1 cut(s) 604
HpyCH4III ACNGT 1 cut(s) 509
HpyCH4IV ACGT 1 cut(s) 579
HpyCH4V TGCA 3 cut(s) 57, 399, 464
HpyF10VI GCNNNNNNNGC 5 cut(s) 142, 146, 167, 209, 413
HpyF3I CTNAG 5 cut(s) 171, 249, 300, 342, 545
HpySE526I ACGT 1 cut(s) 579
Hsp92II CATG 6 cut(s) 283, 376, 488, 526, 577, 627
HspAI GCGC 1 cut(s) 100
KroI GCCGGC 1 cut(s) 47
KroNI GCCGGC 1 cut(s) 49
Ksp22I TGATCA 1 cut(s) 481
Kzo9I GATC 3 cut(s) 106, 381, 481
LmnI GCTCC 6 cut(s) 26, 175, 217, 237, 421, 620
Lsp1109I GCAGC 3 cut(s) 394, 448, 586
LweI GCATC 4 cut(s) 66, 144, 408, 558
MaeII ACGT 1 cut(s) 579
MalI GATC 3 cut(s) 108, 383, 483
MbiI CCGCTC 2 cut(s) 178, 240
MboI GATC 3 cut(s) 106, 381, 481
MboII GAAGA 3 cut(s) 58, 113, 325
MfeI CAATTG 1 cut(s) 465
MhlI GDGCHC 1 cut(s) 23
MluCI AATT 2 cut(s) 9, 465
MroNI GCCGGC 1 cut(s) 47
MspI CCGG 3 cut(s) 24, 48, 584
MspR9I CCNGG 4 cut(s) 25, 86, 584, 585
MunI CAATTG 1 cut(s) 465
Mva1269I GAATGC 1 cut(s) 453
MvaI CCWGG 1 cut(s) 86
MwoI GCNNNNNNNGC 5 cut(s) 142, 146, 167, 209, 413
NaeI GCCGGC 1 cut(s) 49
NciI CCSGG 3 cut(s) 25, 584, 585
NdeII GATC 3 cut(s) 106, 381, 481
NgoMIV GCCGGC 1 cut(s) 47
NlaIII CATG 6 cut(s) 283, 376, 488, 526, 577, 627
NlaIV GGNNCC 2 cut(s) 22, 46
NmeAIII GCCGAG 2 cut(s) 30, 166
NspI RCATGY 2 cut(s) 526, 577
NspV TTCGAA 1 cut(s) 475
PciI ACATGT 1 cut(s) 573
PctI GAATGC 1 cut(s) 453
PdiI GCCGGC 1 cut(s) 49
PfeI GAWTC 2 cut(s) 516, 536
PfoI TCCNGGA 1 cut(s) 23
PkrI GCNGC 3 cut(s) 409, 463, 601
Ple19I CGATCG 1 cut(s) 109
PscI ACATGT 1 cut(s) 573
Psp6I CCWGG 1 cut(s) 84
PspGI CCWGG 1 cut(s) 84
PspN4I GGNNCC 2 cut(s) 22, 46
PspPI GGNCC 3 cut(s) 45, 201, 242
PvuI CGATCG 1 cut(s) 109
RsaI GTAC 3 cut(s) 266, 359, 578
RsaNI GTAC 3 cut(s) 265, 358, 577
SatI GCNGC 3 cut(s) 408, 462, 600
Sau3AI GATC 3 cut(s) 106, 381, 481
Sau96I GGNCC 3 cut(s) 45, 201, 242
ScrFI CCNGG 4 cut(s) 25, 86, 584, 585
SduI GDGCHC 1 cut(s) 23
SetI ASST 6 cut(s) 79, 147, 222, 500, 582, 601
SfaNI GCATC 4 cut(s) 66, 144, 408, 558
SfuI TTCGAA 1 cut(s) 475
SmaI CCCGGG 1 cut(s) 585
Sse9I AATT 2 cut(s) 9, 465
SsiI CCGC 7 cut(s) 95, 149, 178, 182, 224, 240, 410
StyD4I CCNGG 4 cut(s) 23, 84, 582, 583
StyI CCWWGG 2 cut(s) 15, 90
TaaI ACNGT 1 cut(s) 509
TaiI ACGT 1 cut(s) 582
TaqI TCGA 4 cut(s) 105, 109, 115, 475
TaqII GACCGA 1 cut(s) 327
TasI AATT 2 cut(s) 9, 465
TatI WGTACW 1 cut(s) 357
TfiI GAWTC 2 cut(s) 516, 536
TscAI CASTG 1 cut(s) 546
TseI GCWGC 3 cut(s) 407, 461, 599
TspDTI ATGAA 3 cut(s) 268, 361, 623
TspGWI ACGGA 1 cut(s) 320
TspMI CCCGGG 1 cut(s) 583
TspRI CASTG 1 cut(s) 546
XapI RAATTY 1 cut(s) 9
XceI RCATGY 2 cut(s) 526, 577
XmaI CCCGGG 1 cut(s) 583
XmiI GTMKAC 1 cut(s) 570
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.