Rmu_sc0003832.1_g000015

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003832.1
OG0023099
Physical Location & Seq
Forward (+)
95881 .. 97041
1161 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003832.1_g000015.1.cds

Sequence Viewer

Length: 549 bp
atgccatgcaaaatatctccaccaatgagggataggcaccaaacccaacactcgctgggtggcattgtgggcgagcaagtggaggagctactcaacaaagaagagaacagggtgttgcttgatgggttggtcaaagcgtccgagagggtagagaatgccaaaagagaactcgctgagattgaaagacaagaacttgaggctaagcttgcaagggagtatattaacaaacttgaaaccagggcttctgaggtaccttctgtcaagcagaggtgggatttacagagcgttaggctttccagattggattcaggcaaactacgcttccgaagtgcccagcgctacgaattccggatcggattcggcaagtcctacgtcgtcgtcttgttctccgacgacgtcgcttcttggagaaagttcctcaaaccatgcaagaacccatttcgcgaagtgcccagcgctatgaattccggatctgatttggcaagttccatgtcgtcgtcttgttctccgatgacgtcgcttcttggagaaagttcagcaaaccaataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

182

Amino Acids

20.62

Weight (kDa)

9.03

Isoelectric Point (pI)

54.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0023099)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0003832.1_g000015 Rmu_sc0008051.1_g000006
rosa_samantha Rh7AG064500 Rh7CG083100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 399, 518
Acc65I GGTACC 1 cut(s) 250
AccB1I GGYRCC 2 cut(s) 36, 250
AccII CGCG 1 cut(s) 444
AccIII TCCGGA 2 cut(s) 348, 467
AclWI GGATC 2 cut(s) 359, 478
AcsI RAATTY 2 cut(s) 344, 463
AcyI GRCGYC 2 cut(s) 396, 515
AfaI GTAC 1 cut(s) 252
AfeI AGCGCT 2 cut(s) 338, 457
AgsI TTSAA 2 cut(s) 182, 233
AjnI CCWGG 1 cut(s) 236
AluBI AGCT 2 cut(s) 88, 205
AluI AGCT 2 cut(s) 88, 205
AlwI GGATC 2 cut(s) 359, 478
Aor13HI TCCGGA 2 cut(s) 348, 467
Aor51HI AGCGCT 2 cut(s) 338, 457
ApoI RAATTY 2 cut(s) 344, 463
Asp718I GGTACC 1 cut(s) 250
AspLEI GCGC 2 cut(s) 339, 458
BaeGI GKGCMC 2 cut(s) 334, 453
BanI GGYRCC 2 cut(s) 36, 250
BccI CCATC 1 cut(s) 116
BciT130I CCWGG 1 cut(s) 238
BfoI RGCGCY 2 cut(s) 340, 459
BlpI GCTNAGC 1 cut(s) 201
Bme1390I CCNGG 1 cut(s) 238
BmiI GGNNCC 2 cut(s) 38, 252
BmrFI CCNGG 1 cut(s) 238
Bpu1102I GCTNAGC 1 cut(s) 201
BpuEI CTTGAG 1 cut(s) 215
BsaHI GRCGYC 2 cut(s) 396, 515
BsaJI CCNNGG 1 cut(s) 237
BsaWI WCCGGW 2 cut(s) 348, 467
BseAI TCCGGA 2 cut(s) 348, 467
BseBI CCWGG 1 cut(s) 238
BseDI CCNNGG 1 cut(s) 237
BseMII CTCAG 2 cut(s) 165, 237
BseRI GAGGAG 1 cut(s) 98
BseSI GKGCMC 2 cut(s) 334, 453
BseYI CCCAGC 3 cut(s) 55, 333, 452
Bsh1236I CGCG 1 cut(s) 444
BshNI GGYRCC 2 cut(s) 36, 250
BsiSI CCGG 2 cut(s) 349, 468
BsmI GAATGC 1 cut(s) 160
Bsp1286I GDGCHC 2 cut(s) 334, 453
Bsp13I TCCGGA 2 cut(s) 348, 467
Bsp143I GATC 2 cut(s) 351, 470
Bsp1720I GCTNAGC 1 cut(s) 201
Bsp68I TCGCGA 1 cut(s) 444
BspCNI CTCAG 2 cut(s) 166, 238
BspEI TCCGGA 2 cut(s) 348, 467
BspFNI CGCG 1 cut(s) 444
BspLI GGNNCC 2 cut(s) 38, 252
BspPI GGATC 2 cut(s) 359, 478
BspT107I GGYRCC 2 cut(s) 36, 250
BssECI CCNNGG 1 cut(s) 237
BssMI GATC 2 cut(s) 351, 470
BssNI GRCGYC 2 cut(s) 396, 515
Bst2UI CCWGG 1 cut(s) 238
Bst6I CTCTTC 1 cut(s) 96
BstACI GRCGYC 2 cut(s) 396, 515
BstC8I GCNNGC 2 cut(s) 74, 207
BstDEI CTNAG 3 cut(s) 174, 201, 246
BstFNI CGCG 1 cut(s) 444
BstH2I RGCGCY 2 cut(s) 340, 459
BstHHI GCGC 2 cut(s) 339, 458
BstKTI GATC 2 cut(s) 354, 473
BstMBI GATC 2 cut(s) 351, 470
BstMWI GCNNNNNNNGC 3 cut(s) 69, 206, 318
BstNI CCWGG 1 cut(s) 238
BstSCI CCNGG 1 cut(s) 236
BstSLI GKGCMC 2 cut(s) 334, 453
BstUI CGCG 1 cut(s) 444
BstX2I RGATCY 1 cut(s) 470
BstYI RGATCY 1 cut(s) 470
BtuMI TCGCGA 1 cut(s) 444
Cac8I GCNNGC 2 cut(s) 74, 207
CfoI GCGC 2 cut(s) 339, 458
CseI GACGC 1 cut(s) 126
Csp6I GTAC 1 cut(s) 251
CviAII CATG 3 cut(s) 6, 426, 490
CviJI RGCY 5 cut(s) 88, 200, 205, 242, 292
CviKI_1 RGCY 5 cut(s) 88, 200, 205, 242, 292
CviQI GTAC 1 cut(s) 251
DdeI CTNAG 3 cut(s) 174, 201, 246
DpnI GATC 2 cut(s) 353, 472
DpnII GATC 2 cut(s) 351, 470
Eam1104I CTCTTC 1 cut(s) 96
EarI CTCTTC 1 cut(s) 96
Eco47III AGCGCT 2 cut(s) 338, 457
EcoRI GAATTC 2 cut(s) 344, 463
EcoRII CCWGG 1 cut(s) 236
FaeI CATG 3 cut(s) 9, 429, 493
FaiI YATR 5 cut(s) 7, 219, 427, 461, 491
FatI CATG 3 cut(s) 5, 425, 489
GlaI GCGC 2 cut(s) 338, 457
GsaI CCCAGC 3 cut(s) 59, 337, 456
HaeII RGCGCY 2 cut(s) 340, 459
HapII CCGG 2 cut(s) 349, 468
HgaI GACGC 1 cut(s) 126
HhaI GCGC 2 cut(s) 339, 458
Hin1I GRCGYC 2 cut(s) 396, 515
Hin1II CATG 3 cut(s) 9, 429, 493
Hin6I GCGC 2 cut(s) 337, 456
HinP1I GCGC 2 cut(s) 337, 456
HindIII AAGCTT 1 cut(s) 203
HinfI GANTC 2 cut(s) 305, 357
HpaII CCGG 2 cut(s) 349, 468
Hpy188I TCNGA 7 cut(s) 142, 247, 326, 356, 391, 475, 510
Hpy188III TCNNGA 4 cut(s) 297, 349, 443, 468
Hpy99I CGWCG 7 cut(s) 377, 380, 395, 398, 401, 499, 520
HpyAV CCTTC 1 cut(s) 264
HpyCH4IV ACGT 3 cut(s) 372, 396, 515
HpyCH4V TGCA 3 cut(s) 9, 209, 429
HpyF10VI GCNNNNNNNGC 3 cut(s) 69, 206, 318
HpyF3I CTNAG 3 cut(s) 174, 201, 246
HpySE526I ACGT 3 cut(s) 372, 396, 515
Hsp92I GRCGYC 2 cut(s) 396, 515
Hsp92II CATG 3 cut(s) 9, 429, 493
HspAI GCGC 2 cut(s) 337, 456
Kpn2I TCCGGA 2 cut(s) 348, 467
KpnI GGTACC 1 cut(s) 254
Kzo9I GATC 2 cut(s) 351, 470
LmnI GCTCC 1 cut(s) 85
MaeII ACGT 3 cut(s) 372, 396, 515
MalI GATC 2 cut(s) 353, 472
MboI GATC 2 cut(s) 351, 470
MboII GAAGA 1 cut(s) 113
MflI RGATCY 1 cut(s) 470
MhlI GDGCHC 2 cut(s) 334, 453
MluCI AATT 2 cut(s) 344, 463
MmeI TCCRAC 1 cut(s) 414
MnlI CCTC 7 cut(s) 21, 76, 138, 190, 241, 261, 428
MroI TCCGGA 2 cut(s) 348, 467
MseI TTAA 1 cut(s) 222
MspI CCGG 2 cut(s) 349, 468
MspR9I CCNGG 1 cut(s) 238
Mva1269I GAATGC 1 cut(s) 160
MvaI CCWGG 1 cut(s) 238
MvnI CGCG 1 cut(s) 444
MwoI GCNNNNNNNGC 3 cut(s) 69, 206, 318
NdeII GATC 2 cut(s) 351, 470
NlaIII CATG 3 cut(s) 9, 429, 493
NlaIV GGNNCC 2 cut(s) 38, 252
NruI TCGCGA 1 cut(s) 444
PctI GAATGC 1 cut(s) 160
PfeI GAWTC 2 cut(s) 305, 357
PflFI GACNNNGTC 1 cut(s) 395
Psp6I CCWGG 1 cut(s) 236
PspFI CCCAGC 3 cut(s) 55, 333, 452
PspGI CCWGG 1 cut(s) 236
PspN4I GGNNCC 2 cut(s) 38, 252
PsuI RGATCY 1 cut(s) 470
PsyI GACNNNGTC 1 cut(s) 395
RruI TCGCGA 1 cut(s) 444
RsaI GTAC 1 cut(s) 252
RsaNI GTAC 1 cut(s) 251
SaqAI TTAA 1 cut(s) 222
Sau3AI GATC 2 cut(s) 351, 470
ScrFI CCNGG 1 cut(s) 238
SduI GDGCHC 2 cut(s) 334, 453
SetI ASST 8 cut(s) 90, 207, 252, 256, 272, 375, 399, 518
SmlI CTYRAG 1 cut(s) 194
SmoI CTYRAG 1 cut(s) 194
Sse9I AATT 2 cut(s) 344, 463
StyD4I CCNGG 1 cut(s) 236
TaiI ACGT 3 cut(s) 375, 399, 518
TasI AATT 2 cut(s) 344, 463
TfiI GAWTC 2 cut(s) 305, 357
Tru1I TTAA 1 cut(s) 222
Tru9I TTAA 1 cut(s) 222
TspDTI ATGAA 1 cut(s) 476
Tth111I GACNNNGTC 1 cut(s) 395
XapI RAATTY 2 cut(s) 344, 463
ZraI GACGTC 2 cut(s) 397, 516
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.